| protein modification by small protein conjugation | GO:0032446 | 187 | 0.319 | |
| positive regulation of cell projection organization | GO:0031346 | 95 | 0.161 | |
| guanosine containing compound catabolic process | GO:1901069 | 144 | 0.160 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.156 | |
| regulation of cell migration | GO:0030334 | 219 | 0.133 | |
| retrograde transport endosome to golgi | GO:0042147 | 2 | 0.130 | |
| synapse organization | GO:0050808 | 125 | 0.127 | |
| establishment of melanosome localization | GO:0032401 | 11 | 0.120 | |
| synaptic transmission | GO:0007268 | 329 | 0.120 | |
| organonitrogen compound catabolic process | GO:1901565 | 264 | 0.118 | |
| gtp catabolic process | GO:0006184 | 143 | 0.117 | |
| guanosine containing compound metabolic process | GO:1901068 | 144 | 0.116 | |
| regulation of cell projection organization | GO:0031344 | 206 | 0.106 | |
| purine ribonucleotide catabolic process | GO:0009154 | 208 | 0.105 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.104 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.098 | |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.097 | |
| exocytosis | GO:0006887 | 121 | 0.096 | |
| gtp metabolic process | GO:0046039 | 144 | 0.096 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.095 | |
| regulation of cell motility | GO:2000145 | 236 | 0.092 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 199 | 0.084 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.084 | |
| regulation of cellular component size | GO:0032535 | 121 | 0.083 | |
| pigmentation | GO:0043473 | 71 | 0.083 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 220 | 0.081 | |
| glycosyl compound catabolic process | GO:1901658 | 206 | 0.079 | |
| ras protein signal transduction | GO:0007265 | 77 | 0.076 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 203 | 0.076 | |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.074 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.073 | |
| purine ribonucleoside metabolic process | GO:0046128 | 241 | 0.070 | |
| carbohydrate derivative catabolic process | GO:1901136 | 231 | 0.070 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.067 | |
| intracellular protein transport | GO:0006886 | 204 | 0.067 | |
| melanosome localization | GO:0032400 | 12 | 0.066 | |
| purine ribonucleoside catabolic process | GO:0046130 | 205 | 0.064 | |
| vesicle localization | GO:0051648 | 86 | 0.063 | |
| protein catabolic process | GO:0030163 | 221 | 0.063 | |
| membrane organization | GO:0061024 | 245 | 0.062 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 230 | 0.060 | |
| positive regulation of cell migration | GO:0030335 | 109 | 0.060 | |
| mitotic cell cycle | GO:0000278 | 195 | 0.060 | |
| ribonucleotide metabolic process | GO:0009259 | 291 | 0.060 | |
| pole plasm assembly | GO:0007315 | 2 | 0.060 | |
| oocyte anterior posterior axis specification | GO:0007314 | 2 | 0.059 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.059 | |
| regulation of protein localization | GO:0032880 | 231 | 0.058 | |
| organelle localization | GO:0051640 | 179 | 0.056 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 205 | 0.054 | |
| regulation of anatomical structure size | GO:0090066 | 178 | 0.054 | |
| regulation of neuron projection development | GO:0010975 | 169 | 0.053 | |
| nucleoside phosphate catabolic process | GO:1901292 | 222 | 0.053 | |
| cell growth | GO:0016049 | 130 | 0.052 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.051 | |
| mitotic cell cycle process | GO:1903047 | 159 | 0.050 | |
| small gtpase mediated signal transduction | GO:0007264 | 97 | 0.049 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.049 | |
| establishment of vesicle localization | GO:0051650 | 81 | 0.048 | |
| glycosyl compound metabolic process | GO:1901657 | 246 | 0.047 | |
| nucleoside metabolic process | GO:0009116 | 246 | 0.047 | |
| autophagy | GO:0006914 | 45 | 0.047 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 220 | 0.046 | |
| ribonucleoside metabolic process | GO:0009119 | 245 | 0.046 | |
| regulation of neuron differentiation | GO:0045664 | 281 | 0.044 | |
| intra golgi vesicle mediated transport | GO:0006891 | 1 | 0.044 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.044 | |
| vesicle organization | GO:0016050 | 60 | 0.043 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.043 | |
| regulation of secretion | GO:0051046 | 274 | 0.041 | |
| ribonucleoside catabolic process | GO:0042454 | 206 | 0.041 | |
| purine nucleotide catabolic process | GO:0006195 | 211 | 0.040 | |
| ribonucleotide catabolic process | GO:0009261 | 208 | 0.040 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.040 | |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.039 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.039 | |
