| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 2 | 0.776 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.607 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.540 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 2 | 0.532 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.459 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.413 | |
| protein refolding | GO:0042026 | 1 | 0.385 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.374 | |
| protein catabolic process | GO:0030163 | 221 | 0.369 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.336 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.313 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.311 | |
| proteasomal ubiquitin independent protein catabolic process | GO:0010499 | 1 | 0.284 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.260 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.250 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.213 | |
| spindle assembly involved in mitosis | GO:0090307 | 4 | 0.209 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.199 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.184 | |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.176 | |
| proteasome assembly | GO:0043248 | 1 | 0.155 | |
| positive regulation of peptidase activity | GO:0010952 | 49 | 0.149 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.147 | |
| cristae formation | GO:0042407 | 3 | 0.135 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.122 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.120 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.118 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 31 | 0.115 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.105 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.104 | |
| multicellular organismal aging | GO:0010259 | 24 | 0.103 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.101 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.085 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.085 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.083 | |
| atp metabolic process | GO:0046034 | 75 | 0.082 | |
| gonad development | GO:0008406 | 141 | 0.080 | |
| microtubule cytoskeleton organization involved in mitosis | GO:1902850 | 4 | 0.079 | |
| positive regulation of endopeptidase activity | GO:0010950 | 43 | 0.079 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.077 | |
| ossification | GO:0001503 | 216 | 0.077 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 4 | 0.075 | |
| sperm egg recognition | GO:0035036 | 37 | 0.075 | |
| protein deubiquitination | GO:0016579 | 19 | 0.072 | |
| protein processing | GO:0016485 | 163 | 0.071 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.068 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.065 | |
| organelle assembly | GO:0070925 | 177 | 0.064 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.062 | |
| regulation of phosphatidylcholine biosynthetic process | GO:2001245 | 2 | 0.062 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 80 | 0.062 | |
| dna metabolic process | GO:0006259 | 303 | 0.061 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 59 | 0.060 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.058 | |
| positive regulation of transcription initiation from rna polymerase ii promoter | GO:0060261 | 5 | 0.057 | |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 23 | 0.055 | |
| regulation of peptidase activity | GO:0052547 | 96 | 0.054 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.054 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.053 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 81 | 0.050 | |
| positive regulation of protein catabolic process | GO:0045732 | 60 | 0.048 | |
| male gamete generation | GO:0048232 | 285 | 0.048 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.047 | |
| organelle disassembly | GO:1903008 | 2 | 0.046 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.046 | |
| protein maturation | GO:0051604 | 176 | 0.046 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.045 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.045 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.044 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.042 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.039 | |
| regulation of cellular protein catabolic process | GO:1903362 | 61 | 0.039 | |
| protein modification by small protein removal | GO:0070646 | 21 | 0.039 | |
| mitotic nuclear division | GO:0007067 | 48 | 0.039 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 58 | 0.038 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.038 | |
| negative regulation of cell development | GO:0010721 | 169 | 0.037 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 85 | 0.036 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.035 | |
| fertilization | GO:0009566 | 127 | 0.035 | |
| rna interference | GO:0016246 | 2 | 0.035 | |
| protein import into nucleus | GO:0006606 | 95 | 0.034 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.034 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.034 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.034 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.034 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.033 | |
| transmembrane transport | GO:0055085 | 412 | 0.033 | |
| phosphatidylethanolamine metabolic process | GO:0046337 | 2 | 0.033 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.033 | |
| double strand break repair via homologous recombination | GO:0000724 | 21 | 0.032 | |
| positive regulation of dna templated transcription initiation | GO:2000144 | 5 | 0.032 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.031 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.030 | |
| regulation of cell morphogenesis involved in differentiation | GO:0010769 | 151 | 0.030 | |
| cell adhesion | GO:0007155 | 329 | 0.030 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.030 | |
| chromatin organization | GO:0006325 | 206 | 0.029 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.029 | |
| protein import | GO:0017038 | 101 | 0.029 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.029 | |
| regulation of endopeptidase activity | GO:0052548 | 89 | 0.029 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.029 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.028 | |
