| carboxylic acid catabolic process | GO:0046395 | 51 | 0.984 | Rat |
| lipid oxidation | GO:0034440 | 29 | 0.936 | Rat |
| organic acid catabolic process | GO:0016054 | 51 | 0.933 | Rat |
| fatty acid oxidation | GO:0019395 | 28 | 0.924 | Rat |
| acyl coa metabolic process | GO:0006637 | 19 | 0.891 | |
| small molecule catabolic process | GO:0044282 | 71 | 0.863 | Rat |
| sulfur compound metabolic process | GO:0006790 | 100 | 0.812 | |
| oxidation reduction process | GO:0055114 | 342 | 0.747 | Rat |
| thioester metabolic process | GO:0035383 | 19 | 0.713 | |
| cellular lipid catabolic process | GO:0044242 | 52 | 0.710 | Rat |
| fatty acid beta oxidation | GO:0006635 | 16 | 0.672 | Rat |
| coenzyme metabolic process | GO:0006732 | 52 | 0.671 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.669 | |
| monocarboxylic acid catabolic process | GO:0072329 | 27 | 0.481 | Rat |
| monocarboxylic acid metabolic process | GO:0032787 | 191 | 0.349 | Rat |
| mitochondrial transport | GO:0006839 | 36 | 0.339 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.196 | Rat |
| alpha amino acid metabolic process | GO:1901605 | 59 | 0.190 | |
| cofactor metabolic process | GO:0051186 | 80 | 0.188 | |
| lipid catabolic process | GO:0016042 | 69 | 0.171 | Rat |
| cellular amino acid catabolic process | GO:0009063 | 25 | 0.157 | |
| protein homooligomerization | GO:0051260 | 43 | 0.155 | |
| membrane organization | GO:0061024 | 245 | 0.154 | |
| mitochondrial membrane organization | GO:0007006 | 26 | 0.151 | |
| protein oligomerization | GO:0051259 | 67 | 0.138 | |
| glutamine family amino acid biosynthetic process | GO:0009084 | 2 | 0.129 | |
| lipid modification | GO:0030258 | 65 | 0.116 | Rat |
| fatty acid metabolic process | GO:0006631 | 121 | 0.113 | Rat |
| cellular modified amino acid metabolic process | GO:0006575 | 63 | 0.109 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.109 | |
| amp metabolic process | GO:0046033 | 4 | 0.099 | |
| deoxyribose phosphate metabolic process | GO:0019692 | 9 | 0.094 | |
| mitochondrion organization | GO:0007005 | 134 | 0.093 | |
| small molecule biosynthetic process | GO:0044283 | 132 | 0.092 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.083 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.076 | |
| glutamine family amino acid metabolic process | GO:0009064 | 15 | 0.074 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.070 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.068 | |
| succinyl coa metabolic process | GO:0006104 | 1 | 0.063 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.062 | |
| purine deoxyribonucleoside triphosphate metabolic process | GO:0009215 | 7 | 0.060 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.060 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.059 | |
| regulation of mitochondrion organization | GO:0010821 | 27 | 0.058 | |
| branched chain amino acid catabolic process | GO:0009083 | 2 | 0.053 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.052 | |
| glutamate biosynthetic process | GO:0006537 | 2 | 0.050 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.050 | |
| transmembrane transport | GO:0055085 | 412 | 0.048 | |
| ossification | GO:0001503 | 216 | 0.044 | |
| apoptotic mitochondrial changes | GO:0008637 | 48 | 0.042 | |
| protein processing | GO:0016485 | 163 | 0.041 | |
| intracellular protein transport | GO:0006886 | 204 | 0.040 | |
| hepaticobiliary system development | GO:0061008 | 67 | 0.039 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.039 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.038 | |
| endocytosis | GO:0006897 | 168 | 0.038 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.038 | |
| carboxylic acid biosynthetic process | GO:0046394 | 86 | 0.038 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.038 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.036 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.036 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.036 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.036 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.035 | |
| gland development | GO:0048732 | 330 | 0.035 | |
| protein tetramerization | GO:0051262 | 23 | 0.035 | |
| cation transport | GO:0006812 | 399 | 0.035 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.034 | |
| protein maturation | GO:0051604 | 176 | 0.033 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 79 | 0.033 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.033 | |
| deoxyribonucleoside triphosphate metabolic process | GO:0009200 | 9 | 0.033 | |
| alpha amino acid biosynthetic process | GO:1901607 | 15 | 0.033 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.033 | |
| lipid biosynthetic process | GO:0008610 | 179 | 0.033 | |
| peptide metabolic process | GO:0006518 | 46 | 0.032 | |
| cellular amide metabolic process | GO:0043603 | 58 | 0.032 | |
| ribose phosphate biosynthetic process | GO:0046390 | 59 | 0.032 | |
| alpha amino acid catabolic process | GO:1901606 | 18 | 0.032 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.032 | |
| negative regulation of organelle organization | GO:0010639 | 90 | 0.031 | |