| nucleotide catabolic process | GO:0009166 | 217 | 0.039 | |
| regulation of jnk cascade | GO:0046328 | 62 | 0.038 | |
| purine nucleoside metabolic process | GO:0042278 | 241 | 0.038 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.038 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.037 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.037 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 94 | 0.037 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.036 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 2 | 0.036 | |
| pigment granule localization | GO:0051875 | 13 | 0.036 | |
| jnk cascade | GO:0007254 | 72 | 0.036 | |
| positive regulation of neuron differentiation | GO:0045666 | 141 | 0.036 | |
| membrane fusion | GO:0061025 | 38 | 0.036 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.036 | |
| establishment of pigment granule localization | GO:0051905 | 12 | 0.035 | |
| protein ubiquitination | GO:0016567 | 171 | 0.035 | |
| stem cell differentiation | GO:0048863 | 268 | 0.035 | |
| actin cytoskeleton organization | GO:0030036 | 220 | 0.034 | |
| positive regulation of cell development | GO:0010720 | 237 | 0.033 | |
| establishment of protein localization to vacuole | GO:0072666 | 4 | 0.033 | |
| protein localization to membrane | GO:0072657 | 108 | 0.033 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.032 | |
| rho protein signal transduction | GO:0007266 | 32 | 0.032 | |
| axonogenesis | GO:0007409 | 274 | 0.032 | |
| mapk cascade | GO:0000165 | 281 | 0.032 | |
| golgi vesicle transport | GO:0048193 | 30 | 0.031 | |
| protein targeting to vacuole | GO:0006623 | 3 | 0.031 | |
| nucleoside phosphate metabolic process | GO:0006753 | 338 | 0.030 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.030 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.029 | |
| nucleoside catabolic process | GO:0009164 | 206 | 0.029 | |
| purine nucleotide metabolic process | GO:0006163 | 302 | 0.029 | |
| meiotic cell cycle process | GO:1903046 | 77 | 0.029 | |
| positive regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032436 | 23 | 0.028 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.028 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.028 | |
| regulation of autophagy | GO:0010506 | 30 | 0.028 | |
| positive regulation of cell motility | GO:2000147 | 116 | 0.028 | |
| synapse assembly | GO:0007416 | 56 | 0.028 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.027 | |
| regulation of proteolysis | GO:0030162 | 164 | 0.027 | |
| protein refolding | GO:0042026 | 1 | 0.027 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.027 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.027 | |
| protein localization to vacuole | GO:0072665 | 4 | 0.026 | |
| response to light stimulus | GO:0009416 | 135 | 0.026 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.026 | |
| body morphogenesis | GO:0010171 | 45 | 0.026 | |
| stress activated protein kinase signaling cascade | GO:0031098 | 81 | 0.026 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 184 | 0.025 | |
| cation transport | GO:0006812 | 399 | 0.025 | |
| vesicle fusion | GO:0006906 | 16 | 0.025 | |
| positive regulation of protein catabolic process | GO:0045732 | 60 | 0.025 | |
| cell junction maintenance | GO:0034331 | 4 | 0.025 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.025 | |
| cellular ketone metabolic process | GO:0042180 | 84 | 0.025 | |
| response to radiation | GO:0009314 | 165 | 0.025 | |
| vacuole organization | GO:0007033 | 38 | 0.025 | |
| positive regulation of neuron projection development | GO:0010976 | 79 | 0.025 | |
| regionalization | GO:0003002 | 337 | 0.024 | |
| regulation of cell size | GO:0008361 | 72 | 0.024 | |
| endomembrane system organization | GO:0010256 | 147 | 0.024 | |
| regulation of ras protein signal transduction | GO:0046578 | 114 | 0.024 | |
| striated muscle cell development | GO:0055002 | 125 | 0.024 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.024 | |
| oocyte axis specification | GO:0007309 | 2 | 0.024 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.023 | |
| organelle assembly | GO:0070925 | 177 | 0.023 | |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.023 | |
| dendrite development | GO:0016358 | 115 | 0.023 | |
| negative regulation of synapse assembly | GO:0051964 | 3 | 0.023 | |
| ribose phosphate metabolic process | GO:0019693 | 291 | 0.023 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.022 | |
| regulation of neuron death | GO:1901214 | 134 | 0.022 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.022 | |
| regulation of cellular protein catabolic process | GO:1903362 | 61 | 0.022 | |
| amine metabolic process | GO:0009308 | 45 | 0.022 | |
| microtubule based process | GO:0007017 | 236 | 0.022 | |
| dna metabolic process | GO:0006259 | 303 | 0.022 | |
