| protein modification by small protein removal | GO:0070646 | 21 | 0.672 | |
| translation | GO:0006412 | 93 | 0.524 | |
| ribonucleoprotein complex localization | GO:0071166 | 1 | 0.415 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.221 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.203 | |
| rna processing | GO:0006396 | 105 | 0.183 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.147 | |
| oocyte axis specification | GO:0007309 | 2 | 0.146 | |
| compound eye development | GO:0048749 | 1 | 0.140 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.136 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.134 | |
| nuclear transport | GO:0051169 | 139 | 0.127 | |
| protein import into nucleus | GO:0006606 | 95 | 0.125 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.124 | |
| maturation of ssu rrna | GO:0030490 | 1 | 0.114 | |
| transcription from rna polymerase i promoter | GO:0006360 | 13 | 0.103 | |
| ossification | GO:0001503 | 216 | 0.102 | |
| regulation of translation | GO:0006417 | 71 | 0.098 | |
| ribosomal small subunit biogenesis | GO:0042274 | 4 | 0.095 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.093 | Human |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.092 | |
| cellular response to interferon gamma | GO:0071346 | 25 | 0.085 | |
| rna interference | GO:0016246 | 2 | 0.085 | |
| positive regulation of intracellular transport | GO:0032388 | 70 | 0.079 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.077 | |
| ribosome biogenesis | GO:0042254 | 20 | 0.075 | |
| nucleus organization | GO:0006997 | 45 | 0.072 | |
| protein import | GO:0017038 | 101 | 0.071 | |
| nuclear export | GO:0051168 | 34 | 0.061 | |
| single organism nuclear import | GO:1902593 | 95 | 0.060 | |
| dendrite development | GO:0016358 | 115 | 0.060 | |
| termination of rna polymerase i transcription | GO:0006363 | 2 | 0.059 | |
| nuclear import | GO:0051170 | 95 | 0.058 | |
| cajal body organization | GO:0030576 | 1 | 0.057 | |
| rna splicing | GO:0008380 | 54 | 0.056 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.056 | |
| organelle disassembly | GO:1903008 | 2 | 0.054 | |
| protein desumoylation | GO:0016926 | 2 | 0.054 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.053 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.052 | |
| protein localization to organelle | GO:0033365 | 185 | 0.052 | |
| protein targeting | GO:0006605 | 143 | 0.052 | |
| germ cell development | GO:0007281 | 185 | 0.051 | |
| regulation of chromatin binding | GO:0035561 | 7 | 0.051 | |
| intracellular protein transport | GO:0006886 | 204 | 0.049 | |
| female gamete generation | GO:0007292 | 74 | 0.049 | |
| germ cell proliferation | GO:0036093 | 7 | 0.049 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.047 | |
| chromatin organization | GO:0006325 | 206 | 0.046 | |
| ribonucleoprotein complex disassembly | GO:0032988 | 3 | 0.046 | |
| translational initiation | GO:0006413 | 24 | 0.046 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.044 | |
| cell growth | GO:0016049 | 130 | 0.043 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.041 | |
| positive regulation of nucleocytoplasmic transport | GO:0046824 | 30 | 0.040 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.040 | |
| oogenesis | GO:0048477 | 56 | 0.040 | |
| lateral inhibition | GO:0046331 | 1 | 0.039 | |
| microtubule based process | GO:0007017 | 236 | 0.038 | |
| regulation of protein localization | GO:0032880 | 231 | 0.037 | |
| regulation of defense response | GO:0031347 | 233 | 0.037 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.036 | |
| kinetochore organization | GO:0051383 | 2 | 0.034 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.033 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.032 | |
| rrna containing ribonucleoprotein complex export from nucleus | GO:0071428 | 1 | 0.031 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.030 | |
| positive regulation of protein import into nucleus | GO:0042307 | 26 | 0.030 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.030 | |
| response to osmotic stress | GO:0006970 | 21 | 0.029 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.029 | |
| positive regulation of transcription from rna polymerase i promoter | GO:0045943 | 3 | 0.029 | |
| rna transport | GO:0050658 | 18 | 0.029 | |
| ribosome localization | GO:0033750 | 1 | 0.028 | |
| ncrna processing | GO:0034470 | 26 | 0.027 | |
| regulation of cell cycle phase transition | GO:1901987 | 77 | 0.027 | |
| regulation of meiotic cell cycle | GO:0051445 | 34 | 0.027 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.027 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.026 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.026 | |
| maturation of ssu rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000462 | 1 | 0.026 | |
| rrna processing | GO:0006364 | 10 | 0.025 | |
| dna replication | GO:0006260 | 52 | 0.025 | |
| regulation of cell cycle g1 s phase transition | GO:1902806 | 35 | 0.025 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.025 | |
| dna metabolic process | GO:0006259 | 303 | 0.024 | |
| regulation of transcription from rna polymerase i promoter | GO:0006356 | 6 | 0.024 | |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.023 | |
| gene silencing by rna | GO:0031047 | 19 | 0.023 | |
| mrna transport | GO:0051028 | 13 | 0.023 | |
| nuclear division | GO:0000280 | 158 | 0.022 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.022 | |
| regulation of cell division | GO:0051302 | 76 | 0.022 | |
| cellular response to sterol | GO:0036315 | 2 | 0.021 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.021 | |
| organelle fission | GO:0048285 | 170 | 0.021 | |
