| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.648 | Yeast |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.401 | Yeast |
| mrna metabolic process | GO:0016071 | 84 | 0.387 | Yeast |
| nucleic acid transport | GO:0050657 | 18 | 0.223 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.158 | |
| rna processing | GO:0006396 | 105 | 0.134 | Yeast |
| rna splicing | GO:0008380 | 54 | 0.123 | Yeast |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.095 | |
| mrna processing | GO:0006397 | 63 | 0.088 | Yeast |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.072 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.059 | |
| oocyte construction | GO:0007308 | 2 | 0.057 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.055 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.055 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.052 | |
| endocytosis | GO:0006897 | 168 | 0.045 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.045 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.042 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.041 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.039 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.039 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.036 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.035 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.035 | |
| cell division | GO:0051301 | 120 | 0.034 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.034 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.034 | |
| ossification | GO:0001503 | 216 | 0.032 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.032 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.032 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.031 | |
| mapk cascade | GO:0000165 | 281 | 0.030 | |
| mrna splicing via spliceosome | GO:0000398 | 43 | 0.030 | Yeast |
| regulation of mrna splicing via spliceosome | GO:0048024 | 32 | 0.029 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.029 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.028 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 122 | 0.028 | |
| establishment of rna localization | GO:0051236 | 18 | 0.028 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.028 | |
| gonad development | GO:0008406 | 141 | 0.027 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.027 | Fly |
| nucleoside metabolic process | GO:0009116 | 246 | 0.026 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.025 | |
| regulation of nucleoside metabolic process | GO:0009118 | 130 | 0.025 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.024 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.023 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.023 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 57 | 0.022 | |
| regulation of mrna processing | GO:0050684 | 41 | 0.022 | |
| negative regulation of cell proliferation | GO:0008285 | 296 | 0.022 | |
| protein ubiquitination | GO:0016567 | 171 | 0.021 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.021 | |
| regulation of nucleotide catabolic process | GO:0030811 | 122 | 0.021 | |
| translational initiation | GO:0006413 | 24 | 0.021 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 79 | 0.020 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.020 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.020 | |
| nucleotide biosynthetic process | GO:0009165 | 78 | 0.020 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.020 | |
| respiratory system development | GO:0060541 | 190 | 0.019 | |
| lung development | GO:0030324 | 164 | 0.019 | |
| developmental maturation | GO:0021700 | 193 | 0.019 | |
| regionalization | GO:0003002 | 337 | 0.019 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.019 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.019 | |
| heart contraction | GO:0060047 | 93 | 0.019 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.018 | |
| protein methylation | GO:0006479 | 81 | 0.018 | |
| regulation of protein localization | GO:0032880 | 231 | 0.018 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.018 | |
| amine metabolic process | GO:0009308 | 45 | 0.018 | |
| organophosphate biosynthetic process | GO:0090407 | 122 | 0.017 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.017 | |
| microtubule based process | GO:0007017 | 236 | 0.017 | |
| organelle localization | GO:0051640 | 179 | 0.017 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.017 | |
| leukocyte proliferation | GO:0070661 | 172 | 0.016 | |
| oogenesis | GO:0048477 | 56 | 0.016 | |
| regulation of rna splicing | GO:0043484 | 37 | 0.016 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.016 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.016 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.016 | |
| oocyte axis specification | GO:0007309 | 2 | 0.016 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.015 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.015 | |
| response to acid chemical | GO:0001101 | 111 | 0.015 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.015 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.015 | |
| leukocyte migration | GO:0050900 | 124 | 0.015 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.015 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.015 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.015 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.015 | |
| cellular homeostasis | GO:0019725 | 240 | 0.015 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.015 | |
| regulation of cell division | GO:0051302 | 76 | 0.014 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.014 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.014 | |
| dna recombination | GO:0006310 | 92 | 0.014 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.013 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.013 | |
| female gamete generation | GO:0007292 | 74 | 0.013 | |
| positive regulation of protein modification by small protein conjugation or removal | GO:1903322 | 30 | 0.013 | |
| segmentation | GO:0035282 | 93 | 0.013 | |
| establishment or maintenance of cytoskeleton polarity | GO:0030952 | 2 | 0.013 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 12 | 0.013 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.012 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.012 | |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.012 | |
| germ cell development | GO:0007281 | 185 | 0.012 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.012 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.012 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.012 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.012 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.012 | |
| membrane organization | GO:0061024 | 245 | 0.012 | |
| purine containing compound biosynthetic process | GO:0072522 | 70 | 0.012 | |
| protein catabolic process | GO:0030163 | 221 | 0.011 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.011 | |
| respiratory tube development | GO:0030323 | 167 | 0.011 | |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.011 | |
| stem cell differentiation | GO:0048863 | 268 | 0.011 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.011 | |
| oocyte development | GO:0048599 | 33 | 0.011 | |
| signal transduction by p53 class mediator | GO:0072331 | 51 | 0.011 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.011 | |
| cation transport | GO:0006812 | 399 | 0.011 | |
| protein alkylation | GO:0008213 | 81 | 0.011 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.011 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.011 | |
| dna repair | GO:0006281 | 107 | 0.011 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.010 | |
| blood circulation | GO:0008015 | 195 | 0.010 | |
| regulation of erk1 and erk2 cascade | GO:0070372 | 71 | 0.010 | |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.010 | |
| ribose phosphate biosynthetic process | GO:0046390 | 59 | 0.010 | |
| lipid localization | GO:0010876 | 126 | 0.010 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.010 | |
| dna damage response signal transduction by p53 class mediator | GO:0030330 | 19 | 0.010 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.010 | |