| developmental maturation | GO:0021700 | 193 | 0.022 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.022 | |
| endocytosis | GO:0006897 | 168 | 0.022 | |
| meiotic cell cycle | GO:0051321 | 122 | 0.022 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.021 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.021 | |
| protein localization to plasma membrane | GO:0072659 | 57 | 0.021 | |
| cell division | GO:0051301 | 120 | 0.021 | |
| ameboidal type cell migration | GO:0001667 | 128 | 0.020 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.020 | |
| regulation of intracellular transport | GO:0032386 | 159 | 0.020 | |
| oocyte construction | GO:0007308 | 2 | 0.020 | |
| establishment or maintenance of cell polarity | GO:0007163 | 86 | 0.020 | |
| peptide hormone secretion | GO:0030072 | 109 | 0.020 | |
| sensory perception | GO:0007600 | 245 | 0.019 | |
| pigment granule transport | GO:0051904 | 12 | 0.019 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.019 | |
| regulation of nucleotide catabolic process | GO:0030811 | 122 | 0.019 | |
| establishment of protein localization to membrane | GO:0090150 | 54 | 0.019 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.019 | |
| establishment of synaptic vesicle localization | GO:0097480 | 57 | 0.019 | |
| blood vessel morphogenesis | GO:0048514 | 285 | 0.019 | |
| cell adhesion | GO:0007155 | 329 | 0.019 | |
| regulation of transferase activity | GO:0051338 | 263 | 0.019 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.019 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.018 | |
| intracellular mrna localization | GO:0008298 | 4 | 0.018 | |
| protein targeting | GO:0006605 | 143 | 0.018 | |
| locomotory behavior | GO:0007626 | 195 | 0.018 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.018 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 31 | 0.018 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.018 | |
| regulation of synaptic vesicle exocytosis | GO:2000300 | 11 | 0.018 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.018 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.018 | |
| dephosphorylation | GO:0016311 | 129 | 0.018 | |
| positive regulation of hydrolase activity | GO:0051345 | 148 | 0.018 | |
| cellular response to organonitrogen compound | GO:0071417 | 145 | 0.018 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.018 | |
| gonad development | GO:0008406 | 141 | 0.018 | |
| regulation of protein serine threonine kinase activity | GO:0071900 | 157 | 0.017 | |
| detection of stimulus | GO:0051606 | 84 | 0.017 | |
| macromolecular complex disassembly | GO:0032984 | 43 | 0.017 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 2 | 0.017 | |
| muscle cell differentiation | GO:0042692 | 261 | 0.017 | |
| establishment of organelle localization | GO:0051656 | 122 | 0.017 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.017 | |
| striated muscle tissue development | GO:0014706 | 293 | 0.017 | |
| regulation of cell growth | GO:0001558 | 91 | 0.017 | |
| cell cycle g1 s phase transition | GO:0044843 | 57 | 0.017 | |
| peptide transport | GO:0015833 | 133 | 0.017 | |
| amide transport | GO:0042886 | 138 | 0.017 | |
| carbohydrate homeostasis | GO:0033500 | 128 | 0.016 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.016 | |
| purine ribonucleotide metabolic process | GO:0009150 | 290 | 0.016 | |
| muscle tissue development | GO:0060537 | 308 | 0.016 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.016 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 184 | 0.016 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.016 | |
| plasma membrane organization | GO:0007009 | 90 | 0.016 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.016 | |
| neurotransmitter transport | GO:0006836 | 76 | 0.016 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 122 | 0.016 | |
| regulation of stress activated mapk cascade | GO:0032872 | 69 | 0.016 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.016 | |
| nucleus localization | GO:0051647 | 20 | 0.016 | |
| regulation of mitotic cell cycle | GO:0007346 | 126 | 0.016 | |
| organelle fission | GO:0048285 | 170 | 0.016 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.016 | |
| regulation of cell cycle process | GO:0010564 | 160 | 0.015 | |
| toxin transport | GO:1901998 | 38 | 0.015 | |
| establishment or maintenance of cytoskeleton polarity | GO:0030952 | 2 | 0.015 | |
| epithelial cell migration | GO:0010631 | 63 | 0.015 | |
| rab protein signal transduction | GO:0032482 | 1 | 0.015 | |
| adherens junction maintenance | GO:0034334 | 1 | 0.015 | |
| response to organonitrogen compound | GO:0010243 | 246 | 0.015 | |
| microtubule cytoskeleton organization | GO:0000226 | 157 | 0.015 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.015 | |
