| membrane organization | GO:0061024 | 245 | 0.184 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 2 | 0.113 | |
| cellular macromolecule catabolic process | GO:0044265 | 206 | 0.100 | |
| regulation of synaptic growth at neuromuscular junction | GO:0008582 | 4 | 0.098 | |
| membrane fusion | GO:0061025 | 38 | 0.093 | |
| establishment of protein localization to membrane | GO:0090150 | 54 | 0.087 | |
| intracellular protein transport | GO:0006886 | 204 | 0.085 | |
| transmembrane transport | GO:0055085 | 412 | 0.077 | |
| regulation of cellular catabolic process | GO:0031329 | 242 | 0.075 | |
| regulation of synaptic plasticity | GO:0048167 | 87 | 0.065 | |
| protein maturation | GO:0051604 | 176 | 0.064 | |
| organelle fusion | GO:0048284 | 28 | 0.062 | |
| retrograde transport endosome to golgi | GO:0042147 | 2 | 0.061 | |
| cellular protein catabolic process | GO:0044257 | 155 | 0.058 | |
| apoptotic signaling pathway | GO:0097190 | 306 | 0.055 | |
| modification dependent protein catabolic process | GO:0019941 | 133 | 0.053 | |
| regulation of apoptotic signaling pathway | GO:2001233 | 197 | 0.052 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 133 | 0.052 | |
| macromolecule catabolic process | GO:0009057 | 281 | 0.051 | |
| positive regulation of protein modification process | GO:0031401 | 299 | 0.051 | |
| regulation of mapk cascade | GO:0043408 | 248 | 0.051 | |
| regulation of vesicle mediated transport | GO:0060627 | 139 | 0.050 | Mouse |
| negative regulation of cellular component organization | GO:0051129 | 194 | 0.049 | |
| regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032434 | 40 | 0.048 | |
| viral budding | GO:0046755 | 1 | 0.048 | |
| protein localization to membrane | GO:0072657 | 108 | 0.047 | |
| positive regulation of protein kinase activity | GO:0045860 | 144 | 0.046 | |
| rna processing | GO:0006396 | 105 | 0.045 | |
| regulation of organelle organization | GO:0033043 | 289 | 0.045 | |
| negative regulation of cellular catabolic process | GO:0031330 | 47 | 0.044 | |
| regulation of cell cycle | GO:0051726 | 281 | 0.044 | |
| cell adhesion | GO:0007155 | 329 | 0.043 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 147 | 0.043 | |
| synaptic transmission | GO:0007268 | 329 | 0.043 | Mouse |
| aromatic compound catabolic process | GO:0019439 | 286 | 0.042 | Mouse |
| regulation of proteolysis | GO:0030162 | 164 | 0.041 | |
| nitrogen compound transport | GO:0071705 | 271 | 0.040 | |
| protein modification by small protein conjugation | GO:0032446 | 187 | 0.040 | |
| regulation of cellular protein catabolic process | GO:1903362 | 61 | 0.039 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 56 | 0.038 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 2 | 0.037 | |
| ion transmembrane transport | GO:0034220 | 361 | 0.037 | |
| vesicle docking involved in exocytosis | GO:0006904 | 7 | 0.036 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 247 | 0.035 | |
| negative regulation of protein metabolic process | GO:0051248 | 282 | 0.035 | |
| regulation of hydrolase activity | GO:0051336 | 246 | 0.034 | |
| negative regulation of protein processing | GO:0010955 | 79 | 0.034 | |
| positive regulation of protein phosphorylation | GO:0001934 | 242 | 0.034 | |
| protein ubiquitination | GO:0016567 | 171 | 0.033 | |
| regulation of cell motility | GO:2000145 | 236 | 0.033 | |
| cytoplasmic transport | GO:0016482 | 234 | 0.032 | |
| regulation of cell migration | GO:0030334 | 219 | 0.032 | |
| regulation of protein maturation | GO:1903317 | 96 | 0.031 | |
| protein processing | GO:0016485 | 163 | 0.031 | |
| positive regulation of proteolysis involved in cellular protein catabolic process | GO:1903052 | 31 | 0.031 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 46 | 0.030 | |
| exocytosis | GO:0006887 | 121 | 0.030 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 129 | 0.029 | |
| iron sulfur cluster assembly | GO:0016226 | 3 | 0.029 | |
| cellular amino acid metabolic process | GO:0006520 | 103 | 0.028 | |
| negative regulation of synapse assembly | GO:0051964 | 3 | 0.028 | |
