| covalent chromatin modification | GO:0016569 | 163 | 0.153 | |
| macromolecule methylation | GO:0043414 | 120 | 0.106 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.090 | |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.080 | Fly |
| oocyte axis specification | GO:0007309 | 2 | 0.078 | |
| pole plasm assembly | GO:0007315 | 2 | 0.077 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.072 | |
| regulation of histone h3 k4 methylation | GO:0051569 | 12 | 0.072 | |
| histone lysine methylation | GO:0034968 | 50 | 0.070 | |
| chromatin modification | GO:0016568 | 187 | 0.068 | |
| histone methylation | GO:0016571 | 71 | 0.063 | |
| protein targeting | GO:0006605 | 143 | 0.062 | |
| histone modification | GO:0016570 | 159 | 0.056 | |
| protein acylation | GO:0043543 | 64 | 0.053 | |
| protein localization to organelle | GO:0033365 | 185 | 0.047 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.046 | |
| oocyte construction | GO:0007308 | 2 | 0.043 | |
| protein dealkylation | GO:0008214 | 13 | 0.042 | |
| chromatin organization | GO:0006325 | 206 | 0.040 | |
| nuclear transport | GO:0051169 | 139 | 0.040 | |
| intracellular protein transport | GO:0006886 | 204 | 0.037 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.036 | |
| regulation of binding | GO:0051098 | 111 | 0.035 | |
| protein methylation | GO:0006479 | 81 | 0.035 | |
| blastocyst development | GO:0001824 | 80 | 0.034 | |
| organelle fission | GO:0048285 | 170 | 0.033 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.033 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.033 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.033 | |
| germ cell development | GO:0007281 | 185 | 0.031 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.031 | |
| histone lysine demethylation | GO:0070076 | 13 | 0.030 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.030 | |
| translation | GO:0006412 | 93 | 0.029 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.029 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.029 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.028 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.028 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.028 | |
| nuclear import | GO:0051170 | 95 | 0.028 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.028 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.028 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.027 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.027 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.026 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.026 | |
| regulation of chromatin modification | GO:1903308 | 57 | 0.026 | |
| actin cytoskeleton organization | GO:0030036 | 220 | 0.026 | |
| methylation | GO:0032259 | 134 | 0.026 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.025 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.025 | |
| protein import into nucleus | GO:0006606 | 95 | 0.025 | |
| nuclear division | GO:0000280 | 158 | 0.025 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.025 | |
| stem cell proliferation | GO:0072089 | 117 | 0.025 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.024 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.023 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.023 | |
| stem cell fate specification | GO:0048866 | 3 | 0.023 | |
| peptidyl lysine acetylation | GO:0018394 | 45 | 0.023 | |
| lateral inhibition | GO:0046331 | 1 | 0.023 | |
| skeletal system development | GO:0001501 | 356 | 0.023 | |
| protein catabolic process | GO:0030163 | 221 | 0.023 | |
| regulation of transcription during meiosis | GO:0051037 | 1 | 0.022 | |
| dephosphorylation | GO:0016311 | 129 | 0.022 | |
| oogenesis | GO:0048477 | 56 | 0.022 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.022 | |
| histone acetylation | GO:0016573 | 41 | 0.022 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.021 | |
| regulation of protein localization | GO:0032880 | 231 | 0.021 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.021 | |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 3 | 0.021 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.021 | |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.021 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.021 | |
| histone h3 k4 methylation | GO:0051568 | 23 | 0.021 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.020 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.020 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.020 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.020 | |
| protein alkylation | GO:0008213 | 81 | 0.020 | |
| internal protein amino acid acetylation | GO:0006475 | 42 | 0.020 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.020 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.020 | |
| protein demethylation | GO:0006482 | 13 | 0.019 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.019 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.019 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.019 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.019 | |
| single organism nuclear import | GO:1902593 | 95 | 0.019 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.018 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.018 | |
| internal peptidyl lysine acetylation | GO:0018393 | 42 | 0.018 | |
| rhythmic process | GO:0048511 | 174 | 0.017 | |
| gene silencing by mirna | GO:0035195 | 10 | 0.017 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.017 | |
| spermatogenesis | GO:0007283 | 284 | 0.017 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.017 | |
| response to growth factor | GO:0070848 | 198 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.017 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.017 | |
| zygotic determination of anterior posterior axis embryo | GO:0007354 | 3 | 0.016 | |