| cellular homeostasis | GO:0019725 | 240 | 0.015 | |
| neuron death | GO:0070997 | 154 | 0.015 | |
| epithelium migration | GO:0090132 | 63 | 0.015 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 143 | 0.014 | |
| negative regulation of neuron death | GO:1901215 | 98 | 0.014 | |
| axon cargo transport | GO:0008088 | 33 | 0.014 | |
| transition metal ion transport | GO:0000041 | 38 | 0.014 | |
| substantia nigra development | GO:0021762 | 2 | 0.014 | |
| germline cell cycle switching mitotic to meiotic cell cycle | GO:0051729 | 1 | 0.014 | |
| maternal determination of anterior posterior axis embryo | GO:0008358 | 2 | 0.014 | |
| regulation of neuron apoptotic process | GO:0043523 | 122 | 0.014 | |
| formation of organ boundary | GO:0010160 | 1 | 0.014 | |
| positive regulation of mapk cascade | GO:0043410 | 170 | 0.014 | |
| regulation of vasculature development | GO:1901342 | 88 | 0.014 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 58 | 0.014 | |
| hormone secretion | GO:0046879 | 128 | 0.013 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.013 | |
| cellular response to nutrient levels | GO:0031669 | 64 | 0.013 | |
| peptidyl tyrosine phosphorylation | GO:0018108 | 143 | 0.013 | |
| cell cell junction organization | GO:0045216 | 72 | 0.013 | |
| positive regulation of cell cycle | GO:0045787 | 92 | 0.013 | |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 3 | 0.013 | |
| carbohydrate metabolic process | GO:0005975 | 230 | 0.013 | |
| epithelial cell development | GO:0002064 | 159 | 0.013 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.013 | |
| synaptic vesicle localization | GO:0097479 | 59 | 0.012 | |
| cellular pigmentation | GO:0033059 | 20 | 0.012 | |
| regulation of lipid metabolic process | GO:0019216 | 118 | 0.012 | |
| protein localization to organelle | GO:0033365 | 185 | 0.012 | |
| t cell activation | GO:0042110 | 289 | 0.012 | |
| insulin secretion | GO:0030073 | 89 | 0.012 | |
| regulation of cell division | GO:0051302 | 76 | 0.012 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 40 | 0.012 | |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.012 | |
| regulation of synaptic vesicle transport | GO:1902803 | 13 | 0.012 | |
| cellular chemical homeostasis | GO:0055082 | 215 | 0.012 | |
| myotube differentiation | GO:0014902 | 105 | 0.012 | |
| epithelial cell proliferation | GO:0050673 | 174 | 0.012 | |
| myotube cell development | GO:0014904 | 60 | 0.012 | |
| muscle cell development | GO:0055001 | 133 | 0.012 | |
| post golgi vesicle mediated transport | GO:0006892 | 13 | 0.012 | |
| meiotic cytokinesis | GO:0033206 | 5 | 0.012 | |
| positive regulation of transferase activity | GO:0051347 | 167 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.012 | |
| stem cell development | GO:0048864 | 219 | 0.011 | |
| negative regulation of cell cycle | GO:0045786 | 123 | 0.011 | |
| chromatin organization | GO:0006325 | 206 | 0.011 | |
| dna repair | GO:0006281 | 107 | 0.011 | |
| immune effector process | GO:0002252 | 321 | 0.011 | |
| regulation of cytoskeleton organization | GO:0051493 | 122 | 0.011 | |
| copii coated vesicle budding | GO:0090114 | 2 | 0.011 | |
| organelle fusion | GO:0048284 | 28 | 0.011 | |
| protein ubiquitination involved in ubiquitin dependent protein catabolic process | GO:0042787 | 25 | 0.011 | |
| development of primary sexual characteristics | GO:0045137 | 143 | 0.011 | |
| neuron projection guidance | GO:0097485 | 141 | 0.011 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.011 | |
| response to nutrient levels | GO:0031667 | 109 | 0.011 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.011 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.011 | |
| chemotaxis | GO:0006935 | 247 | 0.011 | |
| establishment or maintenance of microtubule cytoskeleton polarity | GO:0030951 | 1 | 0.011 | |
| peptide secretion | GO:0002790 | 114 | 0.011 | |
| cell fate determination involved in pattern specification | GO:0060582 | 1 | 0.011 | |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.011 | |
| negative regulation of protein phosphorylation | GO:0001933 | 126 | 0.011 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.011 | |
| negative regulation of protein ubiquitination | GO:0031397 | 19 | 0.011 | |
| cellular response to monosaccharide stimulus | GO:0071326 | 47 | 0.011 | |
| regulation of nucleotide metabolic process | GO:0006140 | 169 | 0.011 | |
| negative regulation of neuron apoptotic process | GO:0043524 | 92 | 0.011 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.010 | |
| regulation of purine nucleotide metabolic process | GO:1900542 | 169 | 0.010 | |
| cytokinetic process | GO:0032506 | 2 | 0.010 | |
| cellularization | GO:0007349 | 1 | 0.010 | |
| lipid localization | GO:0010876 | 126 | 0.010 | |
| macroautophagy | GO:0016236 | 21 | 0.010 | |