| dna metabolic process | GO:0006259 | 303 | 0.417 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.250 | |
| amine metabolic process | GO:0009308 | 45 | 0.138 | |
| chromatin organization | GO:0006325 | 206 | 0.127 | |
| protein acylation | GO:0043543 | 64 | 0.120 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.116 | |
| internal protein amino acid acetylation | GO:0006475 | 42 | 0.116 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.115 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.113 | |
| regionalization | GO:0003002 | 337 | 0.111 | |
| histone modification | GO:0016570 | 159 | 0.110 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.106 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.094 | |
| compound eye development | GO:0048749 | 1 | 0.091 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.089 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.081 | |
| digestive system development | GO:0055123 | 200 | 0.080 | |
| cellular response to starvation | GO:0009267 | 57 | 0.079 | |
| i kappab kinase nf kappab signaling | GO:0007249 | 85 | 0.072 | |
| organelle assembly | GO:0070925 | 177 | 0.069 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.068 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.067 | |
| leukocyte differentiation | GO:0002521 | 342 | 0.065 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.065 | |
| olfactory learning | GO:0008355 | 2 | 0.064 | |
| regulation of histone modification | GO:0031056 | 56 | 0.064 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.062 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.056 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.053 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.051 | |
| nuclear division | GO:0000280 | 158 | 0.050 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.049 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.048 | |
| segmentation | GO:0035282 | 93 | 0.047 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.047 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.047 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.046 | |
| chemotaxis | GO:0006935 | 247 | 0.044 | |
| chromatin modification | GO:0016568 | 187 | 0.043 | |
| internal peptidyl lysine acetylation | GO:0018393 | 42 | 0.043 | |
| regulation of synapse assembly | GO:0051963 | 29 | 0.042 | |
| t cell differentiation | GO:0030217 | 174 | 0.042 | |
| muscle tissue development | GO:0060537 | 308 | 0.041 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.040 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.040 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.038 | |
| oocyte axis specification | GO:0007309 | 2 | 0.038 | |
| stem cell fate specification | GO:0048866 | 3 | 0.038 | |
| positive regulation of organelle organization | GO:0010638 | 128 | 0.037 | |
| positive regulation of gene silencing by mirna | GO:2000637 | 1 | 0.037 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.037 | |
| microtubule based process | GO:0007017 | 236 | 0.037 | |
| neuron projection guidance | GO:0097485 | 141 | 0.036 | |
| transmembrane receptor protein tyrosine kinase signaling pathway | GO:0007169 | 247 | 0.035 | |
| regulation of chromosome organization | GO:0033044 | 83 | 0.035 | |
| negative regulation of cellular amine metabolic process | GO:0033239 | 1 | 0.035 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.034 | |
| gene silencing by mirna | GO:0035195 | 10 | 0.033 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.033 | |
| spermatogenesis | GO:0007283 | 284 | 0.032 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.032 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.032 | |
| cellular response to external stimulus | GO:0071496 | 88 | 0.032 | |
| male gamete generation | GO:0048232 | 285 | 0.032 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.032 | |
| negative regulation of cell cycle | GO:0045786 | 123 | 0.031 | |
| somitogenesis | GO:0001756 | 69 | 0.030 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.030 | |
| pole plasm assembly | GO:0007315 | 2 | 0.030 | |
| multicellular organism growth | GO:0035264 | 161 | 0.030 | |
| oocyte construction | GO:0007308 | 2 | 0.029 | |
| lipid localization | GO:0010876 | 126 | 0.029 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.028 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.028 | |
| axonogenesis | GO:0007409 | 274 | 0.028 | |
