| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 2 | 0.440 | |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.065 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.060 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 4 | 0.052 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.051 | |
| mrna processing | GO:0006397 | 63 | 0.049 | |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.049 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.041 | |
| microtubule based process | GO:0007017 | 236 | 0.041 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 2 | 0.040 | |
| rna processing | GO:0006396 | 105 | 0.035 | |
| embryonic organ morphogenesis | GO:0048562 | 276 | 0.035 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.033 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.030 | |
| rna splicing | GO:0008380 | 54 | 0.030 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.029 | |
| regulation of translation | GO:0006417 | 71 | 0.029 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.029 | |
| organelle assembly | GO:0070925 | 177 | 0.027 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.026 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.025 | |
| dephosphorylation | GO:0016311 | 129 | 0.025 | |
| engulfment of apoptotic cell | GO:0043652 | 3 | 0.025 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.025 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.025 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.025 | |
| organelle fission | GO:0048285 | 170 | 0.025 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.024 | |
| ncrna processing | GO:0034470 | 26 | 0.022 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.022 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.022 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.021 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.020 | |
| epithelial tube morphogenesis | GO:0060562 | 303 | 0.020 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.020 | |
| palate development | GO:0060021 | 76 | 0.020 | |
| mrna metabolic process | GO:0016071 | 84 | 0.020 | |
| action potential | GO:0001508 | 78 | 0.019 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.019 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.018 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.018 | |
| atp catabolic process | GO:0006200 | 55 | 0.018 | |
| protein palmitoylation | GO:0018345 | 14 | 0.018 | |
| spindle assembly involved in mitosis | GO:0090307 | 4 | 0.018 | |
| amine metabolic process | GO:0009308 | 45 | 0.018 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.018 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.018 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.017 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.017 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.017 | |
| nuclear division | GO:0000280 | 158 | 0.017 | |
| inorganic cation transmembrane transport | GO:0098662 | 207 | 0.017 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.017 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.017 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.017 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.016 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.016 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.016 | |
| organophosphate biosynthetic process | GO:0090407 | 122 | 0.016 | |
| fertilization | GO:0009566 | 127 | 0.016 | |
| oocyte construction | GO:0007308 | 2 | 0.016 | |
| pore complex assembly | GO:0046931 | 3 | 0.015 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.015 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.015 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.015 | |
| gonad development | GO:0008406 | 141 | 0.015 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.015 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 57 | 0.015 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.015 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.014 | |
| negative regulation of transforming growth factor beta receptor signaling pathway | GO:0030512 | 26 | 0.014 | |
| spindle organization | GO:0007051 | 28 | 0.014 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.014 | |
| endocytosis | GO:0006897 | 168 | 0.014 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.014 | |
| stem cell differentiation | GO:0048863 | 268 | 0.014 | |
| maturation of lsu rrna | GO:0000470 | 1 | 0.014 | |
| mitotic spindle organization | GO:0007052 | 10 | 0.014 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.014 | |
| mapk cascade | GO:0000165 | 281 | 0.014 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 58 | 0.014 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.014 | |
| small molecule biosynthetic process | GO:0044283 | 132 | 0.014 | |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.014 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.013 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.013 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.013 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.013 | Yeast |
| cation transport | GO:0006812 | 399 | 0.013 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.013 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.013 | |
| multicellular organismal signaling | GO:0035637 | 91 | 0.013 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.013 | |
| translation | GO:0006412 | 93 | 0.013 | Yeast |
| compound eye development | GO:0048749 | 1 | 0.012 | |
| nucleotide biosynthetic process | GO:0009165 | 78 | 0.012 | |
| nuclear export | GO:0051168 | 34 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.012 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 85 | 0.012 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.012 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 59 | 0.012 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.012 | |
| regulation of transmembrane transport | GO:0034762 | 128 | 0.012 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.012 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.011 | |
| regulation of ion transport | GO:0043269 | 215 | 0.011 | |
| atp metabolic process | GO:0046034 | 75 | 0.011 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.011 | |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.011 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.011 | |
| gland development | GO:0048732 | 330 | 0.011 | |
| sperm egg recognition | GO:0035036 | 37 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.011 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.011 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.011 | |
| macromolecule methylation | GO:0043414 | 120 | 0.011 | |
| regulation of endopeptidase activity | GO:0052548 | 89 | 0.011 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.011 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.011 | |
| positive regulation of sequence specific dna binding transcription factor activity | GO:0051091 | 68 | 0.011 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.011 | |
| forebrain development | GO:0030900 | 302 | 0.011 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.010 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 79 | 0.010 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.010 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.010 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.010 | |
| ribosome biogenesis | GO:0042254 | 20 | 0.010 | |
| rna localization | GO:0006403 | 23 | 0.010 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.010 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 1 | 0.010 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.010 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.010 | |
| mrna export from nucleus | GO:0006406 | 11 | 0.010 | |
