| rna splicing | GO:0008380 | 54 | 0.478 | Fly |
| mrna metabolic process | GO:0016071 | 84 | 0.398 | Fly |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.391 | Fly |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.351 | Fly |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.294 | Fly |
| mrna processing | GO:0006397 | 63 | 0.284 | Fly |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.281 | Fly |
| regulation of mrna processing | GO:0050684 | 41 | 0.228 | Fly |
| regulation of rna splicing | GO:0043484 | 37 | 0.226 | Fly |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.166 | Fly |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.083 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.064 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.057 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.053 | |
| rna processing | GO:0006396 | 105 | 0.053 | Fly |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 8 | 0.049 | Fly |
| cell division | GO:0051301 | 120 | 0.047 | |
| regulation of cell division | GO:0051302 | 76 | 0.043 | |
| organelle fission | GO:0048285 | 170 | 0.042 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.040 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.034 | |
| stem cell development | GO:0048864 | 219 | 0.033 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.032 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.030 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.029 | |
| nucleic acid transport | GO:0050657 | 18 | 0.029 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.028 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 32 | 0.028 | Fly |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.028 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.027 | Worm |
| translation | GO:0006412 | 93 | 0.027 | |
| amine metabolic process | GO:0009308 | 45 | 0.026 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.026 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.026 | |
| negative regulation of rna splicing | GO:0033119 | 12 | 0.026 | |
| chromatin organization | GO:0006325 | 206 | 0.026 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.025 | |
| mapk cascade | GO:0000165 | 281 | 0.025 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.024 | |
| microtubule based process | GO:0007017 | 236 | 0.023 | |
| regulation of mrna export from nucleus | GO:0010793 | 3 | 0.022 | |
| negative regulation of mrna processing | GO:0050686 | 12 | 0.022 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.021 | |
| chromatin modification | GO:0016568 | 187 | 0.021 | |
| regulation of mrna stability | GO:0043488 | 23 | 0.021 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.021 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.021 | |
| regulation of nuclear division | GO:0051783 | 56 | 0.020 | |
| mrna transport | GO:0051028 | 13 | 0.020 | |
| hormone metabolic process | GO:0042445 | 86 | 0.020 | |
| establishment of rna localization | GO:0051236 | 18 | 0.020 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.019 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.019 | |
| sensory perception | GO:0007600 | 245 | 0.019 | |
| regulation of translation | GO:0006417 | 71 | 0.019 | |
| nuclear division | GO:0000280 | 158 | 0.018 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.018 | |
| nuclear transport | GO:0051169 | 139 | 0.018 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.017 | |
| actin filament organization | GO:0007015 | 113 | 0.017 | |
| regulation of response to wounding | GO:1903034 | 189 | 0.017 | |
| organic hydroxy compound metabolic process | GO:1901615 | 203 | 0.016 | |
| cellular response to lipid | GO:0071396 | 145 | 0.016 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 75 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.016 | |
| rna localization | GO:0006403 | 23 | 0.016 | |
| ventricular septum development | GO:0003281 | 42 | 0.015 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.015 | |
| translesion synthesis | GO:0019985 | 1 | 0.015 | |
| rna interference | GO:0016246 | 2 | 0.015 | Worm |
| regulation of transcription from rna polymerase iii promoter | GO:0006359 | 2 | 0.015 | |
| fat cell differentiation | GO:0045444 | 160 | 0.015 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.014 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.014 | |
| endocytosis | GO:0006897 | 168 | 0.014 | Worm |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.014 | |
| ossification | GO:0001503 | 216 | 0.014 | |
| rna transport | GO:0050658 | 18 | 0.013 | |
| carbohydrate biosynthetic process | GO:0016051 | 74 | 0.013 | |
| cellular homeostasis | GO:0019725 | 240 | 0.013 | |
| intrinsic apoptotic signaling pathway | GO:0097193 | 132 | 0.013 | |
| uterus morphogenesis | GO:0061038 | 2 | 0.013 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.013 | |
| positive regulation of mapk cascade | GO:0043410 | 170 | 0.013 | |
| chromosome organization involved in meiosis | GO:0070192 | 39 | 0.013 | |
| oogenesis | GO:0048477 | 56 | 0.012 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.012 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.012 | |
| muscle contraction | GO:0006936 | 101 | 0.012 | |
| germ cell development | GO:0007281 | 185 | 0.012 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.012 | |
| receptor mediated endocytosis | GO:0006898 | 51 | 0.012 | Worm |
| female gamete generation | GO:0007292 | 74 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.012 | |
| anatomical structure homeostasis | GO:0060249 | 145 | 0.012 | |
| cellular response to insulin stimulus | GO:0032869 | 78 | 0.012 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.012 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.012 | |
| mitotic chromosome condensation | GO:0007076 | 1 | 0.012 | |
| epithelial cell development | GO:0002064 | 159 | 0.012 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.012 | |
| protein targeting | GO:0006605 | 143 | 0.011 | |
| immune effector process | GO:0002252 | 321 | 0.011 | |
| regulation of meiotic cell cycle | GO:0051445 | 34 | 0.011 | |
| negative regulation of mrna splicing via spliceosome | GO:0048025 | 12 | 0.011 | |
| stem cell maintenance | GO:0019827 | 130 | 0.011 | |
| multinuclear osteoclast differentiation | GO:0072674 | 4 | 0.011 | |
| gall bladder development | GO:0061010 | 2 | 0.011 | |
| regulation of homeostatic process | GO:0032844 | 182 | 0.011 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.011 | |
| mitotic nuclear division | GO:0007067 | 48 | 0.011 | |
| rna catabolic process | GO:0006401 | 29 | 0.011 | |
| organelle assembly | GO:0070925 | 177 | 0.011 | |
| histone h3 k36 methylation | GO:0010452 | 6 | 0.011 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.010 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.010 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.010 | |
| ear development | GO:0043583 | 200 | 0.010 | |