| organelle localization | GO:0051640 | 179 | 0.027 | Mouse |
| positive regulation of proteolysis | GO:0045862 | 85 | 0.027 | |
| protein palmitoylation | GO:0018345 | 14 | 0.026 | |
| positive regulation of transferase activity | GO:0051347 | 167 | 0.026 | |
| negative regulation of molecular function | GO:0044092 | 258 | 0.026 | |
| vesicle fusion | GO:0006906 | 16 | 0.025 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 352 | 0.025 | Mouse |
| regulation of secretion | GO:0051046 | 274 | 0.024 | |
| regulation of cellular component biogenesis | GO:0044087 | 181 | 0.024 | Mouse |
| regulation of cellular amine metabolic process | GO:0033238 | 20 | 0.023 | |
| cation transport | GO:0006812 | 399 | 0.023 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 57 | 0.023 | |
| cellular protein complex assembly | GO:0043623 | 116 | 0.023 | |
| protein catabolic process | GO:0030163 | 221 | 0.023 | |
| regulation of membrane potential | GO:0042391 | 192 | 0.023 | |
| plasma membrane organization | GO:0007009 | 90 | 0.022 | |
| negative regulation of proteolysis | GO:0045861 | 74 | 0.022 | |
| positive regulation of mapk cascade | GO:0043410 | 170 | 0.022 | |
| regulation of protein processing | GO:0070613 | 96 | 0.022 | |
| synaptic vesicle priming | GO:0016082 | 8 | 0.022 | |
| regulation of cell growth | GO:0001558 | 91 | 0.021 | |
| mitochondrion organization | GO:0007005 | 134 | 0.021 | |
| regulation of establishment of protein localization | GO:0070201 | 181 | 0.021 | |
| establishment of synaptic vesicle localization | GO:0097480 | 57 | 0.021 | |
| inorganic ion transmembrane transport | GO:0098660 | 234 | 0.021 | |
| negative regulation of protein maturation | GO:1903318 | 79 | 0.020 | |
| protein localization to organelle | GO:0033365 | 185 | 0.020 | |
| regulation of protein localization | GO:0032880 | 231 | 0.020 | |
| nucleotide metabolic process | GO:0009117 | 332 | 0.020 | Mouse |
| regulation of transferase activity | GO:0051338 | 263 | 0.020 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 280 | 0.019 | Mouse |
| ossification | GO:0001503 | 216 | 0.019 | |
| myeloid cell differentiation | GO:0030099 | 233 | 0.019 | |
| trna wobble uridine modification | GO:0002098 | 2 | 0.019 | |
| vesicle organization | GO:0016050 | 60 | 0.019 | |
| regulation of protein kinase activity | GO:0045859 | 232 | 0.019 | |
| heterocycle catabolic process | GO:0046700 | 280 | 0.019 | Mouse |
| divalent inorganic cation transport | GO:0072511 | 178 | 0.019 | |
| regulation of cell adhesion | GO:0030155 | 154 | 0.019 | |
| inorganic cation transmembrane transport | GO:0098662 | 207 | 0.019 | |
| mapk cascade | GO:0000165 | 281 | 0.018 | |
| regulation of protein catabolic process | GO:0042176 | 108 | 0.018 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 88 | 0.018 | |
| protein targeting | GO:0006605 | 143 | 0.018 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 5 | 0.018 | |
| regulation of excitatory postsynaptic membrane potential | GO:0060079 | 41 | 0.018 | |
| proteasomal protein catabolic process | GO:0010498 | 98 | 0.018 | |
| peptide transport | GO:0015833 | 133 | 0.018 | |
| peptide hormone secretion | GO:0030072 | 109 | 0.017 | |
| positive regulation of growth | GO:0045927 | 104 | 0.017 | |
| male gamete generation | GO:0048232 | 285 | 0.017 | |
| positive regulation of secretion by cell | GO:1903532 | 114 | 0.017 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 3 | 0.017 | |
| negative regulation of apoptotic signaling pathway | GO:2001234 | 104 | 0.016 | |
| ubiquitin dependent protein catabolic process via the multivesicular body sorting pathway | GO:0043162 | 3 | 0.016 | |
| synaptic vesicle transport | GO:0048489 | 57 | 0.016 | |
| synapse assembly | GO:0007416 | 56 | 0.016 | Mouse |
| amine metabolic process | GO:0009308 | 45 | 0.016 | |
| regulation of intrinsic apoptotic signaling pathway | GO:2001242 | 61 | 0.016 | |
| regulation of secretion by cell | GO:1903530 | 249 | 0.016 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 66 | 0.016 | |