| glutamate metabolic process | GO:0006536 | 9 | 0.031 | |
| response to organic cyclic compound | GO:0014070 | 198 | 0.030 | |
| glycerol ether metabolic process | GO:0006662 | 2 | 0.030 | |
| protein localization to organelle | GO:0033365 | 185 | 0.030 | |
| t cell activation | GO:0042110 | 289 | 0.029 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.029 | |
| quinone metabolic process | GO:1901661 | 7 | 0.029 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.027 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.027 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.027 | |
| response to oxygen levels | GO:0070482 | 62 | 0.027 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.026 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 127 | 0.026 | |
| blood vessel morphogenesis | GO:0048514 | 285 | 0.026 | |
| hormone metabolic process | GO:0042445 | 86 | 0.026 | |
| response to hypoxia | GO:0001666 | 58 | 0.026 | |
| negative regulation of protein processing | GO:0010955 | 79 | 0.026 | |
| organophosphate biosynthetic process | GO:0090407 | 122 | 0.026 | |
| glutathione metabolic process | GO:0006749 | 16 | 0.026 | |
| fatty acid alpha oxidation | GO:0001561 | 2 | 0.026 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.025 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.025 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.025 | |
| response to starvation | GO:0042594 | 65 | 0.025 | |
| fatty acid catabolic process | GO:0009062 | 25 | 0.025 | Rat |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.024 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.024 | |
| organic acid biosynthetic process | GO:0016053 | 86 | 0.023 | |
| ether lipid metabolic process | GO:0046485 | 2 | 0.023 | |
| male sex differentiation | GO:0046661 | 109 | 0.023 | |
| negative regulation of cellular amino acid metabolic process | GO:0045763 | 0 | 0.023 | |
| amine metabolic process | GO:0009308 | 45 | 0.023 | |
| nucleotide biosynthetic process | GO:0009165 | 78 | 0.022 | |
| female sex differentiation | GO:0046660 | 84 | 0.022 | |
| ether metabolic process | GO:0018904 | 2 | 0.022 | |
| regulation of mitochondrial membrane permeability involved in apoptotic process | GO:1902108 | 14 | 0.022 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.022 | |
| ribonucleotide biosynthetic process | GO:0009260 | 59 | 0.021 | |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.021 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.021 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.021 | |
| extracellular structure organization | GO:0043062 | 148 | 0.021 | |
| very long chain fatty acid metabolic process | GO:0000038 | 8 | 0.020 | |
| positive regulation of mitochondrial membrane permeability | GO:0035794 | 12 | 0.020 | |
| tricarboxylic acid metabolic process | GO:0072350 | 5 | 0.020 | |
| regulation of ossification | GO:0030278 | 112 | 0.020 | |
| dicarboxylic acid metabolic process | GO:0043648 | 18 | 0.020 | |
| positive regulation of secretion by cell | GO:1903532 | 114 | 0.020 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.020 | |
| maintenance of location | GO:0051235 | 89 | 0.019 | |
| regulation of protein processing | GO:0070613 | 96 | 0.019 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.019 | |
| response to decreased oxygen levels | GO:0036293 | 59 | 0.019 | |
| gonad development | GO:0008406 | 141 | 0.019 | |
| nucleoside diphosphate biosynthetic process | GO:0009133 | 2 | 0.019 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.019 | |
| organic hydroxy compound metabolic process | GO:1901615 | 203 | 0.019 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.019 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 81 | 0.018 | |
| positive regulation of mitochondrial membrane permeability involved in apoptotic process | GO:1902110 | 11 | 0.018 | |
| action potential | GO:0001508 | 78 | 0.018 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.018 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.018 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.018 | |
| regulation of secretion | GO:0051046 | 274 | 0.018 | |
| skeletal system morphogenesis | GO:0048705 | 203 | 0.017 | |
| purine ribonucleoside biosynthetic process | GO:0046129 | 19 | 0.017 | |
| reactive nitrogen species metabolic process | GO:2001057 | 0 | 0.017 | |
| coenzyme biosynthetic process | GO:0009108 | 23 | 0.017 | |
| nephron development | GO:0072006 | 109 | 0.017 | |
| regulation of reactive oxygen species metabolic process | GO:2000377 | 40 | 0.017 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.017 | |
| t cell proliferation | GO:0042098 | 120 | 0.017 | |
| atp metabolic process | GO:0046034 | 75 | 0.017 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.017 | |
| protein homotetramerization | GO:0051289 | 12 | 0.017 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.017 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.016 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.016 | |
| protein catabolic process | GO:0030163 | 221 | 0.016 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.016 | |
