| iron sulfur cluster assembly | GO:0016226 | 3 | 0.750 | |
| mitochondrion organization | GO:0007005 | 134 | 0.077 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.070 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.042 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.033 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.031 | |
| metallo sulfur cluster assembly | GO:0031163 | 3 | 0.031 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.030 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.029 | |
| protein processing | GO:0016485 | 163 | 0.029 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.028 | |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.028 | |
| intracellular protein transport | GO:0006886 | 204 | 0.028 | |
| protein maturation | GO:0051604 | 176 | 0.027 | |
| protein catabolic process | GO:0030163 | 221 | 0.027 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.026 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.026 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.025 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.025 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.024 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.024 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.023 | |
| microtubule based process | GO:0007017 | 236 | 0.022 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.022 | |
| spermatogenesis | GO:0007283 | 284 | 0.022 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.021 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.021 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.021 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.021 | |
| negative regulation of phosphorylation | GO:0042326 | 166 | 0.021 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.021 | |
| chiasma assembly | GO:0051026 | 6 | 0.020 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.020 | |
| regulation of peptide transport | GO:0090087 | 91 | 0.020 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.020 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.019 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.019 | |
| regulation of protein localization | GO:0032880 | 231 | 0.019 | |
| protein localization to organelle | GO:0033365 | 185 | 0.019 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.019 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.018 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.018 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.018 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.018 | |
| endomembrane system organization | GO:0010256 | 147 | 0.018 | |
| regulation of protein transport | GO:0051223 | 163 | 0.017 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.017 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.017 | |
| transmembrane transport | GO:0055085 | 412 | 0.017 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.017 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.016 | |
| regulation of peptidase activity | GO:0052547 | 96 | 0.016 | |
| sulfur compound biosynthetic process | GO:0044272 | 37 | 0.016 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.016 | |
| positive regulation of transferase activity | GO:0051347 | 167 | 0.016 | |
| muscle tissue development | GO:0060537 | 308 | 0.016 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.015 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.015 | |
| peptide transport | GO:0015833 | 133 | 0.015 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 49 | 0.015 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.015 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.015 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.015 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.015 | |
| nuclear transport | GO:0051169 | 139 | 0.015 | |
| cardiac muscle tissue development | GO:0048738 | 130 | 0.014 | |
| regulation of endopeptidase activity | GO:0052548 | 89 | 0.014 | |
| protein targeting | GO:0006605 | 143 | 0.014 | |
| negative regulation of chromosome organization | GO:2001251 | 30 | 0.014 | |
| amine metabolic process | GO:0009308 | 45 | 0.014 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.014 | |
| trna wobble uridine modification | GO:0002098 | 2 | 0.014 | |
| gene silencing | GO:0016458 | 38 | 0.014 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.014 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.014 | |
| water soluble vitamin biosynthetic process | GO:0042364 | 3 | 0.014 | |
| mapk cascade | GO:0000165 | 281 | 0.013 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.013 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.013 | |
| canonical wnt signaling pathway | GO:0060070 | 130 | 0.013 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.013 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.013 | |
| chromatin organization | GO:0006325 | 206 | 0.013 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.013 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.012 | |
| trna wobble base modification | GO:0002097 | 2 | 0.012 | |
| protein secretion | GO:0009306 | 111 | 0.012 | |
| amide transport | GO:0042886 | 138 | 0.012 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.012 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.012 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.012 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.012 | |
| regulation of secretion | GO:0051046 | 274 | 0.012 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.012 | |
| apoptotic mitochondrial changes | GO:0008637 | 48 | 0.012 | |
| regulation of transcription from rna polymerase ii promoter involved in determination of left right symmetry | GO:1900094 | 2 | 0.012 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 31 | 0.012 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.012 | |
| positive regulation of meiotic cell cycle | GO:0051446 | 15 | 0.012 | |
| positive regulation of meiosis i | GO:0060903 | 5 | 0.011 | |
| male gamete generation | GO:0048232 | 285 | 0.011 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.011 | |
| synaptic transmission | GO:0007268 | 329 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.011 | |
| protein import | GO:0017038 | 101 | 0.011 | |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.011 | |
| protein ubiquitination | GO:0016567 | 171 | 0.011 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.011 | |
| maternal process involved in female pregnancy | GO:0060135 | 32 | 0.011 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 65 | 0.011 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.011 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.011 | |
| chromatin modification | GO:0016568 | 187 | 0.010 | |
| protein targeting to mitochondrion | GO:0006626 | 6 | 0.010 | |
| regulation of protein targeting | GO:1903533 | 61 | 0.010 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.010 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.010 | |
| spermatid development | GO:0007286 | 108 | 0.010 | |
| regulation of histone modification | GO:0031056 | 56 | 0.010 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.010 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.010 | |