| mapk cascade | GO:0000165 | 281 | 0.028 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.028 | |
| negative regulation of synapse assembly | GO:0051964 | 3 | 0.027 | |
| negative regulation of cellular amino acid metabolic process | GO:0045763 | 0 | 0.027 | |
| negative regulation of mesenchymal cell proliferation | GO:0072201 | 3 | 0.027 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.026 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.026 | |
| leukocyte mediated immunity | GO:0002443 | 174 | 0.026 | |
| embryonic organ morphogenesis | GO:0048562 | 276 | 0.026 | |
| immune effector process | GO:0002252 | 321 | 0.026 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 9 | 0.025 | |
| posttranscriptional gene silencing | GO:0016441 | 10 | 0.025 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.025 | |
| digestive tract development | GO:0048565 | 190 | 0.025 | |
| lung development | GO:0030324 | 164 | 0.024 | |
| t cell activation | GO:0042110 | 289 | 0.024 | |
| maintenance of location | GO:0051235 | 89 | 0.024 | |
| positive regulation of growth | GO:0045927 | 104 | 0.024 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.024 | |
| cell cycle checkpoint | GO:0000075 | 47 | 0.024 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.024 | |
| regulation of sequence specific dna binding transcription factor activity | GO:0051090 | 106 | 0.024 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.023 | |
| regulation of defense response | GO:0031347 | 233 | 0.023 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.023 | |
| regulation of chromatin silencing | GO:0031935 | 2 | 0.023 | |
| learning or memory | GO:0007611 | 148 | 0.023 | |
| gene silencing | GO:0016458 | 38 | 0.022 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.022 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.022 | |
| histone h4 acetylation | GO:0043967 | 10 | 0.022 | |
| n terminal protein amino acid modification | GO:0031365 | 6 | 0.022 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.022 | |
| endoderm formation | GO:0001706 | 20 | 0.022 | |
| b cell activation | GO:0042113 | 161 | 0.021 | |
| placenta development | GO:0001890 | 140 | 0.021 | |
| stem cell differentiation | GO:0048863 | 268 | 0.021 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.021 | |
| histone h3 acetylation | GO:0043966 | 14 | 0.021 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.021 | |
| regulation of secretion | GO:0051046 | 274 | 0.021 | |
| respiratory tube development | GO:0030323 | 167 | 0.021 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.021 | |
| somite development | GO:0061053 | 81 | 0.021 | |
| mrna processing | GO:0006397 | 63 | 0.020 | Rat |
| pharynx development | GO:0060465 | 1 | 0.020 | |
| synapse assembly | GO:0007416 | 56 | 0.020 | |
| epithelial cell development | GO:0002064 | 159 | 0.020 | |
| neuronal action potential | GO:0019228 | 54 | 0.020 | |
| peptidyl serine modification | GO:0018209 | 83 | 0.020 | |
| lipid biosynthetic process | GO:0008610 | 179 | 0.020 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.020 | |
| peptidyl lysine acetylation | GO:0018394 | 45 | 0.020 | |
| regulation of protein stability | GO:0031647 | 52 | 0.020 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.020 | |
| protein polymerization | GO:0051258 | 57 | 0.020 | |
| gastrulation | GO:0007369 | 116 | 0.019 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.019 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.019 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.019 | |
| protein catabolic process | GO:0030163 | 221 | 0.019 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 28 | 0.018 | |
| regulation of dna templated transcription elongation | GO:0032784 | 10 | 0.018 | |
| regulation of gene silencing by mirna | GO:0060964 | 4 | 0.018 | |
| phagocytosis | GO:0006909 | 66 | 0.018 | |
| regulation of chromatin organization | GO:1902275 | 57 | 0.018 | |
| regulation of system process | GO:0044057 | 200 | 0.018 | |
| gonad development | GO:0008406 | 141 | 0.018 | |
| exocytosis | GO:0006887 | 121 | 0.018 | |
| positive regulation of histone h3 k9 methylation | GO:0051574 | 4 | 0.017 | |
| regulation of cell cycle phase transition | GO:1901987 | 77 | 0.017 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.017 | |
| glycerolipid metabolic process | GO:0046486 | 122 | 0.017 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 12 | 0.017 | |