| regulation of protein localization to nucleus | GO:1900180 | 60 | 0.021 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.020 | |
| nls bearing protein import into nucleus | GO:0006607 | 2 | 0.020 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.020 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.020 | |
| regulation of peptidase activity | GO:0052547 | 96 | 0.020 | |
| regulation of protein complex assembly | GO:0043254 | 83 | 0.020 | |
| positive regulation of protein transport | GO:0051222 | 93 | 0.020 | |
| cell division | GO:0051301 | 120 | 0.019 | |
| ribosomal subunit export from nucleus | GO:0000054 | 1 | 0.019 | |
| organelle assembly | GO:0070925 | 177 | 0.019 | |
| positive regulation of growth | GO:0045927 | 104 | 0.019 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.018 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.018 | |
| macromolecular complex disassembly | GO:0032984 | 43 | 0.018 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 57 | 0.018 | |
| oocyte construction | GO:0007308 | 2 | 0.018 | |
| developmental maturation | GO:0021700 | 193 | 0.018 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.018 | |
| protein deubiquitination | GO:0016579 | 19 | 0.018 | |
| regulation of response to wounding | GO:1903034 | 189 | 0.018 | |
| stem cell development | GO:0048864 | 219 | 0.017 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.017 | |
| pore complex assembly | GO:0046931 | 3 | 0.017 | |
| maintenance of location | GO:0051235 | 89 | 0.017 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.017 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.017 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.016 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.016 | |
| regulation of mitotic cell cycle | GO:0007346 | 126 | 0.016 | |
| regulation of nucleocytoplasmic transport | GO:0046822 | 73 | 0.016 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.016 | |
| gonad development | GO:0008406 | 141 | 0.016 | |
| positive regulation of protein localization to nucleus | GO:1900182 | 30 | 0.016 | |
| negative regulation of binding | GO:0051100 | 39 | 0.015 | |
| response to interferon gamma | GO:0034341 | 34 | 0.015 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.015 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.015 | |
| protein processing | GO:0016485 | 163 | 0.015 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 40 | 0.015 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.015 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.015 | |
| endonucleolytic cleavage involved in rrna processing | GO:0000478 | 1 | 0.015 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.014 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.014 | |
| cellular response to cytokine stimulus | GO:0071345 | 189 | 0.014 | |
| rna localization | GO:0006403 | 23 | 0.014 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.014 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.014 | |
| maturation of 5 8s rrna from tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000466 | 1 | 0.013 | |
| positive regulation of intracellular protein transport | GO:0090316 | 42 | 0.013 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.013 | |
| endonucleolytic cleavage of tricistronic rrna transcript ssu rrna 5 8s rrna lsu rrna | GO:0000479 | 1 | 0.013 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.013 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.013 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.013 | |
| regulation of protein transport | GO:0051223 | 163 | 0.013 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.013 | |
| cytoplasmic translational initiation | GO:0002183 | 3 | 0.013 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.013 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.013 | |
| mapk cascade | GO:0000165 | 281 | 0.013 | |
| regulation of protein maturation | GO:1903317 | 96 | 0.012 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.012 | |
| regulation of cellular component size | GO:0032535 | 121 | 0.012 | |
| mrna localization resulting in posttranscriptional regulation of gene expression | GO:0010609 | 2 | 0.012 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.012 | |
| positive regulation of cell cycle process | GO:0090068 | 61 | 0.012 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.012 | |
| ribosome assembly | GO:0042255 | 5 | 0.012 | |
| adult behavior | GO:0030534 | 135 | 0.012 | |
| protein ubiquitination | GO:0016567 | 171 | 0.012 | |
| multicellular organismal protein catabolic process | GO:0044254 | 1 | 0.012 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.012 | |
| microtubule organizing center organization | GO:0031023 | 28 | 0.012 | |
| regulation of binding | GO:0051098 | 111 | 0.011 | |
| establishment or maintenance of polarity of embryonic epithelium | GO:0016332 | 1 | 0.011 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.011 | |
| chromatin modification | GO:0016568 | 187 | 0.011 | |
| regulation of protein import into nucleus | GO:0042306 | 52 | 0.011 | |
| gastrulation | GO:0007369 | 116 | 0.011 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.011 | |
| oocyte development | GO:0048599 | 33 | 0.011 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.010 | |
| histone modification | GO:0016570 | 159 | 0.010 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.010 | |
| negative regulation of protein processing | GO:0010955 | 79 | 0.010 | |
| positive regulation of angiogenesis | GO:0045766 | 46 | 0.010 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.010 | |
| regulation of transcription by chromatin organization | GO:0034401 | 0 | 0.010 | |
