| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.057 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.053 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.044 | |
| protein ubiquitination | GO:0016567 | 171 | 0.041 | |
| intracellular protein transport | GO:0006886 | 204 | 0.040 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.036 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.035 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.034 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.031 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.030 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.030 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.029 | |
| regulation of protein transport | GO:0051223 | 163 | 0.028 | |
| immune effector process | GO:0002252 | 321 | 0.027 | |
| dna metabolic process | GO:0006259 | 303 | 0.027 | |
| membrane organization | GO:0061024 | 245 | 0.027 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.026 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.026 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.026 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.026 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.025 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.024 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.024 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.023 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.022 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.022 | |
| protein localization to organelle | GO:0033365 | 185 | 0.022 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.021 | |
| amine metabolic process | GO:0009308 | 45 | 0.021 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.021 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.021 | |
| canonical wnt signaling pathway | GO:0060070 | 130 | 0.021 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.021 | |
| muscle tissue development | GO:0060537 | 308 | 0.020 | |
| regulation of anatomical structure size | GO:0090066 | 178 | 0.020 | |
| t cell activation | GO:0042110 | 289 | 0.020 | |
| mitochondrion degradation | GO:0000422 | 3 | 0.020 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.019 | |
| regulation of reactive oxygen species metabolic process | GO:2000377 | 40 | 0.019 | |
| histone h4 k16 acetylation | GO:0043984 | 3 | 0.018 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.018 | |
| endomembrane system organization | GO:0010256 | 147 | 0.018 | |
| regulation of protein localization | GO:0032880 | 231 | 0.018 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.018 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.018 | |
| chromosome organization involved in meiosis | GO:0070192 | 39 | 0.017 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.017 | |
| sequestering of calcium ion | GO:0051208 | 18 | 0.017 | |
| regulation of cell activation | GO:0050865 | 289 | 0.017 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.017 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.016 | |
| protein targeting | GO:0006605 | 143 | 0.016 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.016 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.016 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.016 | |
| positive regulation of cell activation | GO:0050867 | 158 | 0.016 | |
| cellular homeostasis | GO:0019725 | 240 | 0.016 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.016 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.016 | |
| misfolded protein transport | GO:0070843 | 1 | 0.016 | |
| mitochondrion organization | GO:0007005 | 134 | 0.016 | |
| negative regulation of immune system process | GO:0002683 | 209 | 0.016 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.016 | |
| mitochondrion transport along microtubule | GO:0047497 | 3 | 0.016 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.015 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.015 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.015 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.015 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 73 | 0.015 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.015 | |
| reactive oxygen species metabolic process | GO:0072593 | 84 | 0.015 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.015 | |
| dna endoreduplication | GO:0042023 | 4 | 0.015 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.015 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.015 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.014 | |
| organelle fission | GO:0048285 | 170 | 0.014 | |
| establishment of protein localization to peroxisome | GO:0072663 | 4 | 0.014 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.014 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.014 | |
| spermatid differentiation | GO:0048515 | 115 | 0.014 | |
| protein maturation | GO:0051604 | 176 | 0.014 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.014 | |
| inflammatory response | GO:0006954 | 244 | 0.013 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.013 | |
| regulation of homeostatic process | GO:0032844 | 182 | 0.013 | |
| protein import | GO:0017038 | 101 | 0.013 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.013 | |
| histone modification | GO:0016570 | 159 | 0.013 | |
| cilium assembly | GO:0042384 | 81 | 0.013 | |
| nuclear dna replication | GO:0033260 | 3 | 0.013 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.013 | |
| regulation of cilium assembly | GO:1902017 | 7 | 0.013 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.013 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.013 | |
| endocytosis | GO:0006897 | 168 | 0.013 | |
| intestinal epithelial structure maintenance | GO:0060729 | 4 | 0.012 | |
| gland development | GO:0048732 | 330 | 0.012 | |
| protein localization to membrane | GO:0072657 | 108 | 0.012 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.012 | |
| fat cell differentiation | GO:0045444 | 160 | 0.012 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.012 | |
| negative regulation of cell development | GO:0010721 | 169 | 0.012 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.012 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.012 | |
| chromatin organization | GO:0006325 | 206 | 0.012 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 139 | 0.012 | |
| digestive system development | GO:0055123 | 200 | 0.012 | |
| regulation of ion transport | GO:0043269 | 215 | 0.012 | |
| spermatid development | GO:0007286 | 108 | 0.012 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.012 | |
| regulation of t cell activation | GO:0050863 | 170 | 0.012 | |
| positive regulation of protein catabolic process | GO:0045732 | 60 | 0.012 | |
| cilium morphogenesis | GO:0060271 | 102 | 0.012 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 3 | 0.012 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.012 | |
| protein catabolic process | GO:0030163 | 221 | 0.012 | |
| male gamete generation | GO:0048232 | 285 | 0.012 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.012 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.011 | |
| placenta development | GO:0001890 | 140 | 0.011 | |
| protein refolding | GO:0042026 | 1 | 0.011 | |
| cardiac muscle tissue development | GO:0048738 | 130 | 0.011 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.011 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 243 | 0.011 | |
| transmembrane transport | GO:0055085 | 412 | 0.011 | |
| chromatin modification | GO:0016568 | 187 | 0.011 | |
| cation transport | GO:0006812 | 399 | 0.011 | |
| negative regulation of organelle organization | GO:0010639 | 90 | 0.011 | |
| negative regulation of t helper 2 cell differentiation | GO:0045629 | 4 | 0.011 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.011 | |
| lipid biosynthetic process | GO:0008610 | 179 | 0.011 | |
| anatomical structure homeostasis | GO:0060249 | 145 | 0.011 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.011 | |
| monocarboxylic acid metabolic process | GO:0032787 | 191 | 0.010 | |
| regulation of defense response | GO:0031347 | 233 | 0.010 | |
| t cell differentiation | GO:0030217 | 174 | 0.010 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.010 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.010 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.010 | |
| skeletal muscle organ development | GO:0060538 | 163 | 0.010 | |
| nuclear division | GO:0000280 | 158 | 0.010 | |
| signal transduction by p53 class mediator | GO:0072331 | 51 | 0.010 | |
| blastocyst development | GO:0001824 | 80 | 0.010 | |
| peroxisomal transport | GO:0043574 | 4 | 0.010 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.010 | |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.010 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.010 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.010 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.010 | |
| autophagy | GO:0006914 | 45 | 0.010 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.010 | |
| regulation of cytokine production | GO:0001817 | 266 | 0.010 | |
| sequestering of metal ion | GO:0051238 | 19 | 0.010 | |
| protein processing | GO:0016485 | 163 | 0.010 | |