| positive regulation of protein modification by small protein conjugation or removal | GO:1903322 | 30 | 0.016 | |
| compound eye development | GO:0048749 | 1 | 0.016 | |
| regulation of cysteine type endopeptidase activity | GO:2000116 | 65 | 0.016 | |
| cellular chemical homeostasis | GO:0055082 | 215 | 0.016 | |
| response to monosaccharide | GO:0034284 | 67 | 0.016 | |
| regulation of kinase activity | GO:0043549 | 249 | 0.016 | |
| virion assembly | GO:0019068 | 1 | 0.016 | |
| response to nutrient levels | GO:0031667 | 109 | 0.016 | |
| cellular response to dna damage stimulus | GO:0006974 | 207 | 0.016 | |
| response to starvation | GO:0042594 | 65 | 0.015 | |
| long term synaptic potentiation | GO:0060291 | 25 | 0.015 | |
| multicellular organismal signaling | GO:0035637 | 91 | 0.015 | |
| cell growth | GO:0016049 | 130 | 0.015 | |
| cellular response to transforming growth factor beta stimulus | GO:0071560 | 88 | 0.015 | |
| regulation of protein transport | GO:0051223 | 163 | 0.015 | |
| purine nucleoside catabolic process | GO:0006152 | 205 | 0.015 | Mouse |
| response to radiation | GO:0009314 | 165 | 0.015 | |
| vacuole organization | GO:0007033 | 38 | 0.015 | |
| regulation of cellular response to stress | GO:0080135 | 159 | 0.015 | |
| cation transmembrane transport | GO:0098655 | 266 | 0.015 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 167 | 0.014 | |
| extrinsic apoptotic signaling pathway | GO:0097191 | 126 | 0.014 | |
| regulation of epithelial cell proliferation | GO:0050678 | 141 | 0.014 | |
| spermatogenesis | GO:0007283 | 284 | 0.014 | |
| neuronal action potential | GO:0019228 | 54 | 0.014 | |
| regulation of protein ubiquitination | GO:0031396 | 52 | 0.014 | |
| peptide secretion | GO:0002790 | 114 | 0.014 | |
| purine containing compound metabolic process | GO:0072521 | 311 | 0.014 | Mouse |
| digestive tract morphogenesis | GO:0048546 | 147 | 0.014 | |
| action potential | GO:0001508 | 78 | 0.014 | |
| positive regulation of programmed cell death | GO:0043068 | 218 | 0.014 | |
| cellular amine metabolic process | GO:0044106 | 44 | 0.014 | |
| regulation of mrna processing | GO:0050684 | 41 | 0.014 | |
| digestive tract development | GO:0048565 | 190 | 0.014 | |
| positive regulation of kinase activity | GO:0033674 | 155 | 0.014 | |
| negative regulation of protein modification process | GO:0031400 | 163 | 0.014 | |
| organic cyclic compound catabolic process | GO:1901361 | 295 | 0.014 | Mouse |
| protein modification by small protein conjugation or removal | GO:0070647 | 207 | 0.014 | |
| negative regulation of growth | GO:0045926 | 99 | 0.013 | |
| response to extracellular stimulus | GO:0009991 | 127 | 0.013 | |
| organophosphate catabolic process | GO:0046434 | 232 | 0.013 | Mouse |
| posttranscriptional regulation of gene expression | GO:0010608 | 155 | 0.013 | |
| regulation of neuron apoptotic process | GO:0043523 | 122 | 0.013 | |
| blood vessel morphogenesis | GO:0048514 | 285 | 0.013 | |
| purine containing compound catabolic process | GO:0072523 | 213 | 0.013 | Mouse |
| cellular response to growth factor stimulus | GO:0071363 | 197 | 0.013 | |
| cytokine production | GO:0001816 | 319 | 0.013 | |
| negative regulation of neuron death | GO:1901215 | 98 | 0.013 | |
| synaptic vesicle localization | GO:0097479 | 59 | 0.013 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 5 | 0.013 | |
| endomembrane system organization | GO:0010256 | 147 | 0.013 | Mouse |
| negative regulation of cellular protein catabolic process | GO:1903363 | 22 | 0.013 | |
| neuromuscular process | GO:0050905 | 99 | 0.013 | |
| divalent metal ion transport | GO:0070838 | 172 | 0.013 | |
| regulation of neurotransmitter levels | GO:0001505 | 87 | 0.013 | |
| response to growth factor | GO:0070848 | 198 | 0.013 | |
| synapse organization | GO:0050808 | 125 | 0.013 | Mouse |
| intrinsic apoptotic signaling pathway | GO:0097193 | 132 | 0.013 | |
| wnt signaling pathway | GO:0016055 | 188 | 0.013 | |
| positive regulation of protein catabolic process | GO:0045732 | 60 | 0.013 | |
| regulation of synaptic vesicle priming | GO:0010807 | 4 | 0.013 | |
