| macroautophagy | GO:0016236 | 21 | 0.497 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.267 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.237 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.207 | |
| compound eye development | GO:0048749 | 1 | 0.168 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.164 | |
| vesicle localization | GO:0051648 | 86 | 0.154 | |
| cellular response to nutrient levels | GO:0031669 | 64 | 0.140 | |
| intracellular protein transport | GO:0006886 | 204 | 0.103 | Yeast |
| melanosome localization | GO:0032400 | 12 | 0.101 | |
| protein catabolic process | GO:0030163 | 221 | 0.097 | |
| phosphatidic acid biosynthetic process | GO:0006654 | 2 | 0.092 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.086 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.071 | |
| virion assembly | GO:0019068 | 1 | 0.070 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.069 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.068 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.068 | |
| cellular response to extracellular stimulus | GO:0031668 | 81 | 0.067 | |
| spermatogenesis | GO:0007283 | 284 | 0.065 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.058 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.058 | |
| autophagy | GO:0006914 | 45 | 0.057 | |
| oocyte axis specification | GO:0007309 | 2 | 0.055 | |
| placenta development | GO:0001890 | 140 | 0.053 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.053 | Yeast |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.052 | |
| microtubule based process | GO:0007017 | 236 | 0.052 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.051 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.048 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.047 | |
| negative regulation of synapse assembly | GO:0051964 | 3 | 0.044 | |
| male gamete generation | GO:0048232 | 285 | 0.043 | |
| protein ubiquitination | GO:0016567 | 171 | 0.042 | |
| establishment of vesicle localization | GO:0051650 | 81 | 0.040 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.040 | |
| establishment or maintenance of cell polarity | GO:0007163 | 86 | 0.039 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.039 | Yeast |
| melanosome transport | GO:0032402 | 11 | 0.038 | |
| positive regulation of cell development | GO:0010720 | 237 | 0.037 | |
| regulation of secretion | GO:0051046 | 274 | 0.037 | |
| axoneme assembly | GO:0035082 | 15 | 0.037 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.036 | |
| dorsal ventral neural tube patterning | GO:0021904 | 28 | 0.036 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.036 | |
| protein targeting | GO:0006605 | 143 | 0.034 | Yeast |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.034 | |
| spermatid development | GO:0007286 | 108 | 0.034 | |
| single organism nuclear import | GO:1902593 | 95 | 0.034 | |
| germ cell development | GO:0007281 | 185 | 0.033 | |
| regulation of autophagic vacuole assembly | GO:2000785 | 4 | 0.033 | |
| response to starvation | GO:0042594 | 65 | 0.033 | |
| small molecule catabolic process | GO:0044282 | 71 | 0.032 | |
| spermatid differentiation | GO:0048515 | 115 | 0.031 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.031 | |
| response to nutrient levels | GO:0031667 | 109 | 0.030 | |
| regulation of protein maturation | GO:1903317 | 96 | 0.030 | |
| pigment granule transport | GO:0051904 | 12 | 0.029 | |
| glucose homeostasis | GO:0042593 | 128 | 0.029 | |
| establishment of melanosome localization | GO:0032401 | 11 | 0.028 | |
| axon cargo transport | GO:0008088 | 33 | 0.028 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.028 | |
| oocyte construction | GO:0007308 | 2 | 0.027 | |
| protein processing | GO:0016485 | 163 | 0.027 | |
| regulation of actin filament based process | GO:0032970 | 99 | 0.027 | |
| positive regulation of cell projection organization | GO:0031346 | 95 | 0.027 | |
| carbohydrate homeostasis | GO:0033500 | 128 | 0.027 | |
| protein secretion | GO:0009306 | 111 | 0.026 | |
| regulation of macroautophagy | GO:0016241 | 12 | 0.026 | |
| glycoprotein metabolic process | GO:0009100 | 116 | 0.026 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.025 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.024 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.024 | |
| positive regulation of cellular protein catabolic process | GO:1903364 | 34 | 0.024 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.024 | |
