| macromolecule catabolic process | GO:0009057 | 281 | 0.227 | |
| protein catabolic process | GO:0030163 | 221 | 0.156 | |
| chromatin modification | GO:0016568 | 187 | 0.103 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.098 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.095 | |
| histone modification | GO:0016570 | 159 | 0.093 | |
| iron ion homeostasis | GO:0055072 | 36 | 0.088 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.081 | |
| response to oxidative stress | GO:0006979 | 123 | 0.079 | |
| pigment biosynthetic process | GO:0046148 | 26 | 0.074 | |
| oxidation reduction process | GO:0055114 | 342 | 0.070 | |
| negative regulation of immune system process | GO:0002683 | 209 | 0.068 | |
| cellular homeostasis | GO:0019725 | 240 | 0.065 | |
| plasma membrane organization | GO:0007009 | 90 | 0.064 | |
| maintenance of location | GO:0051235 | 89 | 0.063 | |
| dephosphorylation | GO:0016311 | 129 | 0.063 | |
| regulation of protein transport | GO:0051223 | 163 | 0.060 | |
| cofactor metabolic process | GO:0051186 | 80 | 0.057 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.057 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.055 | |
| protein modification by small protein removal | GO:0070646 | 21 | 0.054 | |
| protein targeting | GO:0006605 | 143 | 0.054 | |
| cofactor biosynthetic process | GO:0051188 | 41 | 0.050 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.050 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.047 | Yeast |
| cellular amine metabolic process | GO:0044106 | 44 | 0.047 | |
| nuclear transport | GO:0051169 | 139 | 0.047 | |
| endomembrane system organization | GO:0010256 | 147 | 0.046 | |
| amine metabolic process | GO:0009308 | 45 | 0.046 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.046 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.045 | Yeast |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.043 | |
| cellular chemical homeostasis | GO:0055082 | 215 | 0.043 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.042 | |
| chromatin organization | GO:0006325 | 206 | 0.041 | |
| cation transport | GO:0006812 | 399 | 0.041 | |
| intracellular protein transport | GO:0006886 | 204 | 0.041 | |
| circulatory system process | GO:0003013 | 197 | 0.040 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.039 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.039 | |
| coenzyme metabolic process | GO:0006732 | 52 | 0.039 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.038 | |
| transmembrane transport | GO:0055085 | 412 | 0.038 | Yeast |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.037 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.036 | Yeast |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.036 | Yeast |
| heme biosynthetic process | GO:0006783 | 12 | 0.034 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.033 | Yeast |
| negative regulation of phosphorylation | GO:0042326 | 166 | 0.033 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.032 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.032 | Yeast |
| cardiac muscle hypertrophy in response to stress | GO:0014898 | 10 | 0.032 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.032 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.032 | |
| digestive system development | GO:0055123 | 200 | 0.031 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.031 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.031 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.031 | Yeast |
| organic hydroxy compound catabolic process | GO:1901616 | 25 | 0.030 | |
| telencephalon development | GO:0021537 | 186 | 0.030 | |
| chromosome segregation | GO:0007059 | 48 | 0.030 | |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.030 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.030 | |
| anatomical structure homeostasis | GO:0060249 | 145 | 0.029 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.029 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.029 | Yeast |
| organelle localization | GO:0051640 | 179 | 0.029 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.028 | |
| digestive tract development | GO:0048565 | 190 | 0.028 | |
| calcium ion transport | GO:0006816 | 159 | 0.028 | |
| mitochondrial translation | GO:0032543 | 4 | 0.028 | |
| gastrulation | GO:0007369 | 116 | 0.028 | |
| alpha amino acid metabolic process | GO:1901605 | 59 | 0.027 | |
| multicellular organismal homeostasis | GO:0048871 | 164 | 0.027 | Worm |
| myeloid cell differentiation | GO:0030099 | 233 | 0.026 | |
| muscle tissue development | GO:0060537 | 308 | 0.026 | |
| regulation of protein targeting | GO:1903533 | 61 | 0.026 | |
| cellular transition metal ion homeostasis | GO:0046916 | 32 | 0.025 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.025 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.025 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.025 | Yeast |
| anion transport | GO:0006820 | 177 | 0.025 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.024 | |
| protein import into nucleus | GO:0006606 | 95 | 0.024 | |
| dendrite development | GO:0016358 | 115 | 0.023 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.023 | Yeast |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.023 | |
