| intra golgi vesicle mediated transport | GO:0006891 | 1 | 0.949 | |
| golgi vesicle transport | GO:0048193 | 30 | 0.532 | Yeast |
| retrograde vesicle mediated transport golgi to er | GO:0006890 | 1 | 0.516 | Yeast |
| cytoplasmic transport | GO:0016482 | 234 | 0.463 | Yeast |
| er to golgi vesicle mediated transport | GO:0006888 | 11 | 0.255 | Yeast |
| localization within membrane | GO:0051668 | 4 | 0.166 | |
| endomembrane system organization | GO:0010256 | 147 | 0.160 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.154 | |
| vesicle organization | GO:0016050 | 60 | 0.141 | Yeast |
| copii coated vesicle budding | GO:0090114 | 2 | 0.124 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.124 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.124 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.120 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.118 | |
| intracellular protein transport | GO:0006886 | 204 | 0.112 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.109 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.109 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.105 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.103 | |
| regulation of secretion | GO:0051046 | 274 | 0.102 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.099 | |
| retrograde transport endosome to golgi | GO:0042147 | 2 | 0.094 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.093 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.091 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.085 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.085 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 205 | 0.081 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.080 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.080 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.076 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.076 | |
| membrane organization | GO:0061024 | 245 | 0.074 | Yeast |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.073 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.072 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.069 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.069 | |
| regulation of er to golgi vesicle mediated transport | GO:0060628 | 4 | 0.067 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.067 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.067 | |
| guanosine containing compound metabolic process | GO:1901068 | 144 | 0.066 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.064 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.063 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.063 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.062 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.060 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.060 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.060 | |
| vacuole organization | GO:0007033 | 38 | 0.060 | |
| golgi to endosome transport | GO:0006895 | 3 | 0.055 | |
| male gamete generation | GO:0048232 | 285 | 0.054 | |
| positive regulation of secretion by cell | GO:1903532 | 114 | 0.054 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.053 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.053 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.052 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.052 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.051 | |
| regulation of protein localization | GO:0032880 | 231 | 0.051 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.050 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.048 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.047 | |
| glycoprotein metabolic process | GO:0009100 | 116 | 0.045 | |
| protein targeting | GO:0006605 | 143 | 0.045 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.045 | |
| exocytosis | GO:0006887 | 121 | 0.044 | |
| guanosine containing compound catabolic process | GO:1901069 | 144 | 0.043 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.041 | |
| cargo loading into vesicle | GO:0035459 | 3 | 0.041 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.039 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.038 | |
| organelle localization | GO:0051640 | 179 | 0.037 | |
| protein localization to organelle | GO:0033365 | 185 | 0.037 | |
| regulation of cell migration | GO:0030334 | 219 | 0.037 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.037 | |
| spermatid differentiation | GO:0048515 | 115 | 0.036 | |
| maintenance of location | GO:0051235 | 89 | 0.034 | |
| asymmetric stem cell division | GO:0098722 | 3 | 0.033 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.033 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.033 | |
| regulation of exocytosis | GO:0017157 | 61 | 0.033 | |
| cellular response to nutrient levels | GO:0031669 | 64 | 0.032 | |
