| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.317 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.312 | |
| actin filament based movement | GO:0030048 | 23 | 0.210 | |
| heterochromatin organization | GO:0070828 | 4 | 0.197 | |
| centromere complex assembly | GO:0034508 | 3 | 0.183 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.153 | |
| regulation of transcription by chromatin organization | GO:0034401 | 0 | 0.152 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.138 | |
| mrna transport | GO:0051028 | 13 | 0.137 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.134 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.129 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.113 | |
| regulation of protein stability | GO:0031647 | 52 | 0.098 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.085 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.081 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.076 | |
| camera type eye development | GO:0043010 | 266 | 0.073 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.073 | |
| cardiac muscle cell contraction | GO:0086003 | 7 | 0.072 | |
| dna metabolic process | GO:0006259 | 303 | 0.063 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.062 | |
| cell cycle checkpoint | GO:0000075 | 47 | 0.062 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.062 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.061 | |
| regulation of actin filament based process | GO:0032970 | 99 | 0.060 | |
| negative regulation of cell cycle | GO:0045786 | 123 | 0.057 | |
| chromosome segregation | GO:0007059 | 48 | 0.052 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.052 | |
| protein ubiquitination | GO:0016567 | 171 | 0.048 | |
| response to ionizing radiation | GO:0010212 | 42 | 0.047 | |
| dna alkylation | GO:0006305 | 43 | 0.047 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.046 | |
| organelle fission | GO:0048285 | 170 | 0.046 | |
| neuroblast differentiation | GO:0014016 | 2 | 0.046 | |
| heterochromatin assembly | GO:0031507 | 2 | 0.046 | |
| actin mediated cell contraction | GO:0070252 | 15 | 0.045 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.045 | |
| regulation of nucleoside metabolic process | GO:0009118 | 130 | 0.044 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.044 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.044 | |
| regulation of sequence specific dna binding transcription factor activity | GO:0051090 | 106 | 0.043 | |
| dna replication | GO:0006260 | 52 | 0.043 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.042 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.041 | |
| endocytosis | GO:0006897 | 168 | 0.041 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.040 | |
| membrane organization | GO:0061024 | 245 | 0.038 | |
| regulation of cell cycle phase transition | GO:1901987 | 77 | 0.038 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.038 | |
| chromatin organization | GO:0006325 | 206 | 0.038 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.037 | |
| genitalia development | GO:0048806 | 37 | 0.037 | |
| gene silencing | GO:0016458 | 38 | 0.037 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.036 | |
| dna hypermethylation | GO:0044026 | 3 | 0.034 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 45 | 0.034 | |
| dna modification | GO:0006304 | 50 | 0.033 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.033 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 49 | 0.032 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.031 | |
| amine metabolic process | GO:0009308 | 45 | 0.030 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.030 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.030 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 94 | 0.029 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.029 | |
| rna interference | GO:0016246 | 2 | 0.029 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.029 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.028 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.027 | |
| mrna transcription from rna polymerase ii promoter | GO:0042789 | 4 | 0.027 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.027 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.026 | |
| neural retina development | GO:0003407 | 41 | 0.026 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.026 | |
| protein localization to nucleus | GO:0034504 | 121 | 0.025 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.025 | |
| stem cell maintenance | GO:0019827 | 130 | 0.025 | |
| body morphogenesis | GO:0010171 | 45 | 0.025 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.024 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.024 | |
| meiotic cell cycle process | GO:1903046 | 77 | 0.024 | |
| regulation of histone modification | GO:0031056 | 56 | 0.024 | |
| regulation of dna replication | GO:0006275 | 17 | 0.024 | |
| mesodermal cell migration | GO:0008078 | 4 | 0.023 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.023 | |
| negative regulation of cell cycle process | GO:0010948 | 69 | 0.023 | |
| cell division | GO:0051301 | 120 | 0.023 | |
| covalent chromatin modification | GO:0016569 | 163 | 0.022 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 91 | 0.022 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.022 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.022 | |
| nuclear division | GO:0000280 | 158 | 0.022 | |
| response to growth factor | GO:0070848 | 198 | 0.021 | |
| regulation of chromatin modification | GO:1903308 | 57 | 0.021 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 57 | 0.021 | |
| stem cell development | GO:0048864 | 219 | 0.021 | |
| nucleus organization | GO:0006997 | 45 | 0.021 | |
| cellular response to organonitrogen compound | GO:0071417 | 145 | 0.021 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.021 | |
| mitotic g2 dna damage checkpoint | GO:0007095 | 8 | 0.021 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.020 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.020 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.020 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.020 | |
| regulation of nucleotide catabolic process | GO:0030811 | 122 | 0.019 | |
| dna templated transcription termination | GO:0006353 | 4 | 0.019 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.019 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 122 | 0.019 | |