| embryonic placenta development | GO:0001892 | 98 | 0.017 | |
| rna processing | GO:0006396 | 105 | 0.017 | Rat |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.016 | |
| regulation of mitotic cell cycle | GO:0007346 | 126 | 0.016 | |
| cellular response to abiotic stimulus | GO:0071214 | 56 | 0.016 | |
| cellular response to nutrient levels | GO:0031669 | 64 | 0.016 | |
| regulation of cellular component size | GO:0032535 | 121 | 0.016 | |
| male meiosis | GO:0007140 | 37 | 0.016 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.016 | |
| macromolecular complex disassembly | GO:0032984 | 43 | 0.016 | |
| histone acetylation | GO:0016573 | 41 | 0.016 | |
| embryonic axis specification | GO:0000578 | 30 | 0.016 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.016 | |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.016 | |
| developmental maturation | GO:0021700 | 193 | 0.016 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 94 | 0.016 | |
| embryonic limb morphogenesis | GO:0030326 | 126 | 0.015 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.015 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.015 | |
| appendage development | GO:0048736 | 166 | 0.015 | |
| blastoderm segmentation | GO:0007350 | 13 | 0.015 | |
| positive regulation of protein kinase activity | GO:0045860 | 144 | 0.015 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.015 | |
| skeletal system development | GO:0001501 | 356 | 0.015 | |
| body morphogenesis | GO:0010171 | 45 | 0.015 | |
| lipid storage | GO:0019915 | 36 | 0.015 | |
| skeletal system morphogenesis | GO:0048705 | 203 | 0.015 | |
| maintenance of chromatin silencing | GO:0006344 | 2 | 0.015 | |
| cell fate commitment | GO:0045165 | 210 | 0.015 | |
| protein ubiquitination | GO:0016567 | 171 | 0.015 | |
| female gamete generation | GO:0007292 | 74 | 0.015 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.014 | |
| dna recombination | GO:0006310 | 92 | 0.014 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.014 | |
| formation of primary germ layer | GO:0001704 | 77 | 0.014 | |
| digestive tract morphogenesis | GO:0048546 | 147 | 0.014 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.014 | |
| cell maturation | GO:0048469 | 127 | 0.014 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.014 | |
| negative regulation of gene silencing | GO:0060969 | 2 | 0.014 | |
| erbb signaling pathway | GO:0038127 | 32 | 0.014 | |
| positive regulation of chromosome organization | GO:2001252 | 33 | 0.014 | |
| sensory perception | GO:0007600 | 245 | 0.014 | |
| positive regulation of synapse assembly | GO:0051965 | 18 | 0.014 | |
| blastocyst development | GO:0001824 | 80 | 0.013 | |
| cellular response to growth factor stimulus | GO:0071363 | 197 | 0.013 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.013 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.013 | |
| lymphocyte mediated immunity | GO:0002449 | 139 | 0.013 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.013 | |
| dna integrity checkpoint | GO:0031570 | 28 | 0.013 | |
| response to starvation | GO:0042594 | 65 | 0.013 | |
| regulation of actin polymerization or depolymerization | GO:0008064 | 45 | 0.013 | |
| posttranscriptional gene silencing by rna | GO:0035194 | 10 | 0.013 | |
| cell cycle g1 s phase transition | GO:0044843 | 57 | 0.013 | |
| adaptive immune response | GO:0002250 | 155 | 0.013 | |
| neural precursor cell proliferation | GO:0061351 | 121 | 0.013 | |
| actin filament polymerization | GO:0030041 | 44 | 0.013 | |
| negative regulation of wnt signaling pathway | GO:0030178 | 73 | 0.013 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.013 | |
| regulation of protein transport | GO:0051223 | 163 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.012 | |
| associative learning | GO:0008306 | 61 | 0.012 | |
| innate immune response | GO:0045087 | 157 | 0.012 | |
| response to growth factor | GO:0070848 | 198 | 0.012 | |
| response to oxidative stress | GO:0006979 | 123 | 0.012 | |
| asymmetric stem cell division | GO:0098722 | 3 | 0.012 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.012 | |
| positive regulation of innate immune response | GO:0045089 | 80 | 0.012 | |
| regulation of histone h3 k9 methylation | GO:0051570 | 8 | 0.012 | |
| regulation of innate immune response | GO:0045088 | 91 | 0.012 | |
| regulation of cell motility | GO:2000145 | 236 | 0.012 | |
