| mrna splicing via spliceosome | GO:0000398 | 43 | 0.876 | Human Yeast Fly |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.765 | Human Yeast Fly |
| mrna processing | GO:0006397 | 63 | 0.712 | Human Yeast Fly |
| mrna metabolic process | GO:0016071 | 84 | 0.703 | Human Yeast Fly |
| rna processing | GO:0006396 | 105 | 0.689 | Human Yeast Fly |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.595 | Human Yeast Fly |
| regulation of rna splicing | GO:0043484 | 37 | 0.572 | Fly |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.462 | Fly |
| negative regulation of mrna processing | GO:0050686 | 12 | 0.421 | |
| rna splicing | GO:0008380 | 54 | 0.362 | Human Yeast Fly |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.362 | Human |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.314 | Fly |
| chromatin organization | GO:0006325 | 206 | 0.196 | Fly |
| regulation of mrna processing | GO:0050684 | 41 | 0.188 | Fly |
| regulation of mrna splicing via spliceosome | GO:0048024 | 32 | 0.186 | Fly |
| symbiosis encompassing mutualism through parasitism | GO:0044403 | 83 | 0.150 | Human |
| regulation of meiotic cell cycle | GO:0051445 | 34 | 0.137 | |
| dna dealkylation | GO:0035510 | 11 | 0.134 | |
| chromatin modification | GO:0016568 | 187 | 0.122 | Fly |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.102 | Human Yeast |
| pole plasm assembly | GO:0007315 | 2 | 0.100 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.099 | Human Yeast |
| negative regulation of rna splicing | GO:0033119 | 12 | 0.098 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.096 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.094 | |
| posttranscriptional gene silencing | GO:0016441 | 10 | 0.083 | |
| positive regulation of nucleocytoplasmic transport | GO:0046824 | 30 | 0.081 | |
| negative regulation of mrna metabolic process | GO:1903312 | 13 | 0.080 | |
| stem cell development | GO:0048864 | 219 | 0.080 | |
| gene silencing by mirna | GO:0035195 | 10 | 0.076 | |
| rna catabolic process | GO:0006401 | 29 | 0.074 | |
| dna metabolic process | GO:0006259 | 303 | 0.072 | Yeast |
| dna repair | GO:0006281 | 107 | 0.067 | Yeast |
| organelle fission | GO:0048285 | 170 | 0.065 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.064 | |
| primary mirna processing | GO:0031053 | 1 | 0.063 | |
| viral life cycle | GO:0019058 | 36 | 0.062 | Human |
| positive regulation of intracellular transport | GO:0032388 | 70 | 0.061 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.059 | Human Yeast |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.058 | Human Yeast |
| heterocycle catabolic process | GO:0046700 | 280 | 0.055 | Human Yeast |
| rna interference | GO:0016246 | 2 | 0.054 | |
| germ cell development | GO:0007281 | 185 | 0.053 | |
| gonad development | GO:0008406 | 141 | 0.053 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.053 | Human |
| histone deubiquitination | GO:0016578 | 2 | 0.052 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.051 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.051 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.049 | Human |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.046 | Human Yeast |
| positive regulation of rna splicing | GO:0033120 | 12 | 0.045 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.044 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.044 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.043 | |
| regulation of symbiosis encompassing mutualism through parasitism | GO:0043903 | 52 | 0.043 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.042 | Human Yeast |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.042 | |
| regulation of nuclear division | GO:0051783 | 56 | 0.042 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.042 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.042 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.041 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.041 | |
| intracellular protein transport | GO:0006886 | 204 | 0.040 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 73 | 0.040 | |
| organelle assembly | GO:0070925 | 177 | 0.040 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.039 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.039 | |
| embryonic organ morphogenesis | GO:0048562 | 276 | 0.039 | |
| axonal fasciculation | GO:0007413 | 15 | 0.039 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.038 | |
| nuclear division | GO:0000280 | 158 | 0.038 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.036 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.036 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.036 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.036 | Human Yeast |