| purine containing compound biosynthetic process | GO:0072522 | 70 | 0.016 | |
| regulation of protein maturation | GO:1903317 | 96 | 0.016 | |
| lymphocyte proliferation | GO:0046651 | 164 | 0.016 | |
| mapk cascade | GO:0000165 | 281 | 0.016 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 85 | 0.015 | |
| male gonad development | GO:0008584 | 88 | 0.015 | |
| multicellular organismal signaling | GO:0035637 | 91 | 0.015 | |
| datp metabolic process | GO:0046060 | 2 | 0.015 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.015 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.015 | |
| alcohol biosynthetic process | GO:0046165 | 43 | 0.015 | |
| ribonucleoside monophosphate biosynthetic process | GO:0009156 | 9 | 0.015 | |
| neuronal action potential | GO:0019228 | 54 | 0.015 | |
| substantia nigra development | GO:0021762 | 2 | 0.015 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.014 | |
| gtp metabolic process | GO:0046039 | 144 | 0.014 | |
| t cell differentiation | GO:0030217 | 174 | 0.014 | |
| iron sulfur cluster assembly | GO:0016226 | 3 | 0.014 | |
| regulation of cell activation | GO:0050865 | 289 | 0.014 | |
| positive regulation of growth | GO:0045927 | 104 | 0.014 | |
| organelle fusion | GO:0048284 | 28 | 0.014 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.014 | |
| negative regulation of mitochondrion organization | GO:0010823 | 9 | 0.014 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.014 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 77 | 0.014 | |
| mitochondrial dna replication | GO:0006264 | 7 | 0.013 | |
| regulation of t cell activation | GO:0050863 | 170 | 0.013 | |
| cellular response to molecule of bacterial origin | GO:0071219 | 83 | 0.013 | |
| positive regulation of protein kinase activity | GO:0045860 | 144 | 0.013 | |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.013 | |
| positive regulation of ossification | GO:0045778 | 47 | 0.013 | |
| membrane fusion | GO:0061025 | 38 | 0.013 | |
| liver development | GO:0001889 | 66 | 0.013 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.013 | |
| blood coagulation | GO:0007596 | 76 | 0.013 | |
| endomembrane system organization | GO:0010256 | 147 | 0.013 | |
| positive regulation of secretion | GO:0051047 | 130 | 0.013 | |
| protein targeting | GO:0006605 | 143 | 0.012 | |
| regulation of neuron differentiation | GO:0045664 | 281 | 0.012 | |
| regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway | GO:1901028 | 7 | 0.012 | |
| negative regulation of protein maturation | GO:1903318 | 79 | 0.012 | |
| defense response to other organism | GO:0098542 | 197 | 0.012 | |
| regulation of mitochondrial membrane permeability | GO:0046902 | 17 | 0.012 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.012 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.012 | |
| positive regulation of leukocyte proliferation | GO:0070665 | 73 | 0.012 | |
| microtubule based process | GO:0007017 | 236 | 0.012 | |
| regulation of protein localization | GO:0032880 | 231 | 0.012 | |
| regulation of bone mineralization | GO:0030500 | 31 | 0.011 | |
| alcohol metabolic process | GO:0006066 | 116 | 0.011 | |
| response to lipopolysaccharide | GO:0032496 | 128 | 0.011 | |
| epithelial cell development | GO:0002064 | 159 | 0.011 | |
| fatty acid biosynthetic process | GO:0006633 | 41 | 0.011 | |
| hydrogen transport | GO:0006818 | 35 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.011 | |
| metallo sulfur cluster assembly | GO:0031163 | 3 | 0.011 | |
| leukocyte proliferation | GO:0070661 | 172 | 0.011 | |
| negative regulation of cellular amine metabolic process | GO:0033239 | 1 | 0.011 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.011 | |
| coenzyme a metabolic process | GO:0015936 | 8 | 0.011 | |
| response to peptide | GO:1901652 | 136 | 0.011 | |
| regulation of cytokine production | GO:0001817 | 266 | 0.011 | |
| placenta development | GO:0001890 | 140 | 0.011 | |
| sequestering of metal ion | GO:0051238 | 19 | 0.011 | |
| protein localization to membrane | GO:0072657 | 108 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.011 | |
| female gamete generation | GO:0007292 | 74 | 0.011 | |
| cytokine production | GO:0001816 | 319 | 0.011 | |
| phospholipid metabolic process | GO:0006644 | 87 | 0.010 | |
| cellular ion homeostasis | GO:0006873 | 165 | 0.010 | |
| lipid localization | GO:0010876 | 126 | 0.010 | |
| retinoid metabolic process | GO:0001523 | 24 | 0.010 | |
| cellular response to decreased oxygen levels | GO:0036294 | 18 | 0.010 | |
| regulation of body fluid levels | GO:0050878 | 162 | 0.010 | |
| nadh metabolic process | GO:0006734 | 1 | 0.010 | |
| cellular calcium ion homeostasis | GO:0006874 | 119 | 0.010 | |
| organic hydroxy compound biosynthetic process | GO:1901617 | 77 | 0.010 | |
| regulation of vacuole organization | GO:0044088 | 4 | 0.010 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.010 | |
| glycogen metabolic process | GO:0005977 | 32 | 0.010 | |
| pyruvate transport | GO:0006848 | 2 | 0.010 | |
| defense response to bacterium | GO:0042742 | 119 | 0.010 | |