| regulation of vacuole organization | GO:0044088 | 4 | 0.031 | |
| melanosome transport | GO:0032402 | 11 | 0.031 | |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.030 | |
| gtp metabolic process | GO:0046039 | 144 | 0.030 | |
| regulation of cell motility | GO:2000145 | 236 | 0.029 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.029 | |
| amine metabolic process | GO:0009308 | 45 | 0.029 | |
| endocytosis | GO:0006897 | 168 | 0.029 | |
| spermatogenesis | GO:0007283 | 284 | 0.028 | |
| vesicle localization | GO:0051648 | 86 | 0.028 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.028 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.028 | |
| gtp catabolic process | GO:0006184 | 143 | 0.028 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.027 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.027 | |
| germ cell development | GO:0007281 | 185 | 0.027 | |
| spermatid development | GO:0007286 | 108 | 0.026 | |
| vacuolar transport | GO:0007034 | 11 | 0.026 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.026 | |
| compound eye development | GO:0048749 | 1 | 0.025 | |
| synaptic transmission | GO:0007268 | 329 | 0.025 | |
| positive regulation of secretion | GO:0051047 | 130 | 0.025 | |
| cation homeostasis | GO:0055080 | 212 | 0.025 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.024 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.024 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.024 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.024 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.024 | |
| membrane fusion | GO:0061025 | 38 | 0.024 | Yeast |
| wnt signaling pathway | GO:0016055 | 188 | 0.023 | |
| post golgi vesicle mediated transport | GO:0006892 | 13 | 0.022 | |
| transmembrane transport | GO:0055085 | 412 | 0.022 | |
| cation transport | GO:0006812 | 399 | 0.022 | |
| positive regulation of phospholipase activity | GO:0010518 | 3 | 0.022 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.022 | |
| establishment of protein localization to membrane | GO:0090150 | 54 | 0.020 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.020 | |
| toxin transport | GO:1901998 | 38 | 0.020 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.020 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.019 | |
| metal ion homeostasis | GO:0055065 | 189 | 0.019 | |
| protein targeting to vacuole | GO:0006623 | 3 | 0.019 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.019 | |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.019 | |
| positive regulation of cell activation | GO:0050867 | 158 | 0.018 | |
| regulation of cell projection organization | GO:0031344 | 206 | 0.018 | |
| peptide hormone secretion | GO:0030072 | 109 | 0.018 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.018 | |
| response to unfolded protein | GO:0006986 | 21 | 0.018 | |
| protein import | GO:0017038 | 101 | 0.017 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.017 | |
| establishment of vesicle localization | GO:0051650 | 81 | 0.017 | |
| adult behavior | GO:0030534 | 135 | 0.017 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.017 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.017 | |
| regulation of protein transport | GO:0051223 | 163 | 0.017 | |
| cytokine production | GO:0001816 | 319 | 0.016 | |
| protein secretion | GO:0009306 | 111 | 0.016 | |
| regulation of autophagic vacuole assembly | GO:2000785 | 4 | 0.016 | |
| amide transport | GO:0042886 | 138 | 0.016 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.016 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.016 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.016 | |
| endoplasmic reticulum unfolded protein response | GO:0030968 | 19 | 0.016 | |
| sequestering of metal ion | GO:0051238 | 19 | 0.016 | |
| neurotransmitter transport | GO:0006836 | 76 | 0.015 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.015 | |
| pole plasm assembly | GO:0007315 | 2 | 0.015 | |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.015 | |
| cell division | GO:0051301 | 120 | 0.015 | |
| developmental maturation | GO:0021700 | 193 | 0.015 | |
| regulation of homeostatic process | GO:0032844 | 182 | 0.015 | |
| skeletal system development | GO:0001501 | 356 | 0.015 | |
| cellular chemical homeostasis | GO:0055082 | 215 | 0.015 | |
| insulin secretion | GO:0030073 | 89 | 0.015 | |
| response to topologically incorrect protein | GO:0035966 | 25 | 0.014 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.014 | |
| synapse organization | GO:0050808 | 125 | 0.014 | |
| inorganic cation transmembrane transport | GO:0098662 | 207 | 0.014 | |
| divalent inorganic cation homeostasis | GO:0072507 | 138 | 0.014 | |
| hormone secretion | GO:0046879 | 128 | 0.014 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.014 | |
| macroautophagy | GO:0016236 | 21 | 0.014 | |