| nuclear transcribed mrna catabolic process nonsense mediated decay | GO:0000184 | 1 | 0.035 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.035 | Human Yeast Fly |
| neuron projection guidance | GO:0097485 | 141 | 0.035 | |
| oxidation reduction process | GO:0055114 | 342 | 0.034 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.034 | |
| regulation of mrna stability | GO:0043488 | 23 | 0.034 | |
| positive regulation of mrna metabolic process | GO:1903313 | 17 | 0.034 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.033 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.033 | |
| regulation of protein transport | GO:0051223 | 163 | 0.032 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.032 | |
| negative regulation of mrna splicing via spliceosome | GO:0048025 | 12 | 0.032 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.031 | |
| intracellular receptor signaling pathway | GO:0030522 | 74 | 0.031 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.030 | Fly |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 8 | 0.030 | Fly |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.030 | |
| interspecies interaction between organisms | GO:0044419 | 83 | 0.030 | Human |
| negative regulation of protein serine threonine kinase activity | GO:0071901 | 49 | 0.029 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.028 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.028 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.028 | |
| amine metabolic process | GO:0009308 | 45 | 0.027 | |
| segmentation | GO:0035282 | 93 | 0.027 | |
| regulation of protein localization | GO:0032880 | 231 | 0.026 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.026 | Human Yeast |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.026 | |
| stem cell differentiation | GO:0048863 | 268 | 0.026 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 58 | 0.025 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.025 | Human Yeast |
| vitamin d receptor signaling pathway | GO:0070561 | 2 | 0.025 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.025 | |
| blood circulation | GO:0008015 | 195 | 0.025 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.025 | Fly |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.024 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.024 | Human Yeast |
| cellular amine metabolic process | GO:0044106 | 44 | 0.024 | |
| receptor mediated endocytosis | GO:0006898 | 51 | 0.024 | |
| antimicrobial peptide production | GO:0002775 | 2 | 0.024 | |
| defense response to bacterium | GO:0042742 | 119 | 0.024 | |
| trna wobble uridine modification | GO:0002098 | 2 | 0.024 | |
| chemotaxis | GO:0006935 | 247 | 0.023 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.023 | |
| spermatogenesis | GO:0007283 | 284 | 0.023 | |
| response to organic cyclic compound | GO:0014070 | 198 | 0.023 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 2 | 0.023 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.022 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.022 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.022 | Human Yeast |
| nucleotide catabolic process | GO:0009166 | 217 | 0.022 | Human Yeast |
| molting cycle | GO:0042303 | 90 | 0.021 | |
| regulation of response to dna damage stimulus | GO:2001020 | 34 | 0.021 | Human |
| changes to dna methylation involved in embryo development | GO:1901538 | 6 | 0.021 | |
| positive regulation of mrna processing | GO:0050685 | 16 | 0.021 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.021 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.021 | Human Yeast Fly |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.021 | Human Yeast |
| rna localization | GO:0006403 | 23 | 0.021 | Human Yeast Fly |
| metal ion homeostasis | GO:0055065 | 189 | 0.021 | |
| oogenesis | GO:0048477 | 56 | 0.021 | |
| mitotic cell cycle checkpoint | GO:0007093 | 31 | 0.020 | |
| cellular response to cytokine stimulus | GO:0071345 | 189 | 0.020 | |
| regulation of cell division | GO:0051302 | 76 | 0.020 | |
| negative regulation of phagocytosis | GO:0050765 | 4 | 0.020 | |
| regulation of generation of precursor metabolites and energy | GO:0043467 | 38 | 0.020 | |
| negative regulation of phosphorylation | GO:0042326 | 166 | 0.020 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.020 | Human Yeast Fly |
| posttranscriptional gene silencing by rna | GO:0035194 | 10 | 0.020 | |
| positive regulation of synaptic growth at neuromuscular junction | GO:0045887 | 1 | 0.019 | |
| oocyte construction | GO:0007308 | 2 | 0.019 | |