| endodermal cell fate specification | GO:0001714 | 4 | 0.012 | |
| glucose homeostasis | GO:0042593 | 128 | 0.012 | |
| ossification | GO:0001503 | 216 | 0.012 | |
| positive regulation of synaptic growth at neuromuscular junction | GO:0045887 | 1 | 0.012 | |
| adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | GO:0002460 | 145 | 0.012 | |
| regulation of posttranscriptional gene silencing | GO:0060147 | 5 | 0.012 | |
| protein complex disassembly | GO:0043241 | 40 | 0.012 | |
| regulation of translation | GO:0006417 | 71 | 0.012 | |
| regulation of transcription during meiosis | GO:0051037 | 1 | 0.012 | |
| neural tube closure | GO:0001843 | 90 | 0.012 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 73 | 0.012 | |
| canonical wnt signaling pathway | GO:0060070 | 130 | 0.012 | |
| response to nutrient levels | GO:0031667 | 109 | 0.012 | |
| production of molecular mediator of immune response | GO:0002440 | 103 | 0.012 | |
| mrna metabolic process | GO:0016071 | 84 | 0.012 | Rat |
| carbohydrate homeostasis | GO:0033500 | 128 | 0.012 | |
| oogenesis | GO:0048477 | 56 | 0.011 | |
| regulation of autophagy | GO:0010506 | 30 | 0.011 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 45 | 0.011 | |
| peptidyl threonine modification | GO:0018210 | 31 | 0.011 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.011 | |
| respiratory system development | GO:0060541 | 190 | 0.011 | |
| morphogenesis of embryonic epithelium | GO:0016331 | 159 | 0.011 | |
| regulation of bmp signaling pathway | GO:0030510 | 60 | 0.011 | |
| endocytosis | GO:0006897 | 168 | 0.011 | |
| regulation of leukocyte mediated immunity | GO:0002703 | 104 | 0.011 | |
| gtp metabolic process | GO:0046039 | 144 | 0.011 | |
| organelle fission | GO:0048285 | 170 | 0.011 | |
| methylation | GO:0032259 | 134 | 0.011 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.011 | |
| tube formation | GO:0035148 | 140 | 0.011 | |
| cellular response to biotic stimulus | GO:0071216 | 92 | 0.011 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.011 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.011 | |
| inner ear morphogenesis | GO:0042472 | 101 | 0.011 | |
| regulation of anatomical structure size | GO:0090066 | 178 | 0.011 | |
| actin polymerization or depolymerization | GO:0008154 | 54 | 0.011 | |
| protein targeting | GO:0006605 | 143 | 0.011 | |
| positive regulation of mapk cascade | GO:0043410 | 170 | 0.011 | |
| limb morphogenesis | GO:0035108 | 149 | 0.011 | |
| negative regulation of mapk cascade | GO:0043409 | 65 | 0.011 | |
| regulation of protein localization | GO:0032880 | 231 | 0.011 | |
| learning | GO:0007612 | 98 | 0.011 | |
| immunoglobulin production | GO:0002377 | 73 | 0.011 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.011 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.011 | |
| embryonic hemopoiesis | GO:0035162 | 23 | 0.011 | |
| regulation of actin filament based process | GO:0032970 | 99 | 0.011 | |
| regulation of organ growth | GO:0046620 | 61 | 0.011 | |
| gland development | GO:0048732 | 330 | 0.011 | |
| cytokine production | GO:0001816 | 319 | 0.011 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.011 | |
| blood circulation | GO:0008015 | 195 | 0.011 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.011 | |
| synapse organization | GO:0050808 | 125 | 0.011 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.011 | |
| nuclear transport | GO:0051169 | 139 | 0.011 | |
| histone lysine methylation | GO:0034968 | 50 | 0.010 | |
| regulation of response to dna damage stimulus | GO:2001020 | 34 | 0.010 | |
| cognition | GO:0050890 | 149 | 0.010 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 48 | 0.010 | |
| intracellular protein transport | GO:0006886 | 204 | 0.010 | |
| protein processing | GO:0016485 | 163 | 0.010 | |
| smad protein signal transduction | GO:0060395 | 21 | 0.010 | |
| positive regulation of epithelial cell proliferation involved in lung morphogenesis | GO:0060501 | 3 | 0.010 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.010 | |
| histone methylation | GO:0016571 | 71 | 0.010 | |
| erk1 and erk2 cascade | GO:0070371 | 77 | 0.010 | |
| camera type eye development | GO:0043010 | 266 | 0.010 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 57 | 0.010 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 3 | 0.010 | |
| regulation of feeding behavior | GO:0060259 | 3 | 0.010 | |