| positive regulation of cell motility | GO:2000147 | 116 | 0.014 | |
| peptide transport | GO:0015833 | 133 | 0.014 | |
| golgi organization | GO:0007030 | 9 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.014 | |
| establishment or maintenance of cytoskeleton polarity | GO:0030952 | 2 | 0.013 | |
| response to radiation | GO:0009314 | 165 | 0.013 | |
| synaptic vesicle localization | GO:0097479 | 59 | 0.013 | |
| cellular ion homeostasis | GO:0006873 | 165 | 0.013 | |
| cellular response to topologically incorrect protein | GO:0035967 | 25 | 0.013 | |
| nuclear transport | GO:0051169 | 139 | 0.013 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.013 | |
| canonical wnt signaling pathway | GO:0060070 | 130 | 0.013 | |
| regulation of cytokine production | GO:0001817 | 266 | 0.013 | |
| establishment of protein localization to vacuole | GO:0072666 | 4 | 0.013 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.013 | |
| regulation of hormone secretion | GO:0046883 | 88 | 0.013 | |
| establishment of synaptic vesicle localization | GO:0097480 | 57 | 0.013 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 59 | 0.013 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.013 | |
| response to organic cyclic compound | GO:0014070 | 198 | 0.013 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.012 | |
| immune effector process | GO:0002252 | 321 | 0.012 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.012 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.012 | |
| inter male aggressive behavior | GO:0002121 | 3 | 0.012 | |
| cellular response to external stimulus | GO:0071496 | 88 | 0.012 | |
| activation of adenylate cyclase activity | GO:0007190 | 4 | 0.012 | |
| sequestering of calcium ion | GO:0051208 | 18 | 0.012 | |
| positive regulation of protein transport | GO:0051222 | 93 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.012 | |
| protein localization to membrane | GO:0072657 | 108 | 0.012 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 114 | 0.012 | |
| protein localization to vacuole | GO:0072665 | 4 | 0.012 | |
| regulation of protein exit from endoplasmic reticulum | GO:0070861 | 1 | 0.012 | |
| regionalization | GO:0003002 | 337 | 0.012 | |
| cell adhesion | GO:0007155 | 329 | 0.012 | |
| organophosphate biosynthetic process | GO:0090407 | 122 | 0.012 | |
| locomotory behavior | GO:0007626 | 195 | 0.012 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.012 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.012 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.011 | |
| carbohydrate homeostasis | GO:0033500 | 128 | 0.011 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 127 | 0.011 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.011 | |
| leukocyte migration | GO:0050900 | 124 | 0.011 | |
| vesicle fusion | GO:0006906 | 16 | 0.011 | Yeast |
| regulation of ion transport | GO:0043269 | 215 | 0.011 | |
| protein localization to plasma membrane | GO:0072659 | 57 | 0.011 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.011 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 79 | 0.011 | |
| methylation | GO:0032259 | 134 | 0.011 | |
| regulation of peptide transport | GO:0090087 | 91 | 0.011 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.011 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 85 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.011 | |
| asymmetric neuroblast division | GO:0055059 | 1 | 0.011 | |
| interleukin 8 production | GO:0032637 | 4 | 0.011 | |
| camera type eye development | GO:0043010 | 266 | 0.011 | |
| cellular response to starvation | GO:0009267 | 57 | 0.011 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 57 | 0.011 | |
| adult locomotory behavior | GO:0008344 | 91 | 0.011 | |
| plasma membrane organization | GO:0007009 | 90 | 0.011 | |
| positive regulation of cell development | GO:0010720 | 237 | 0.011 | |
| molting cycle | GO:0042303 | 90 | 0.011 | |
| renal system development | GO:0072001 | 225 | 0.011 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.011 | |
| synaptic vesicle transport | GO:0048489 | 57 | 0.010 | |
| regulation of peptide secretion | GO:0002791 | 77 | 0.010 | |
| organelle fusion | GO:0048284 | 28 | 0.010 | Yeast |
| regulation of multi organism process | GO:0043900 | 111 | 0.010 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.010 | |
| chromatin organization | GO:0006325 | 206 | 0.010 | |
| regulation of defense response | GO:0031347 | 233 | 0.010 | |
| nucleotide biosynthetic process | GO:0009165 | 78 | 0.010 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.010 | |
| virion assembly | GO:0019068 | 1 | 0.010 | |
| establishment of protein localization to plasma membrane | GO:0090002 | 34 | 0.010 | |
| regulation of tumor necrosis factor superfamily cytokine production | GO:1903555 | 50 | 0.010 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 88 | 0.010 | |
