| mitochondrion organization | GO:0007005 | 134 | 0.133 | Yeast |
| pole plasm assembly | GO:0007315 | 2 | 0.057 | |
| transmembrane transport | GO:0055085 | 412 | 0.052 | |
| spermatogenesis | GO:0007283 | 284 | 0.052 | |
| oocyte axis specification | GO:0007309 | 2 | 0.042 | |
| male gamete generation | GO:0048232 | 285 | 0.041 | |
| rna processing | GO:0006396 | 105 | 0.041 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.039 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.038 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.037 | |
| translation | GO:0006412 | 93 | 0.034 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.033 | Yeast |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.033 | |
| germ cell development | GO:0007281 | 185 | 0.032 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.032 | |
| cation transport | GO:0006812 | 399 | 0.031 | |
| membrane organization | GO:0061024 | 245 | 0.028 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.028 | |
| protein maturation | GO:0051604 | 176 | 0.025 | Yeast |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.024 | |
| intrinsic apoptotic signaling pathway | GO:0097193 | 132 | 0.023 | |
| meiotic nuclear division | GO:0007126 | 115 | 0.023 | |
| cellular chemical homeostasis | GO:0055082 | 215 | 0.023 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.023 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.022 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.022 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.021 | |
| protein catabolic process | GO:0030163 | 221 | 0.021 | |
| cellular response to hormone stimulus | GO:0032870 | 150 | 0.021 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.021 | |
| organelle fission | GO:0048285 | 170 | 0.021 | |
| endocytosis | GO:0006897 | 168 | 0.020 | |
| multicellular organism growth | GO:0035264 | 161 | 0.020 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.020 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.019 | |
| microtubule based process | GO:0007017 | 236 | 0.019 | |
| mitochondrial calcium ion homeostasis | GO:0051560 | 7 | 0.019 | |
| developmental maturation | GO:0021700 | 193 | 0.019 | |
| cellular homeostasis | GO:0019725 | 240 | 0.019 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.019 | |
| cellular ion homeostasis | GO:0006873 | 165 | 0.019 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.018 | |
| spermatid development | GO:0007286 | 108 | 0.018 | |
| positive regulation of apoptotic process | GO:0043065 | 217 | 0.018 | |
| protein localization to organelle | GO:0033365 | 185 | 0.018 | Yeast |
| organelle localization | GO:0051640 | 179 | 0.018 | |
| cation homeostasis | GO:0055080 | 212 | 0.018 | |
| response to oxidative stress | GO:0006979 | 123 | 0.018 | |
| oocyte construction | GO:0007308 | 2 | 0.018 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.018 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.018 | |
| response to organic cyclic compound | GO:0014070 | 198 | 0.017 | |
| protein targeting | GO:0006605 | 143 | 0.017 | Yeast |
| regulation of organelle organization | GO:0033043 | 289 | 0.017 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.017 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.017 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.017 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.017 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.016 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.016 | |
| homeostasis of number of cells | GO:0048872 | 210 | 0.016 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.016 | |
| protein processing | GO:0016485 | 163 | 0.016 | Yeast |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.016 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 127 | 0.016 | |
| organic anion transport | GO:0015711 | 137 | 0.016 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.015 | |
| amine metabolic process | GO:0009308 | 45 | 0.015 | |
| epithelial tube morphogenesis | GO:0060562 | 303 | 0.015 | |
| locomotory behavior | GO:0007626 | 195 | 0.015 | |
| regulation of cell migration | GO:0030334 | 219 | 0.015 | |
| circadian rhythm | GO:0007623 | 114 | 0.015 | |
| muscle tissue development | GO:0060537 | 308 | 0.015 | |
| intracellular protein transport | GO:0006886 | 204 | 0.015 | Yeast |
| regulation of transferase activity | GO:0051338 | 263 | 0.015 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.015 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.015 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.015 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.015 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.014 | |
| spermatid differentiation | GO:0048515 | 115 | 0.014 | |
| cellular response to organonitrogen compound | GO:0071417 | 145 | 0.014 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.014 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.014 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.014 | |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.014 | |
| lateral inhibition | GO:0046331 | 1 | 0.014 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.014 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.014 | |
| cellular metal ion homeostasis | GO:0006875 | 151 | 0.014 | |
| b cell activation | GO:0042113 | 161 | 0.014 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 43 | 0.014 | |
| cell maturation | GO:0048469 | 127 | 0.014 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.013 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.013 | |
| rna splicing | GO:0008380 | 54 | 0.013 | |
| inorganic cation transmembrane transport | GO:0098662 | 207 | 0.013 | |
| glutamate biosynthetic process | GO:0006537 | 2 | 0.013 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.013 | |
| rna interference | GO:0016246 | 2 | 0.013 | |
| protein import | GO:0017038 | 101 | 0.013 | |
| regulation of cell activation | GO:0050865 | 289 | 0.013 | |
| rna splicing via transesterification reactions | GO:0000375 | 43 | 0.012 | |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.012 | |
| cellular response to cytokine stimulus | GO:0071345 | 189 | 0.012 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.012 | |
| oxidation reduction process | GO:0055114 | 342 | 0.012 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.012 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.012 | |
| protein localization to membrane | GO:0072657 | 108 | 0.012 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.012 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 192 | 0.012 | |
| regulation of ion transport | GO:0043269 | 215 | 0.012 | |
| cellularization | GO:0007349 | 1 | 0.012 | |
| anion transport | GO:0006820 | 177 | 0.012 | |
| multicellular organismal signaling | GO:0035637 | 91 | 0.012 | |
| male sex differentiation | GO:0046661 | 109 | 0.012 | |
| carboxylic acid biosynthetic process | GO:0046394 | 86 | 0.011 | |
| multi multicellular organism process | GO:0044706 | 109 | 0.011 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.011 | |
| oocyte differentiation | GO:0009994 | 35 | 0.011 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.011 | |
| neuron death | GO:0070997 | 154 | 0.011 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.011 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.011 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.011 | |
| regulation of lymphocyte activation | GO:0051249 | 240 | 0.011 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.011 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.011 | |
| stem cell differentiation | GO:0048863 | 268 | 0.011 | |
| regulation of cell motility | GO:2000145 | 236 | 0.011 | |
| establishment of protein localization to organelle | GO:0072594 | 118 | 0.011 | Yeast |
| fertilization | GO:0009566 | 127 | 0.011 | |
| alcohol metabolic process | GO:0006066 | 116 | 0.011 | |
| compound eye development | GO:0048749 | 1 | 0.011 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.011 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 183 | 0.011 | |
| cell adhesion | GO:0007155 | 329 | 0.011 | |
| dephosphorylation | GO:0016311 | 129 | 0.011 | |
| regulation of wnt signaling pathway | GO:0030111 | 123 | 0.010 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.010 | |
| nuclear division | GO:0000280 | 158 | 0.010 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.010 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.010 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.010 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.010 | |
| mitotic nuclear division | GO:0007067 | 48 | 0.010 | |
| response to acid chemical | GO:0001101 | 111 | 0.010 | |
| glutamine family amino acid biosynthetic process | GO:0009084 | 2 | 0.010 | |
| lymphocyte mediated immunity | GO:0002449 | 139 | 0.010 | |