| dna metabolic process | GO:0006259 | 303 | 0.625 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.488 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.109 | |
| protein acylation | GO:0043543 | 64 | 0.108 | |
| dna repair | GO:0006281 | 107 | 0.104 | |
| protein ubiquitination | GO:0016567 | 171 | 0.098 | |
| histone modification | GO:0016570 | 159 | 0.084 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.076 | |
| organelle fission | GO:0048285 | 170 | 0.074 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.073 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.067 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.066 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.065 | |
| chromatin organization | GO:0006325 | 206 | 0.063 | |
| rna interference | GO:0016246 | 2 | 0.058 | |
| regulation of histone modification | GO:0031056 | 56 | 0.056 | |
| rna processing | GO:0006396 | 105 | 0.054 | |
| meiotic cell cycle process | GO:1903046 | 77 | 0.054 | |
| response to growth factor | GO:0070848 | 198 | 0.053 | |
| stem cell differentiation | GO:0048863 | 268 | 0.051 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.049 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.048 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.046 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.044 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.044 | |
| histone acetylation | GO:0016573 | 41 | 0.042 | |
| amine metabolic process | GO:0009308 | 45 | 0.041 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.041 | |
| mrna processing | GO:0006397 | 63 | 0.040 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.039 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.039 | |
| mrna metabolic process | GO:0016071 | 84 | 0.038 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.037 | |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.037 | |
| chromatin modification | GO:0016568 | 187 | 0.036 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.034 | |
| microtubule based process | GO:0007017 | 236 | 0.034 | |
| stem cell development | GO:0048864 | 219 | 0.034 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.034 | |
| nuclear division | GO:0000280 | 158 | 0.033 | |
| regulation of chromatin modification | GO:1903308 | 57 | 0.032 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.030 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 49 | 0.029 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.029 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.029 | |
| response to radiation | GO:0009314 | 165 | 0.028 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.028 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.028 | |
| stem cell maintenance | GO:0019827 | 130 | 0.027 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.026 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.026 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.025 | |
| methylation | GO:0032259 | 134 | 0.025 | |
| response to oxidative stress | GO:0006979 | 123 | 0.024 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.024 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.024 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.023 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.023 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 2 | 0.023 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.023 | |
| rna 3 end processing | GO:0031123 | 20 | 0.022 | |
| organelle localization | GO:0051640 | 179 | 0.022 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.022 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.022 | |
| mitotic sister chromatid cohesion | GO:0007064 | 1 | 0.021 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.021 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.020 | |
| protein methylation | GO:0006479 | 81 | 0.020 | |
| protein alkylation | GO:0008213 | 81 | 0.019 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.019 | |
| cell division | GO:0051301 | 120 | 0.019 | |
| gene silencing | GO:0016458 | 38 | 0.019 | |
| spermatid differentiation | GO:0048515 | 115 | 0.019 | |
| histone mrna metabolic process | GO:0008334 | 3 | 0.018 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.018 | |
| respiratory system development | GO:0060541 | 190 | 0.018 | |
| macromolecule methylation | GO:0043414 | 120 | 0.018 | |
| mapk cascade | GO:0000165 | 281 | 0.018 | Fly |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.018 | |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.017 | |
| protein catabolic process | GO:0030163 | 221 | 0.017 | |
| response to peptide | GO:1901652 | 136 | 0.017 | |
| response to light stimulus | GO:0009416 | 135 | 0.016 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.016 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 4 | 0.016 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.016 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.016 | |
| maintenance of protein location in nucleus | GO:0051457 | 2 | 0.016 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 139 | 0.015 | |
| myeloid cell differentiation | GO:0030099 | 233 | 0.015 | |
| nucleus organization | GO:0006997 | 45 | 0.015 | |
| double strand break repair | GO:0006302 | 48 | 0.015 | |
| regulation of chromatin organization | GO:1902275 | 57 | 0.015 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.015 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.014 | |
| b cell activation | GO:0042113 | 161 | 0.014 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.014 | |
| respiratory tube development | GO:0030323 | 167 | 0.014 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.014 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.014 | |
| peptidyl lysine acetylation | GO:0018394 | 45 | 0.014 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.014 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.014 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.014 | |
| oocyte axis specification | GO:0007309 | 2 | 0.014 | |
| spermatid development | GO:0007286 | 108 | 0.014 | |
| dna dependent dna replication | GO:0006261 | 24 | 0.014 | |
| posttranscriptional gene silencing | GO:0016441 | 10 | 0.013 | |
| regulation of peptidyl lysine acetylation | GO:2000756 | 22 | 0.013 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.012 | |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.012 | Fly |
| asymmetric stem cell division | GO:0098722 | 3 | 0.012 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.012 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.012 | Fly |
| termination of rna polymerase ii transcription | GO:0006369 | 1 | 0.012 | |
| regulation of response to dna damage stimulus | GO:2001020 | 34 | 0.012 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.012 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.012 | |
| cell maturation | GO:0048469 | 127 | 0.012 | |
| internal peptidyl lysine acetylation | GO:0018393 | 42 | 0.012 | |
| mesenchymal cell differentiation | GO:0048762 | 107 | 0.012 | |
| maintenance of location | GO:0051235 | 89 | 0.012 | |
| regulation of circadian rhythm | GO:0042752 | 58 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.011 | |
| chromosome segregation | GO:0007059 | 48 | 0.011 | |
| palate development | GO:0060021 | 76 | 0.011 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.011 | |
| dephosphorylation | GO:0016311 | 129 | 0.011 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.011 | |
| myeloid cell homeostasis | GO:0002262 | 114 | 0.011 | |
| erbb signaling pathway | GO:0038127 | 32 | 0.011 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.011 | |
| internal protein amino acid acetylation | GO:0006475 | 42 | 0.011 | |
| protein lipidation | GO:0006497 | 28 | 0.011 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.011 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 2 | 0.010 | |
| regulation of histone acetylation | GO:0035065 | 19 | 0.010 | |
| male gamete generation | GO:0048232 | 285 | 0.010 | |
| positive regulation of protein complex assembly | GO:0031334 | 45 | 0.010 | |