| mrna metabolic process | GO:0016071 | 84 | 0.016 | Rat Fly |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.016 | |
| circadian regulation of gene expression | GO:0032922 | 48 | 0.016 | |
| protein import | GO:0017038 | 101 | 0.016 | |
| male gamete generation | GO:0048232 | 285 | 0.016 | |
| neural precursor cell proliferation | GO:0061351 | 121 | 0.016 | |
| regulation of sequence specific dna binding transcription factor activity | GO:0051090 | 106 | 0.016 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.015 | |
| histone h3 acetylation | GO:0043966 | 14 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 205 | 0.015 | |
| regulation of histone h3 k9 methylation | GO:0051570 | 8 | 0.015 | |
| rna splicing | GO:0008380 | 54 | 0.015 | Fly |
| microtubule based process | GO:0007017 | 236 | 0.015 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.015 | |
| maintenance of location | GO:0051235 | 89 | 0.015 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.014 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 91 | 0.014 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.014 | |
| rna localization | GO:0006403 | 23 | 0.014 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.014 | |
| female gamete generation | GO:0007292 | 74 | 0.014 | |
| regulation of cell activation | GO:0050865 | 289 | 0.014 | |
| cell adhesion | GO:0007155 | 329 | 0.014 | |
| respiratory tube development | GO:0030323 | 167 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.014 | |
| b cell activation | GO:0042113 | 161 | 0.013 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.013 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 10 | 0.013 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.013 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.013 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.013 | |
| mitotic cytokinesis | GO:0000281 | 4 | 0.013 | |
| digestive system development | GO:0055123 | 200 | 0.013 | |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.013 | Fly |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.013 | |
| positive regulation of map kinase activity | GO:0043406 | 84 | 0.013 | |
| gonad development | GO:0008406 | 141 | 0.013 | |
| glycerolipid metabolic process | GO:0046486 | 122 | 0.013 | |
| negative regulation of sequence specific dna binding transcription factor activity | GO:0043433 | 40 | 0.013 | |
| endocytosis | GO:0006897 | 168 | 0.013 | |
| regulation of cell cell adhesion mediated by cadherin | GO:2000047 | 2 | 0.013 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.013 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.013 | |
| embryonic epithelial tube formation | GO:0001838 | 130 | 0.013 | |
| regulation of histone methylation | GO:0031060 | 30 | 0.013 | |
| connective tissue development | GO:0061448 | 179 | 0.013 | |
| positive regulation of gtp catabolic process | GO:0033126 | 85 | 0.012 | |
| digestive tract development | GO:0048565 | 190 | 0.012 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.012 | |
| regulation of intrinsic apoptotic signaling pathway | GO:2001242 | 61 | 0.012 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.012 | |
| histone demethylation | GO:0016577 | 13 | 0.012 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.012 | |
| muscle tissue development | GO:0060537 | 308 | 0.012 | |
| epithelial cell development | GO:0002064 | 159 | 0.012 | |
| camera type eye development | GO:0043010 | 266 | 0.012 | |
| epithelial tube formation | GO:0072175 | 130 | 0.012 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.012 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.012 | |
| rna processing | GO:0006396 | 105 | 0.012 | Rat Fly |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.012 | |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.012 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.011 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.011 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.011 | |
| tube closure | GO:0060606 | 91 | 0.011 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.011 | |
| positive regulation of mapk cascade | GO:0043410 | 170 | 0.011 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.011 | |
| rna interference | GO:0016246 | 2 | 0.011 | |
| circadian rhythm | GO:0007623 | 114 | 0.011 | |
| neuron death | GO:0070997 | 154 | 0.011 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.011 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.011 | |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.011 | Fly |
| positive regulation of nucleotide catabolic process | GO:0030813 | 88 | 0.011 | |
| cellularization | GO:0007349 | 1 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.011 | |
| positive regulation of hormone metabolic process | GO:0032352 | 3 | 0.011 | |
| cellular response to lipid | GO:0071396 | 145 | 0.011 | |
| myeloid leukocyte differentiation | GO:0002573 | 119 | 0.011 | |
| inner cell mass cell proliferation | GO:0001833 | 15 | 0.011 | |
| regulation of multi organism process | GO:0043900 | 111 | 0.011 | |
| response to lipopolysaccharide | GO:0032496 | 128 | 0.011 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.011 | |
| regulation of protein processing | GO:0070613 | 96 | 0.011 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.011 | |
| snrna metabolic process | GO:0016073 | 1 | 0.011 | |
| guanosine containing compound metabolic process | GO:1901068 | 144 | 0.011 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.011 | |
| protein ubiquitination | GO:0016567 | 171 | 0.010 | |
| positive regulation of mitotic metaphase anaphase transition | GO:0045842 | 2 | 0.010 | |
| transmembrane transport | GO:0055085 | 412 | 0.010 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.010 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.010 | |