| endomembrane system organization | GO:0010256 | 147 | 0.435 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.135 | |
| protein catabolic process | GO:0030163 | 221 | 0.093 | |
| protein maturation | GO:0051604 | 176 | 0.079 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.074 | |
| germ cell development | GO:0007281 | 185 | 0.072 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.070 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.069 | |
| membrane organization | GO:0061024 | 245 | 0.063 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.062 | |
| protein processing | GO:0016485 | 163 | 0.060 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.056 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.052 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.046 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 46 | 0.046 | |
| mitochondrion organization | GO:0007005 | 134 | 0.046 | |
| transmembrane transport | GO:0055085 | 412 | 0.044 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.044 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.041 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.040 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.039 | |
| negative regulation of protein processing | GO:0010955 | 79 | 0.039 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.039 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.038 | |
| negative regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032435 | 15 | 0.036 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.036 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.035 | |
| amine metabolic process | GO:0009308 | 45 | 0.034 | |
| viral budding | GO:0046755 | 1 | 0.034 | |
| regulation of cellular protein catabolic process | GO:1903362 | 61 | 0.033 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.033 | |
| protein localization to membrane | GO:0072657 | 108 | 0.032 | |
| microtubule based process | GO:0007017 | 236 | 0.032 | |
| ketone catabolic process | GO:0042182 | 3 | 0.032 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.030 | |
| regulation of cytoskeleton organization | GO:0051493 | 122 | 0.030 | |
| oxidation reduction process | GO:0055114 | 342 | 0.030 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.029 | |
| protein localization to organelle | GO:0033365 | 185 | 0.028 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.027 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.025 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.025 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.024 | |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.024 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.023 | |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 3 | 0.023 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.023 | |
| regulation of multi organism process | GO:0043900 | 111 | 0.023 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.023 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.021 | |
| cofactor metabolic process | GO:0051186 | 80 | 0.021 | |
| nuclear division | GO:0000280 | 158 | 0.021 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.020 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.020 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.020 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.020 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.020 | |
| negative regulation of phosphorylation | GO:0042326 | 166 | 0.019 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.019 | |
| maintenance of location | GO:0051235 | 89 | 0.019 | |
| rna processing | GO:0006396 | 105 | 0.019 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.018 | |
| oogenesis | GO:0048477 | 56 | 0.018 | |
| reactive oxygen species biosynthetic process | GO:1903409 | 8 | 0.018 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.017 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.017 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.017 | |
| interleukin 8 production | GO:0032637 | 4 | 0.017 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.017 | |
| female gamete generation | GO:0007292 | 74 | 0.017 | |
| male gamete generation | GO:0048232 | 285 | 0.017 | |
| negative regulation of cellular catabolic process | GO:0031330 | 47 | 0.017 | |
| neuron death | GO:0070997 | 154 | 0.017 | |
| endoplasmic reticulum tubular network organization | GO:0071786 | 1 | 0.017 | |
| developmental maturation | GO:0021700 | 193 | 0.016 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.016 | |
| organelle fission | GO:0048285 | 170 | 0.016 | |
| intracellular protein transport | GO:0006886 | 204 | 0.016 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.016 | |
| positive regulation of secretion by cell | GO:1903532 | 114 | 0.015 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 65 | 0.015 | |
| protein secretion | GO:0009306 | 111 | 0.015 | |
| acyl coa metabolic process | GO:0006637 | 19 | 0.014 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.014 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.014 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.014 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.014 | |
| regulation of anatomical structure size | GO:0090066 | 178 | 0.014 | |
| regulation of secretion | GO:0051046 | 274 | 0.014 | |
| cellular lipid metabolic process | GO:0044255 | 323 | 0.014 | |
| action potential | GO:0001508 | 78 | 0.013 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.013 | |
| cell maturation | GO:0048469 | 127 | 0.013 | |
| regulation of protein processing | GO:0070613 | 96 | 0.013 | |
| inflammatory response | GO:0006954 | 244 | 0.013 | |
| receptor biosynthetic process | GO:0032800 | 3 | 0.013 | |
| regulation of inflammatory response | GO:0050727 | 147 | 0.013 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.013 | |
| response to lipopolysaccharide | GO:0032496 | 128 | 0.013 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.013 | |
| negative regulation of organelle organization | GO:0010639 | 90 | 0.013 | |
| neuronal action potential | GO:0019228 | 54 | 0.013 | |
| small molecule biosynthetic process | GO:0044283 | 132 | 0.013 | |
| exocytosis | GO:0006887 | 121 | 0.013 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.013 | |
| multicellular organismal signaling | GO:0035637 | 91 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.012 | |
| regulation of er to golgi vesicle mediated transport | GO:0060628 | 4 | 0.012 | |
| lysosomal transport | GO:0007041 | 10 | 0.012 | |
| regulation of protein complex assembly | GO:0043254 | 83 | 0.012 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.012 | |
| blastocyst development | GO:0001824 | 80 | 0.012 | |
| stem cell differentiation | GO:0048863 | 268 | 0.012 | |
| plasma membrane organization | GO:0007009 | 90 | 0.012 | |
| ensheathment of neurons | GO:0007272 | 76 | 0.012 | |
| regulation of neuron apoptotic process | GO:0043523 | 122 | 0.012 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.012 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.012 | |
| cell division | GO:0051301 | 120 | 0.012 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.012 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.012 | |
| regulation of removal of superoxide radicals | GO:2000121 | 4 | 0.012 | |
| peptidyl amino acid modification | GO:0018193 | 336 | 0.012 | |
| monocarboxylic acid metabolic process | GO:0032787 | 191 | 0.012 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.011 | |
| response to molecule of bacterial origin | GO:0002237 | 143 | 0.011 | |
| skeletal system development | GO:0001501 | 356 | 0.011 | |
| reactive oxygen species metabolic process | GO:0072593 | 84 | 0.011 | |
| oocyte axis specification | GO:0007309 | 2 | 0.011 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.011 | |
| positive regulation of cell development | GO:0010720 | 237 | 0.011 | |
| tube formation | GO:0035148 | 140 | 0.011 | |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.011 | |
| cell growth | GO:0016049 | 130 | 0.011 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.011 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 224 | 0.011 | |
| gonad development | GO:0008406 | 141 | 0.011 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.011 | |
| oocyte differentiation | GO:0009994 | 35 | 0.011 | |
| molting cycle | GO:0042303 | 90 | 0.011 | |
| negative regulation of protein maturation | GO:1903318 | 79 | 0.011 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.010 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.010 | |
| digestive tract development | GO:0048565 | 190 | 0.010 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.010 | |
| digestive system development | GO:0055123 | 200 | 0.010 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.010 | |
| mapk cascade | GO:0000165 | 281 | 0.010 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.010 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.010 | |