| phosphatidic acid metabolic process | GO:0046473 | 2 | 0.024 | |
| regulation of vacuole organization | GO:0044088 | 4 | 0.024 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.023 | |
| positive regulation of microtubule polymerization or depolymerization | GO:0031112 | 3 | 0.022 | |
| protein import into peroxisome matrix | GO:0016558 | 3 | 0.022 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.022 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.022 | |
| protein localization to organelle | GO:0033365 | 185 | 0.021 | Yeast |
| nitrogen compound transport | GO:0071705 | 271 | 0.021 | |
| multicellular organism growth | GO:0035264 | 161 | 0.021 | |
| negative regulation of endothelial cell migration | GO:0010596 | 4 | 0.021 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.021 | |
| protein transport into membrane raft | GO:0032596 | 4 | 0.020 | |
| lateral line system development | GO:0048925 | 1 | 0.020 | |
| protein localization to membrane | GO:0072657 | 108 | 0.020 | Yeast |
| establishment of organelle localization | GO:0051656 | 122 | 0.020 | |
| cellular pigmentation | GO:0033059 | 20 | 0.019 | |
| cell maturation | GO:0048469 | 127 | 0.019 | |
| establishment of pigment granule localization | GO:0051905 | 12 | 0.019 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.019 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.019 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.019 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.018 | |
| heterochromatin assembly | GO:0031507 | 2 | 0.018 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.018 | |
| positive regulation of transmembrane receptor protein serine threonine kinase signaling pathway | GO:0090100 | 43 | 0.018 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.018 | |
| sensory perception of touch | GO:0050975 | 2 | 0.018 | |
| cellular response to starvation | GO:0009267 | 57 | 0.017 | |
| protein glycosylation | GO:0006486 | 55 | 0.017 | |
| regulation of cell motility | GO:2000145 | 236 | 0.017 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.017 | |
| protein maturation | GO:0051604 | 176 | 0.017 | |
| regulation of transmembrane receptor protein serine threonine kinase signaling pathway | GO:0090092 | 112 | 0.017 | |
| lipid localization | GO:0010876 | 126 | 0.017 | |
| cellular response to hormone stimulus | GO:0032870 | 150 | 0.017 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.017 | |
| positive regulation of neuron differentiation | GO:0045666 | 141 | 0.017 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.016 | |
| negative regulation of protein phosphorylation | GO:0001933 | 126 | 0.016 | |
| embryonic placenta development | GO:0001892 | 98 | 0.016 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.016 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.016 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.016 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.016 | |
| positive regulation of mitotic sister chromatid separation | GO:1901970 | 2 | 0.016 | |
| protein import | GO:0017038 | 101 | 0.016 | |
| amide transport | GO:0042886 | 138 | 0.016 | |
| golgi vesicle transport | GO:0048193 | 30 | 0.016 | |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.016 | |
| regulation of cellular protein catabolic process | GO:1903362 | 61 | 0.016 | |
| response to peptide | GO:1901652 | 136 | 0.016 | |
| dna metabolic process | GO:0006259 | 303 | 0.015 | |
| exocytosis | GO:0006887 | 121 | 0.015 | |
| retrograde transport endosome to golgi | GO:0042147 | 2 | 0.015 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.015 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.015 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.015 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.015 | |
| protein polyubiquitination | GO:0000209 | 33 | 0.015 | |
| positive regulation of neuron projection development | GO:0010976 | 79 | 0.015 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.015 | |
| regionalization | GO:0003002 | 337 | 0.015 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.015 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 46 | 0.014 | |
| membrane organization | GO:0061024 | 245 | 0.014 | Yeast |
| negative regulation of phosphorylation | GO:0042326 | 166 | 0.014 | |
| female gamete generation | GO:0007292 | 74 | 0.014 | |