| response to inorganic substance | GO:0010035 | 96 | 0.028 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 57 | 0.028 | |
| toxin transport | GO:1901998 | 38 | 0.028 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.028 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.027 | |
| regulation of protein targeting | GO:1903533 | 61 | 0.027 | |
| stem cell differentiation | GO:0048863 | 268 | 0.027 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 10 | 0.027 | |
| negative regulation of alcohol biosynthetic process | GO:1902931 | 4 | 0.026 | |
| spermatogenesis | GO:0007283 | 284 | 0.026 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.025 | |
| positive regulation of cellular protein catabolic process | GO:1903364 | 34 | 0.024 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.024 | |
| genitalia development | GO:0048806 | 37 | 0.023 | |
| spindle organization | GO:0007051 | 28 | 0.023 | |
| negative regulation of pathway restricted smad protein phosphorylation | GO:0060394 | 1 | 0.023 | |
| prenylation | GO:0097354 | 3 | 0.023 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.023 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.023 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.022 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.022 | |
| atp catabolic process | GO:0006200 | 55 | 0.022 | |
| trna aminoacylation for protein translation | GO:0006418 | 1 | 0.021 | |
| trna aminoacylation | GO:0043039 | 1 | 0.021 | |
| blastocyst development | GO:0001824 | 80 | 0.020 | |
| retrograde transport vesicle recycling within golgi | GO:0000301 | 1 | 0.020 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.019 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 46 | 0.019 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.019 | |
| response to peptide | GO:1901652 | 136 | 0.019 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.018 | |
| negative regulation of phospholipid biosynthetic process | GO:0071072 | 1 | 0.018 | |
| positive regulation of protein complex assembly | GO:0031334 | 45 | 0.018 | |
| regulation of phospholipid biosynthetic process | GO:0071071 | 3 | 0.017 | |
| cellular response to inorganic substance | GO:0071241 | 37 | 0.017 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 57 | 0.017 | |
| single fertilization | GO:0007338 | 82 | 0.017 | |
| regulation of protein maturation | GO:1903317 | 96 | 0.017 | |
| protein secretion | GO:0009306 | 111 | 0.017 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.017 | |
| regulation of cysteine type endopeptidase activity involved in apoptotic process | GO:0043281 | 62 | 0.017 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.017 | |
| regulation of cell migration | GO:0030334 | 219 | 0.016 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.016 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.016 | |
| protein folding | GO:0006457 | 28 | 0.016 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.016 | |
| endocytosis | GO:0006897 | 168 | 0.015 | |
| mitotic spindle organization | GO:0007052 | 10 | 0.015 | |
| mitochondrion organization | GO:0007005 | 134 | 0.015 | |
| methylation | GO:0032259 | 134 | 0.015 | |
| nuclear transport | GO:0051169 | 139 | 0.015 | |
| determination of adult lifespan | GO:0008340 | 11 | 0.015 | |
| nuclear import | GO:0051170 | 95 | 0.015 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.015 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.014 | |
| negative regulation of cell morphogenesis involved in differentiation | GO:0010771 | 48 | 0.014 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.014 | |
| regulation of body fluid levels | GO:0050878 | 162 | 0.014 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.014 | |
| chromatin modification | GO:0016568 | 187 | 0.014 | |
| binding of sperm to zona pellucida | GO:0007339 | 34 | 0.014 | |
| dna templated transcription initiation | GO:0006352 | 13 | 0.014 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.013 | |
| protein localization to organelle | GO:0033365 | 185 | 0.013 | |
| regulation of epithelial to mesenchymal transition | GO:0010717 | 22 | 0.013 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.013 | |
| cellular response to organonitrogen compound | GO:0071417 | 145 | 0.013 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.013 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.013 | |
| reactive oxygen species biosynthetic process | GO:1903409 | 8 | 0.013 | |
| palate development | GO:0060021 | 76 | 0.013 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.012 | |
| translation | GO:0006412 | 93 | 0.012 | |
| posttranscriptional gene silencing | GO:0016441 | 10 | 0.012 | |
| regulation of dna templated transcription initiation | GO:2000142 | 7 | 0.012 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 8 | 0.012 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.012 | |
| response to light stimulus | GO:0009416 | 135 | 0.012 | |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.011 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.011 | |
| tissue regeneration | GO:0042246 | 22 | 0.011 | |
| ribosomal large subunit assembly | GO:0000027 | 2 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.011 | |
| protein localization to mitochondrion | GO:0070585 | 15 | 0.011 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 65 | 0.011 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.011 | |
| organelle fission | GO:0048285 | 170 | 0.011 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 6 | 0.011 | |
| regulation of anatomical structure size | GO:0090066 | 178 | 0.011 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.011 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.010 | |
| response to peptide hormone | GO:0043434 | 127 | 0.010 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.010 | |
| response to reactive oxygen species | GO:0000302 | 56 | 0.010 | |
| cardiocyte differentiation | GO:0035051 | 87 | 0.010 | |
| regulation of stem cell differentiation | GO:2000736 | 50 | 0.010 | |
| negative regulation of protein maturation | GO:1903318 | 79 | 0.010 | |
| negative regulation of protein phosphorylation | GO:0001933 | 126 | 0.010 | |
