| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.933 | Human |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.923 | Human |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.921 | Human |
| rna processing | GO:0006396 | 105 | 0.833 | Human Fly |
| mrna processing | GO:0006397 | 63 | 0.798 | Human |
| mrna metabolic process | GO:0016071 | 84 | 0.763 | Human |
| rna splicing | GO:0008380 | 54 | 0.539 | Human Fly |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.159 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.158 | Human |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 8 | 0.155 | Human |
| regulation of embryonic development | GO:0045995 | 71 | 0.136 | Fly |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.120 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 32 | 0.110 | Human |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.104 | Human |
| rna localization | GO:0006403 | 23 | 0.084 | Fly |
| stem cell differentiation | GO:0048863 | 268 | 0.084 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.078 | |
| regulation of mrna processing | GO:0050684 | 41 | 0.076 | Human |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.075 | |
| microtubule based process | GO:0007017 | 236 | 0.066 | Fly |
| nitrogen compound transport | GO:0071705 | 271 | 0.065 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.064 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.064 | Fly |
| stem cell maintenance | GO:0019827 | 130 | 0.055 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.055 | Worm |
| regulation of cell cycle | GO:0051726 | 281 | 0.053 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.049 | |
| nucleic acid transport | GO:0050657 | 18 | 0.048 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.048 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.046 | |
| chromatin modification | GO:0016568 | 187 | 0.045 | |
| anterior posterior axis specification embryo | GO:0008595 | 9 | 0.044 | Fly |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.043 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.041 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.041 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.040 | |
| segmentation | GO:0035282 | 93 | 0.040 | Fly |
| nuclear export | GO:0051168 | 34 | 0.039 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.038 | Fly |
| stem cell development | GO:0048864 | 219 | 0.037 | |
| nuclear transport | GO:0051169 | 139 | 0.036 | |
| oogenesis | GO:0048477 | 56 | 0.035 | Fly |
| ossification | GO:0001503 | 216 | 0.033 | |
| negative regulation of myeloid cell differentiation | GO:0045638 | 38 | 0.033 | |
| dna metabolic process | GO:0006259 | 303 | 0.031 | |
| oocyte axis specification | GO:0007309 | 2 | 0.031 | Fly |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.031 | Fly |
| blastoderm segmentation | GO:0007350 | 13 | 0.030 | Fly |
| establishment of rna localization | GO:0051236 | 18 | 0.029 | |
| cell division | GO:0051301 | 120 | 0.029 | Worm |
| regulation of rna splicing | GO:0043484 | 37 | 0.027 | Human |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.026 | Human |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.026 | Fly |
| camera type eye development | GO:0043010 | 266 | 0.023 | |
| chromatin organization | GO:0006325 | 206 | 0.023 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.023 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.023 | Human |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.022 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.022 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.022 | |
| paraxial mesodermal cell fate commitment | GO:0048343 | 2 | 0.022 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.021 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.021 | |
| positive regulation of cell division | GO:0051781 | 31 | 0.021 | |
| deoxyribose phosphate metabolic process | GO:0019692 | 9 | 0.021 | |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.020 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.020 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.020 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.020 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.019 | Human |
| regulation of mitotic cell cycle | GO:0007346 | 126 | 0.018 | |
| myeloid cell differentiation | GO:0030099 | 233 | 0.018 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.018 | Human |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.018 | |
| pole plasm assembly | GO:0007315 | 2 | 0.018 | Fly |
| negative regulation of molecular function | GO:0044092 | 258 | 0.018 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.018 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.017 | |
| forebrain development | GO:0030900 | 302 | 0.017 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.017 | Fly |
| nucleotide metabolic process | GO:0009117 | 332 | 0.017 | |
| histone modification | GO:0016570 | 159 | 0.017 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.017 | |
| rna catabolic process | GO:0006401 | 29 | 0.016 | Human |
| amygdala development | GO:0021764 | 2 | 0.016 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.016 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.016 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.016 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.015 | |
| synapse organization | GO:0050808 | 125 | 0.015 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 10 | 0.015 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.015 | |
| dna repair | GO:0006281 | 107 | 0.015 | |
| ribosomal small subunit assembly | GO:0000028 | 1 | 0.015 | |
| nuclear division | GO:0000280 | 158 | 0.014 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.014 | |
| embryonic axis specification | GO:0000578 | 30 | 0.014 | Fly |
| developmental maturation | GO:0021700 | 193 | 0.014 | Fly |
| gonad development | GO:0008406 | 141 | 0.014 | Worm |
| regulation of meiotic cell cycle | GO:0051445 | 34 | 0.014 | |
| positive regulation of kinase activity | GO:0033674 | 155 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.014 | Human |
| mitotic nuclear division | GO:0007067 | 48 | 0.014 | |
| mitotic spindle organization | GO:0007052 | 10 | 0.014 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 3 | 0.014 | |
| single organism nuclear import | GO:1902593 | 95 | 0.013 | |
| protein import | GO:0017038 | 101 | 0.013 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.013 | Human |
| cell maturation | GO:0048469 | 127 | 0.013 | Fly |
| protein acylation | GO:0043543 | 64 | 0.013 | |
| amine metabolic process | GO:0009308 | 45 | 0.013 | |
| proteasome assembly | GO:0043248 | 1 | 0.013 | |
| skeletal system development | GO:0001501 | 356 | 0.013 | |
| retina development in camera type eye | GO:0060041 | 119 | 0.012 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.012 | |
| nucleotide excision repair | GO:0006289 | 13 | 0.012 | |
| regulation of myeloid cell differentiation | GO:0045637 | 96 | 0.012 | |
| rna interference | GO:0016246 | 2 | 0.011 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.011 | |
| regulation of nucleoside metabolic process | GO:0009118 | 130 | 0.011 | |
| ribosomal small subunit biogenesis | GO:0042274 | 4 | 0.011 | |
| nuclear import | GO:0051170 | 95 | 0.011 | |
| histone acetylation | GO:0016573 | 41 | 0.011 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.011 | |
| protein import into nucleus | GO:0006606 | 95 | 0.011 | |
| appendage development | GO:0048736 | 166 | 0.010 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.010 | |
| dna templated transcription elongation | GO:0006354 | 13 | 0.010 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.010 | |
| connective tissue development | GO:0061448 | 179 | 0.010 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.010 | Fly |
| regulation of immune complex clearance by monocytes and macrophages | GO:0090264 | 2 | 0.010 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.010 | |