| regulation of nuclear division | GO:0051783 | 56 | 0.019 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.019 | |
| protein localization to nuclear envelope | GO:0090435 | 2 | 0.019 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.019 | |
| dna conformation change | GO:0071103 | 37 | 0.019 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.019 | |
| microtubule based process | GO:0007017 | 236 | 0.019 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.018 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.018 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 73 | 0.018 | |
| engulfment of apoptotic cell | GO:0043652 | 3 | 0.018 | |
| chromatin modification | GO:0016568 | 187 | 0.018 | |
| dna methylation | GO:0006306 | 43 | 0.018 | |
| meiotic chromosome segregation | GO:0045132 | 19 | 0.018 | |
| cognition | GO:0050890 | 149 | 0.018 | |
| chromatin assembly or disassembly | GO:0006333 | 16 | 0.018 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 114 | 0.018 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 205 | 0.017 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.017 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.017 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.017 | |
| protein dna complex subunit organization | GO:0071824 | 28 | 0.017 | |
| retina development in camera type eye | GO:0060041 | 119 | 0.017 | |
| pro t cell differentiation | GO:0002572 | 3 | 0.017 | |
| protein acylation | GO:0043543 | 64 | 0.017 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 80 | 0.017 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 3 | 0.017 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.017 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 139 | 0.016 | |
| positive regulation of histone h3 k9 methylation | GO:0051574 | 4 | 0.016 | |
| nucleobase containing compound transport | GO:0015931 | 27 | 0.016 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.016 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 88 | 0.016 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.016 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.016 | |
| regulation of neural precursor cell proliferation | GO:2000177 | 70 | 0.016 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.016 | |
| regulation of body fluid levels | GO:0050878 | 162 | 0.015 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 57 | 0.015 | |
| maintenance of location | GO:0051235 | 89 | 0.015 | |
| sister chromatid segregation | GO:0000819 | 20 | 0.014 | |
| blood circulation | GO:0008015 | 195 | 0.014 | |
| establishment of rna localization | GO:0051236 | 18 | 0.014 | |
| actin cytoskeleton organization | GO:0030036 | 220 | 0.014 | |
| recombinational repair | GO:0000725 | 21 | 0.014 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.014 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.014 | |
| compound eye development | GO:0048749 | 1 | 0.014 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.014 | |
| forebrain development | GO:0030900 | 302 | 0.014 | |
| learning or memory | GO:0007611 | 148 | 0.014 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.014 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.014 | |
| sensory perception | GO:0007600 | 245 | 0.014 | |
| nucleic acid transport | GO:0050657 | 18 | 0.013 | |
| g protein coupled receptor signaling pathway coupled to cyclic nucleotide second messenger | GO:0007187 | 55 | 0.013 | |
| mrna catabolic process | GO:0006402 | 22 | 0.013 | |
| muscle contraction | GO:0006936 | 101 | 0.013 | |
| multi organism behavior | GO:0051705 | 62 | 0.013 | |
| maintenance of protein location in nucleus | GO:0051457 | 2 | 0.013 | |
| organic hydroxy compound metabolic process | GO:1901615 | 203 | 0.013 | |
| dna recombination | GO:0006310 | 92 | 0.013 | |
| cell cycle g1 s phase transition | GO:0044843 | 57 | 0.013 | |
| protein catabolic process | GO:0030163 | 221 | 0.013 | |
| dna packaging | GO:0006323 | 30 | 0.013 | |
| lipid biosynthetic process | GO:0008610 | 179 | 0.013 | |
| protein sumoylation | GO:0016925 | 14 | 0.013 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.013 | |
| response to radiation | GO:0009314 | 165 | 0.012 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.012 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.012 | |
| regulation of system process | GO:0044057 | 200 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.012 | |
| female gamete generation | GO:0007292 | 74 | 0.012 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 48 | 0.012 | |
| regulation of g1 s transition of mitotic cell cycle | GO:2000045 | 35 | 0.012 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 81 | 0.012 | |
| fat cell differentiation | GO:0045444 | 160 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.012 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.012 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.012 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.012 | |
| rna phosphodiester bond hydrolysis exonucleolytic | GO:0090503 | 4 | 0.012 | |
| cell fate commitment | GO:0045165 | 210 | 0.012 | |
| lung alveolus development | GO:0048286 | 45 | 0.012 | |
| protein localization to organelle | GO:0033365 | 185 | 0.011 | |
| lymphocyte differentiation | GO:0030098 | 242 | 0.011 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.011 | |
| regulation of striated muscle contraction | GO:0006942 | 25 | 0.011 | |
| regulation of cell activation | GO:0050865 | 289 | 0.011 | |
| rna transport | GO:0050658 | 18 | 0.011 | |
| cation transport | GO:0006812 | 399 | 0.011 | |
| nuclear export | GO:0051168 | 34 | 0.011 | |
| internal peptidyl lysine acetylation | GO:0018393 | 42 | 0.011 | |
| response to molecule of bacterial origin | GO:0002237 | 143 | 0.011 | |
| positive regulation of kinase activity | GO:0033674 | 155 | 0.011 | |
| cellular response to lipid | GO:0071396 | 145 | 0.011 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.011 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.011 | |
| cellular response to inorganic substance | GO:0071241 | 37 | 0.011 | |
| angiogenesis | GO:0001525 | 201 | 0.011 | |
| gonad development | GO:0008406 | 141 | 0.011 | |
| regulation of lymphocyte mediated immunity | GO:0002706 | 84 | 0.011 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.010 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.010 | |
| interspecies interaction between organisms | GO:0044419 | 83 | 0.010 | |
| regulation of muscle system process | GO:0090257 | 80 | 0.010 | |