| cellular metal ion homeostasis | GO:0006875 | 151 | 0.023 | |
| meiotic cell cycle process | GO:1903046 | 77 | 0.023 | |
| regulation of protein import into nucleus | GO:0042306 | 52 | 0.023 | |
| protein localization to organelle | GO:0033365 | 185 | 0.022 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.022 | |
| carbohydrate homeostasis | GO:0033500 | 128 | 0.022 | |
| forebrain development | GO:0030900 | 302 | 0.022 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.022 | |
| cation homeostasis | GO:0055080 | 212 | 0.022 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.021 | |
| digestive tract morphogenesis | GO:0048546 | 147 | 0.021 | |
| response to growth factor | GO:0070848 | 198 | 0.021 | |
| generation of precursor metabolites and energy | GO:0006091 | 103 | 0.021 | |
| protein import | GO:0017038 | 101 | 0.020 | |
| alcohol metabolic process | GO:0006066 | 116 | 0.020 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.020 | Yeast |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.020 | Yeast |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.020 | |
| lymphocyte mediated immunity | GO:0002449 | 139 | 0.020 | |
| protein deubiquitination | GO:0016579 | 19 | 0.020 | |
| rho protein signal transduction | GO:0007266 | 32 | 0.020 | |
| dna metabolic process | GO:0006259 | 303 | 0.020 | |
| lipid biosynthetic process | GO:0008610 | 179 | 0.020 | |
| cellular response to growth factor stimulus | GO:0071363 | 197 | 0.020 | |
| protein maturation | GO:0051604 | 176 | 0.019 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.019 | |
| inositol phosphate catabolic process | GO:0071545 | 4 | 0.019 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.019 | |
| reactive oxygen species metabolic process | GO:0072593 | 84 | 0.019 | |
| glucose homeostasis | GO:0042593 | 128 | 0.019 | |
| single organism nuclear import | GO:1902593 | 95 | 0.019 | |
| negative regulation of golgi to plasma membrane protein transport | GO:0042997 | 3 | 0.018 | |
| cellular ion homeostasis | GO:0006873 | 165 | 0.018 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 80 | 0.018 | Yeast |
| response to inorganic substance | GO:0010035 | 96 | 0.018 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.018 | Yeast |
| regulation of protein localization | GO:0032880 | 231 | 0.018 | |
| epithelial tube morphogenesis | GO:0060562 | 303 | 0.017 | |
| regulation of ion transport | GO:0043269 | 215 | 0.017 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.017 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.017 | |
| lipoprotein metabolic process | GO:0042157 | 43 | 0.017 | |
| skeletal muscle organ development | GO:0060538 | 163 | 0.017 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.017 | Yeast |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.017 | |
| amide transport | GO:0042886 | 138 | 0.017 | |
| membrane organization | GO:0061024 | 245 | 0.017 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.017 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.017 | Yeast |
| response to endoplasmic reticulum stress | GO:0034976 | 53 | 0.016 | |
| protein localization to membrane | GO:0072657 | 108 | 0.016 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.016 | Yeast |
| mapk cascade | GO:0000165 | 281 | 0.016 | |
| lateral inhibition | GO:0046331 | 1 | 0.016 | |
| striated muscle cell development | GO:0055002 | 125 | 0.016 | |
| leukocyte mediated cytotoxicity | GO:0001909 | 62 | 0.016 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.016 | |
| rna interference | GO:0016246 | 2 | 0.016 | |
| tetrapyrrole metabolic process | GO:0033013 | 22 | 0.015 | |
| response to transforming growth factor beta | GO:0071559 | 88 | 0.015 | |
| gtp catabolic process | GO:0006184 | 143 | 0.015 | |
| hyperosmotic response | GO:0006972 | 4 | 0.015 | |
| blood circulation | GO:0008015 | 195 | 0.015 | |
| protein acylation | GO:0043543 | 64 | 0.015 | |
| guanosine containing compound metabolic process | GO:1901068 | 144 | 0.015 | |
| defense response to other organism | GO:0098542 | 197 | 0.015 | |
| rna phosphodiester bond hydrolysis exonucleolytic | GO:0090503 | 4 | 0.015 | |
| amp metabolic process | GO:0046033 | 4 | 0.015 | |
| tissue homeostasis | GO:0001894 | 115 | 0.015 | |
| translation | GO:0006412 | 93 | 0.015 | |
| response to reactive oxygen species | GO:0000302 | 56 | 0.015 | |
| nucleobase containing compound transport | GO:0015931 | 27 | 0.014 | |
| immune effector process | GO:0002252 | 321 | 0.014 | |
| multicellular organism growth | GO:0035264 | 161 | 0.014 | Worm |
| folic acid containing compound metabolic process | GO:0006760 | 3 | 0.014 | |
| regulation of ion transmembrane transport | GO:0034765 | 119 | 0.014 | |
| cellular carbohydrate metabolic process | GO:0044262 | 119 | 0.014 | |
| negative regulation of protein phosphorylation | GO:0001933 | 126 | 0.014 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.014 | Yeast |
| compound eye development | GO:0048749 | 1 | 0.014 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.014 | |
| lipid localization | GO:0010876 | 126 | 0.014 | |
| hippocampus development | GO:0021766 | 52 | 0.014 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.014 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.014 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.014 | |