| gliogenesis | GO:0042063 | 141 | 0.014 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.014 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.014 | |
| cellular response to lipid | GO:0071396 | 145 | 0.014 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.014 | |
| regulation of epithelial cell proliferation | GO:0050678 | 141 | 0.014 | |
| anion transport | GO:0006820 | 177 | 0.014 | |
| skin development | GO:0043588 | 220 | 0.014 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.014 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.014 | |
| positive regulation of vesicle fusion | GO:0031340 | 2 | 0.014 | |
| regulation of cell projection organization | GO:0031344 | 206 | 0.013 | |
| synaptic transmission | GO:0007268 | 329 | 0.013 | Fly |
| leukocyte differentiation | GO:0002521 | 342 | 0.013 | |
| meiosis i | GO:0007127 | 60 | 0.013 | |
| negative regulation of ras gtpase activity | GO:0034261 | 3 | 0.013 | |
| cellular response to cytokine stimulus | GO:0071345 | 189 | 0.013 | |
| protein oligomerization | GO:0051259 | 67 | 0.013 | |
| dicarboxylic acid catabolic process | GO:0043649 | 2 | 0.013 | |
| vacuole organization | GO:0007033 | 38 | 0.013 | |
| protein import into nucleus | GO:0006606 | 95 | 0.013 | |
| negative regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032435 | 15 | 0.013 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.013 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.013 | |
| organelle fission | GO:0048285 | 170 | 0.013 | |
| regulation of peptide secretion | GO:0002791 | 77 | 0.013 | |
| mitochondrion organization | GO:0007005 | 134 | 0.013 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.013 | |
| positive regulation of fibroblast growth factor receptor signaling pathway | GO:0045743 | 3 | 0.013 | |
| developmental maturation | GO:0021700 | 193 | 0.012 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.012 | |
| pigment granule localization | GO:0051875 | 13 | 0.012 | |
| regulation of exit from mitosis | GO:0007096 | 1 | 0.012 | |
| rna splicing | GO:0008380 | 54 | 0.012 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.012 | |
| plasma membrane organization | GO:0007009 | 90 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.012 | |
| negative regulation of proteolysis involved in cellular protein catabolic process | GO:1903051 | 22 | 0.012 | |
| stem cell differentiation | GO:0048863 | 268 | 0.012 | |
| positive regulation of interleukin 5 secretion | GO:2000664 | 1 | 0.012 | |
| pigmentation | GO:0043473 | 71 | 0.012 | |
| sphingosine 1 phosphate signaling pathway | GO:0003376 | 3 | 0.012 | |
| nuclear division | GO:0000280 | 158 | 0.012 | |
| adiponectin activated signaling pathway | GO:0033211 | 4 | 0.012 | |
| positive regulation of nucleotide catabolic process | GO:0030813 | 88 | 0.012 | |
| negative regulation of cellular amino acid metabolic process | GO:0045763 | 0 | 0.011 | |
| regulation of synapse structural plasticity | GO:0051823 | 4 | 0.011 | |
| habituation | GO:0046959 | 3 | 0.011 | |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 23 | 0.011 | |
| endomembrane system organization | GO:0010256 | 147 | 0.011 | |
| regulation of neuron differentiation | GO:0045664 | 281 | 0.011 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.011 | |
| polysaccharide metabolic process | GO:0005976 | 39 | 0.011 | |
| positive regulation of secretion by cell | GO:1903532 | 114 | 0.011 | |
| synapsis | GO:0007129 | 34 | 0.011 | |
| organic acid transport | GO:0015849 | 101 | 0.011 | |
| autophagic vacuole assembly | GO:0000045 | 13 | 0.011 | |
| intrinsic apoptotic signaling pathway | GO:0097193 | 132 | 0.011 | |
| synapse organization | GO:0050808 | 125 | 0.011 | |
| regulation of leukocyte differentiation | GO:1902105 | 159 | 0.011 | |
| sensory system development | GO:0048880 | 3 | 0.011 | |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.011 | |
| locomotory behavior | GO:0007626 | 195 | 0.011 | |
| positive regulation of secretion | GO:0051047 | 130 | 0.011 | |
| negative regulation of protein processing | GO:0010955 | 79 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.011 | |
| positive regulation of mirna metabolic process | GO:2000630 | 1 | 0.010 | |
| microtubule based transport | GO:0010970 | 50 | 0.010 | |
| protein localization to mitochondrion | GO:0070585 | 15 | 0.010 | |
| regulation of feeding behavior | GO:0060259 | 3 | 0.010 | |
| regulation of cell size | GO:0008361 | 72 | 0.010 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.010 | |
