| modification dependent protein catabolic process | GO:0019941 | 133 | 0.127 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.104 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.102 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.086 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.079 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.079 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.077 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.067 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.064 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.060 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.058 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.056 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.052 | |
| ribosome biogenesis | GO:0042254 | 20 | 0.041 | Yeast |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.038 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.038 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 46 | 0.036 | |
| mitochondrion organization | GO:0007005 | 134 | 0.035 | |
| dna metabolic process | GO:0006259 | 303 | 0.035 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.034 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.034 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.033 | |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.032 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.031 | |
| gonad development | GO:0008406 | 141 | 0.031 | |
| positive regulation of protein catabolic process | GO:0045732 | 60 | 0.031 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.031 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.027 | |
| protein maturation | GO:0051604 | 176 | 0.024 | |
| negative regulation of cellular amine metabolic process | GO:0033239 | 1 | 0.024 | |
| protein ubiquitination | GO:0016567 | 171 | 0.024 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.022 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 31 | 0.022 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.021 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.020 | |
| amine metabolic process | GO:0009308 | 45 | 0.019 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 73 | 0.018 | |
| centrosome separation | GO:0051299 | 4 | 0.018 | |
| ncrna processing | GO:0034470 | 26 | 0.018 | Yeast |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 23 | 0.017 | |
| single fertilization | GO:0007338 | 82 | 0.017 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.017 | |
| stem cell differentiation | GO:0048863 | 268 | 0.017 | |
| protein catabolic process | GO:0030163 | 221 | 0.016 | |
| cristae formation | GO:0042407 | 3 | 0.016 | |
| germ cell development | GO:0007281 | 185 | 0.016 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.016 | |
| protein processing | GO:0016485 | 163 | 0.016 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.016 | |
| mapk cascade | GO:0000165 | 281 | 0.016 | |
| nonribosomal peptide biosynthetic process | GO:0019184 | 5 | 0.016 | |
| proteasome assembly | GO:0043248 | 1 | 0.015 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.015 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.015 | |
| positive regulation of nuclear division | GO:0051785 | 27 | 0.014 | |
| ribosomal small subunit biogenesis | GO:0042274 | 4 | 0.014 | |
| multicellular organismal aging | GO:0010259 | 24 | 0.014 | |
| inflammatory response | GO:0006954 | 244 | 0.014 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.014 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.013 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.013 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.013 | |
| chromatin organization | GO:0006325 | 206 | 0.013 | |
| central nervous system neuron differentiation | GO:0021953 | 162 | 0.013 | |
| t cell activation | GO:0042110 | 289 | 0.012 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.012 | |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.012 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.012 | |
| skeletal system development | GO:0001501 | 356 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.012 | |
| regulation of embryonic development | GO:0045995 | 71 | 0.012 | |
| fertilization | GO:0009566 | 127 | 0.012 | |
| ossification | GO:0001503 | 216 | 0.012 | |
| regulation of inflammatory response | GO:0050727 | 147 | 0.012 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.012 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.011 | |
| microtubule based process | GO:0007017 | 236 | 0.011 | |
| generation of ovulation cycle rhythm | GO:0060112 | 1 | 0.011 | |
| coenzyme biosynthetic process | GO:0009108 | 23 | 0.011 | |
| nuclear import | GO:0051170 | 95 | 0.011 | |
| protein import | GO:0017038 | 101 | 0.011 | |
| cell division | GO:0051301 | 120 | 0.011 | |
| oocyte axis specification | GO:0007309 | 2 | 0.011 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.011 | |
| protein localization to organelle | GO:0033365 | 185 | 0.011 | |
| regulation of response to dna damage stimulus | GO:2001020 | 34 | 0.011 | |
| regulation of protein ubiquitination | GO:0031396 | 52 | 0.011 | |
| signal transduction by p53 class mediator | GO:0072331 | 51 | 0.011 | |
| nuclear transport | GO:0051169 | 139 | 0.011 | |
| cell adhesion | GO:0007155 | 329 | 0.011 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.011 | |
| negative regulation of inflammatory response | GO:0050728 | 61 | 0.011 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.010 | |
| blastocyst development | GO:0001824 | 80 | 0.010 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.010 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.010 | |
| oocyte construction | GO:0007308 | 2 | 0.010 | |
| endocytosis | GO:0006897 | 168 | 0.010 | |
| negative regulation of cell development | GO:0010721 | 169 | 0.010 | |
| dendrite development | GO:0016358 | 115 | 0.010 | |
| regulation of mitotic cell cycle | GO:0007346 | 126 | 0.010 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.010 | |
| forebrain development | GO:0030900 | 302 | 0.010 | |
| cell maturation | GO:0048469 | 127 | 0.010 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.010 | |
| dna replication | GO:0006260 | 52 | 0.010 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.010 | |