| protein targeting | GO:0006605 | 143 | 0.019 | |
| cation homeostasis | GO:0055080 | 212 | 0.019 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.019 | |
| regulation of multi organism process | GO:0043900 | 111 | 0.019 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.018 | |
| transmembrane transport | GO:0055085 | 412 | 0.018 | |
| cell division | GO:0051301 | 120 | 0.018 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.018 | |
| regulation of cell cycle phase transition | GO:1901987 | 77 | 0.018 | |
| viral process | GO:0016032 | 41 | 0.018 | Human |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.018 | |
| cellular protein complex disassembly | GO:0043624 | 36 | 0.018 | |
| regulation of neuron differentiation | GO:0045664 | 281 | 0.018 | |
| positive regulation of dna repair | GO:0045739 | 3 | 0.018 | |
| dna methylation involved in embryo development | GO:0043045 | 6 | 0.018 | |
| circadian rhythm | GO:0007623 | 114 | 0.018 | |
| regulation of chromatin modification | GO:1903308 | 57 | 0.017 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.017 | Human Yeast |
| regulation of protein targeting | GO:1903533 | 61 | 0.017 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.017 | |
| production of small rna involved in gene silencing by rna | GO:0070918 | 6 | 0.017 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.017 | |
| cation transport | GO:0006812 | 399 | 0.017 | |
| protein complex disassembly | GO:0043241 | 40 | 0.017 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.016 | Human Yeast |
| regulation of rna export from nucleus | GO:0046831 | 4 | 0.016 | |
| dendrite development | GO:0016358 | 115 | 0.016 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.016 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.016 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.016 | |
| mitochondrion organization | GO:0007005 | 134 | 0.016 | |
| negative regulation of kinase activity | GO:0033673 | 81 | 0.016 | |
| stem cell maintenance | GO:0019827 | 130 | 0.016 | |
| regulation of intrinsic apoptotic signaling pathway | GO:2001242 | 61 | 0.016 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.016 | |
| locomotory behavior | GO:0007626 | 195 | 0.016 | |
| cognition | GO:0050890 | 149 | 0.015 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 16 | 0.015 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 126 | 0.015 | |
| generation of precursor metabolites and energy | GO:0006091 | 103 | 0.015 | |
| apoptotic nuclear changes | GO:0030262 | 9 | 0.015 | |
| regulation of nucleotide metabolic process | GO:0006140 | 169 | 0.015 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.015 | |
| methylation | GO:0032259 | 134 | 0.015 | |
| atp metabolic process | GO:0046034 | 75 | 0.015 | Human Yeast |
| developmental growth involved in morphogenesis | GO:0060560 | 138 | 0.015 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.015 | Human Yeast |
| adult behavior | GO:0030534 | 135 | 0.015 | |
| negative regulation of viral process | GO:0048525 | 23 | 0.015 | |
| positive regulation of apoptotic signaling pathway | GO:2001235 | 95 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.015 | |
| innate immune response | GO:0045087 | 157 | 0.015 | |
| protein import into nucleus | GO:0006606 | 95 | 0.015 | |
| maintenance of location | GO:0051235 | 89 | 0.015 | |
| divalent inorganic cation homeostasis | GO:0072507 | 138 | 0.015 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.015 | |
| angiogenesis | GO:0001525 | 201 | 0.014 | |
| epithelial tube morphogenesis | GO:0060562 | 303 | 0.014 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.014 | |
| regulation of viral release from host cell | GO:1902186 | 6 | 0.014 | |
| cellular response to lipid | GO:0071396 | 145 | 0.014 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.014 | |
| positive regulation of growth | GO:0045927 | 104 | 0.014 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.014 | Human Yeast |
| histone h4 acetylation | GO:0043967 | 10 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.014 | Human Yeast |
| regulation of histone modification | GO:0031056 | 56 | 0.014 | |
| axon guidance | GO:0007411 | 141 | 0.014 | |
| gland development | GO:0048732 | 330 | 0.014 | |
| blastoderm segmentation | GO:0007350 | 13 | 0.014 | |
| calcium ion homeostasis | GO:0055074 | 127 | 0.014 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 75 | 0.014 | |
| base excision repair | GO:0006284 | 9 | 0.014 | |
| regulation of protein import into nucleus | GO:0042306 | 52 | 0.014 | |
| regulation of neuron death | GO:1901214 | 134 | 0.014 | |
| axonogenesis | GO:0007409 | 274 | 0.014 | |