| transmission of nerve impulse | GO:0019226 | 76 | 0.012 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 226 | 0.012 | Mouse |
| regulation of cell morphogenesis involved in differentiation | GO:0010769 | 151 | 0.012 | |
| rna splicing | GO:0008380 | 54 | 0.012 | |
| hormone secretion | GO:0046879 | 128 | 0.012 | |
| cellular homeostasis | GO:0019725 | 240 | 0.012 | |
| transmembrane receptor protein serine threonine kinase signaling pathway | GO:0007178 | 194 | 0.012 | |
| amide transport | GO:0042886 | 138 | 0.012 | |
| trna wobble base modification | GO:0002097 | 2 | 0.012 | |
| regulation of protein complex assembly | GO:0043254 | 83 | 0.012 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 199 | 0.012 | Mouse |
| notch signaling pathway | GO:0007219 | 71 | 0.012 | |
| nucleocytoplasmic transport | GO:0006913 | 139 | 0.012 | |
| regulation of postsynaptic membrane potential | GO:0060078 | 48 | 0.012 | |
| vesicle localization | GO:0051648 | 86 | 0.012 | Mouse |
| positive regulation of nervous system development | GO:0051962 | 221 | 0.012 | |
| protein localization to plasma membrane | GO:0072659 | 57 | 0.012 | |
| angiogenesis | GO:0001525 | 201 | 0.012 | |
| single organism cell adhesion | GO:0098602 | 156 | 0.012 | |
| regulation of mrna metabolic process | GO:1903311 | 43 | 0.012 | |
| microtubule based process | GO:0007017 | 236 | 0.012 | |
| calcium ion dependent exocytosis | GO:0017156 | 35 | 0.012 | |
| cellular response to extracellular stimulus | GO:0031668 | 81 | 0.012 | |
| cell division | GO:0051301 | 120 | 0.012 | |
| regulation of cytoplasmic transport | GO:1903649 | 112 | 0.012 | |
| germ cell development | GO:0007281 | 185 | 0.011 | |
| macroautophagy | GO:0016236 | 21 | 0.011 | |
| canonical wnt signaling pathway | GO:0060070 | 130 | 0.011 | |
| multicellular organism growth | GO:0035264 | 161 | 0.011 | |
| methylation | GO:0032259 | 134 | 0.011 | |
| negative regulation of cell cycle | GO:0045786 | 123 | 0.011 | |
| positive regulation of secretion | GO:0051047 | 130 | 0.011 | |
| positive regulation of cellular protein catabolic process | GO:1903364 | 34 | 0.011 | |
| establishment of vesicle localization | GO:0051650 | 81 | 0.011 | Mouse |
| regulation of endopeptidase activity | GO:0052548 | 89 | 0.011 | |
| regulation of release of cytochrome c from mitochondria | GO:0090199 | 11 | 0.011 | |
| regulation of cytokine production | GO:0001817 | 266 | 0.011 | |
| mrna metabolic process | GO:0016071 | 84 | 0.011 | |
| regulation of intracellular protein transport | GO:0033157 | 82 | 0.011 | |
| positive regulation of cell growth | GO:0030307 | 33 | 0.011 | |
| cell fate commitment | GO:0045165 | 210 | 0.011 | |
| positive regulation of cellular catabolic process | GO:0031331 | 148 | 0.011 | |
| regulation of hormone levels | GO:0010817 | 211 | 0.011 | |
| gastrulation | GO:0007369 | 116 | 0.011 | |
| axonogenesis | GO:0007409 | 274 | 0.011 | |
| negative regulation of nervous system development | GO:0051961 | 156 | 0.011 | |
| interleukin 8 production | GO:0032637 | 4 | 0.011 | |
| positive regulation of peptide secretion | GO:0002793 | 33 | 0.011 | |
| myelination | GO:0042552 | 74 | 0.010 | |
| insulin secretion | GO:0030073 | 89 | 0.010 | |
| regulation of transmembrane receptor protein serine threonine kinase signaling pathway | GO:0090092 | 112 | 0.010 | |
| cell type specific apoptotic process | GO:0097285 | 268 | 0.010 | |
| regulation of interleukin 8 production | GO:0032677 | 3 | 0.010 | |
| establishment of protein localization to plasma membrane | GO:0090002 | 34 | 0.010 | |
| neuron apoptotic process | GO:0051402 | 142 | 0.010 | |
| peptidyl serine phosphorylation | GO:0018105 | 74 | 0.010 | |
| negative regulation of proteasomal ubiquitin dependent protein catabolic process | GO:0032435 | 15 | 0.010 | |
| cellularization | GO:0007349 | 1 | 0.010 | |
| interspecies interaction between organisms | GO:0044419 | 83 | 0.010 | |
| response to transforming growth factor beta | GO:0071559 | 88 | 0.010 | |
| kidney development | GO:0001822 | 213 | 0.010 | |
| nuclear transport | GO:0051169 | 139 | 0.010 | |