| spindle assembly involved in mitosis | GO:0090307 | 4 | 0.014 | |
| leukocyte mediated immunity | GO:0002443 | 174 | 0.014 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.013 | |
| phosphorylated carbohydrate dephosphorylation | GO:0046838 | 4 | 0.013 | |
| pallium development | GO:0021543 | 120 | 0.013 | |
| cell cycle g1 s phase transition | GO:0044843 | 57 | 0.013 | |
| positive regulation of secretion | GO:0051047 | 130 | 0.013 | |
| cell killing | GO:0001906 | 67 | 0.013 | |
| protein localization to synapse | GO:0035418 | 11 | 0.013 | |
| rna processing | GO:0006396 | 105 | 0.013 | |
| positive regulation of nfat protein import into nucleus | GO:0051533 | 1 | 0.013 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 57 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.013 | Yeast |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.013 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 2 | 0.013 | |
| cellular response to transforming growth factor beta stimulus | GO:0071560 | 88 | 0.013 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.013 | |
| regulation of peptidase activity | GO:0052547 | 96 | 0.012 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.012 | Yeast |
| olfactory learning | GO:0008355 | 2 | 0.012 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.012 | Yeast |
| respiratory system development | GO:0060541 | 190 | 0.012 | |
| locomotory behavior | GO:0007626 | 195 | 0.012 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.012 | Yeast |
| regulation of lipid metabolic process | GO:0019216 | 118 | 0.012 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.012 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.012 | |
| blastocyst development | GO:0001824 | 80 | 0.012 | |
| regulation of protein localization to nucleus | GO:1900180 | 60 | 0.012 | |
| mitochondrion organization | GO:0007005 | 134 | 0.012 | |
| action potential | GO:0001508 | 78 | 0.012 | |
| coenzyme biosynthetic process | GO:0009108 | 23 | 0.012 | |
| regulation of body fluid levels | GO:0050878 | 162 | 0.012 | |
| lymphocyte proliferation | GO:0046651 | 164 | 0.012 | |
| muscle cell development | GO:0055001 | 133 | 0.012 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 49 | 0.012 | |
| gtp metabolic process | GO:0046039 | 144 | 0.012 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.012 | |
| microtubule severing | GO:0051013 | 5 | 0.012 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 81 | 0.012 | Yeast |
| body fluid secretion | GO:0007589 | 53 | 0.012 | |
| regulation of cell activation | GO:0050865 | 289 | 0.012 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 77 | 0.012 | |
| phospholipid metabolic process | GO:0006644 | 87 | 0.012 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.011 | |
| negative regulation of kinase activity | GO:0033673 | 81 | 0.011 | |
| myeloid cell homeostasis | GO:0002262 | 114 | 0.011 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 159 | 0.011 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.011 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.011 | |
| engulfment of apoptotic cell | GO:0043652 | 3 | 0.011 | |
| heme metabolic process | GO:0042168 | 16 | 0.011 | |
| circadian regulation of gene expression | GO:0032922 | 48 | 0.011 | |
| lipoprotein catabolic process | GO:0042159 | 7 | 0.011 | |
| regulation of secretion | GO:0051046 | 274 | 0.011 | |
| organelle fission | GO:0048285 | 170 | 0.011 | |
| sequestering of metal ion | GO:0051238 | 19 | 0.011 | |
| rna transport | GO:0050658 | 18 | 0.011 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 139 | 0.011 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.011 | Yeast |
| learning or memory | GO:0007611 | 148 | 0.011 | |
| positive regulation of growth | GO:0045927 | 104 | 0.011 | Worm |
| sensory perception | GO:0007600 | 245 | 0.011 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.011 | |
| cytokine production | GO:0001816 | 319 | 0.011 | |
| regulation of lipid biosynthetic process | GO:0046890 | 54 | 0.011 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.011 | |
| pigment metabolic process | GO:0042440 | 32 | 0.011 | |
| phosphatidylinositol metabolic process | GO:0046488 | 45 | 0.011 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.011 | |
| response to temperature stimulus | GO:0009266 | 55 | 0.011 | |
| regulation of translation | GO:0006417 | 71 | 0.010 | |
| muscle system process | GO:0003012 | 141 | 0.010 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.010 | |
| protein ubiquitination | GO:0016567 | 171 | 0.010 | |
| monocarboxylic acid metabolic process | GO:0032787 | 191 | 0.010 | |
| posttranscriptional gene silencing | GO:0016441 | 10 | 0.010 | |
| positive regulation of muscle adaptation | GO:0014744 | 2 | 0.010 | |
| stem cell maintenance | GO:0019827 | 130 | 0.010 | |
| regulation of system process | GO:0044057 | 200 | 0.010 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.010 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.010 | |
| endocytosis | GO:0006897 | 168 | 0.010 | |
| nuclear import | GO:0051170 | 95 | 0.010 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.010 | |