| positive regulation of mrna splicing via spliceosome | GO:0048026 | 11 | 0.014 | |
| protein ubiquitination | GO:0016567 | 171 | 0.014 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.013 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.013 | |
| response to lipopolysaccharide | GO:0032496 | 128 | 0.013 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.013 | |
| connective tissue development | GO:0061448 | 179 | 0.013 | |
| demethylation | GO:0070988 | 23 | 0.013 | |
| negative regulation of cellular amine metabolic process | GO:0033239 | 1 | 0.013 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.013 | |
| protein processing | GO:0016485 | 163 | 0.013 | |
| positive regulation of protein transport | GO:0051222 | 93 | 0.013 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.013 | |
| 3 utr mediated mrna stabilization | GO:0070935 | 2 | 0.013 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.013 | |
| rhythmic process | GO:0048511 | 174 | 0.013 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.013 | |
| nuclear transport | GO:0051169 | 139 | 0.013 | Human Yeast Fly |
| mrna transport | GO:0051028 | 13 | 0.013 | Human Yeast Fly |
| regulation of response to alcohol | GO:1901419 | 2 | 0.012 | |
| regulation of protein serine threonine kinase activity | GO:0071900 | 157 | 0.012 | |
| embryonic axis specification | GO:0000578 | 30 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.012 | Human Yeast |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.012 | Human Yeast |
| neuroblast differentiation | GO:0014016 | 2 | 0.012 | |
| regulation of cell projection organization | GO:0031344 | 206 | 0.012 | |
| regulation of protein complex assembly | GO:0043254 | 83 | 0.012 | |
| adult locomotory behavior | GO:0008344 | 91 | 0.012 | |
| dna templated transcription initiation | GO:0006352 | 13 | 0.012 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.012 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 48 | 0.012 | |
| positive regulation of myeloid cell differentiation | GO:0045639 | 43 | 0.012 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.012 | Human Yeast |
| endocytosis | GO:0006897 | 168 | 0.012 | |
| histone modification | GO:0016570 | 159 | 0.012 | |
| nuclear export | GO:0051168 | 34 | 0.012 | Human Yeast Fly |
| regulation of protein complex disassembly | GO:0043244 | 28 | 0.012 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.012 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.012 | |
| ncrna processing | GO:0034470 | 26 | 0.012 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 114 | 0.012 | |
| lymphocyte proliferation | GO:0046651 | 164 | 0.012 | |
| embryonic skeletal system morphogenesis | GO:0048704 | 91 | 0.012 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.012 | Human Yeast |
| defense response to other organism | GO:0098542 | 197 | 0.012 | |
| stem cell fate specification | GO:0048866 | 3 | 0.012 | |
| mrna catabolic process | GO:0006402 | 22 | 0.011 | |
| positive regulation of intracellular protein transport | GO:0090316 | 42 | 0.011 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.011 | |
| carboxylic acid biosynthetic process | GO:0046394 | 86 | 0.011 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.011 | Human Yeast |
| nucleobase containing compound transport | GO:0015931 | 27 | 0.011 | Human Yeast Fly |
| viral gene expression | GO:0019080 | 3 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.011 | Human Yeast |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.011 | Human Yeast |
| trna wobble base modification | GO:0002097 | 2 | 0.011 | |
| regulation of mitochondrion organization | GO:0010821 | 27 | 0.011 | |
| regulation of nucleotide catabolic process | GO:0030811 | 122 | 0.011 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.011 | Human Yeast |
| protein acylation | GO:0043543 | 64 | 0.011 | |
| response to oxidative stress | GO:0006979 | 123 | 0.011 | |
| regulation of rna stability | GO:0043487 | 26 | 0.011 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.011 | Human Yeast |
| blastocyst hatching | GO:0001835 | 4 | 0.011 | |
| cellular homeostasis | GO:0019725 | 240 | 0.011 | |
| mesenchymal cell development | GO:0014031 | 93 | 0.010 | |
| dna demethylation | GO:0080111 | 10 | 0.010 | |
| macromolecular complex disassembly | GO:0032984 | 43 | 0.010 | |
| gene silencing by rna | GO:0031047 | 19 | 0.010 | |
| response to acid chemical | GO:0001101 | 111 | 0.010 | |
| pharynx development | GO:0060465 | 1 | 0.010 | |
| cell recognition | GO:0008037 | 83 | 0.010 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.010 | |
| negative regulation of transferase activity | GO:0051348 | 85 | 0.010 | |