| protein modification by small protein conjugation or removal | GO:0070647 | 35 | 0.044 | Fly |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.043 | |
| homeostatic process | GO:0042592 | 331 | 0.037 | |
| muscle system process | GO:0003012 | 115 | 0.033 | |
| response to carbohydrate | GO:0009743 | 183 | 0.032 | |
| rna metabolic process | GO:0016070 | 406 | 0.030 | |
| chemical homeostasis | GO:0048878 | 292 | 0.030 | |
| proteolysis | GO:0006508 | 175 | 0.029 | Fly |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.029 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.028 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.027 | |
| cellular homeostasis | GO:0019725 | 252 | 0.026 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.023 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.022 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.022 | |
| transmembrane transport | GO:0055085 | 412 | 0.021 | |
| gland development | GO:0048732 | 155 | 0.021 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.019 | |
| cellular component assembly | GO:0022607 | 360 | 0.019 | |
| cation transmembrane transport | GO:0098655 | 263 | 0.019 | |
| glucose homeostasis | GO:0042593 | 75 | 0.019 | |
| reproduction | GO:0000003 | 245 | 0.018 | |
| response to hexose | GO:0009746 | 144 | 0.018 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.017 | |
| inorganic ion transmembrane transport | GO:0098660 | 229 | 0.017 | |
| ion transmembrane transport | GO:0034220 | 365 | 0.017 | |
| neuron differentiation | GO:0030182 | 368 | 0.016 | Fly |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.016 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.015 | |
| secretion | GO:0046903 | 307 | 0.015 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.015 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.015 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 234 | 0.015 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.015 | |
| regulation of secretion by cell | GO:1903530 | 208 | 0.015 | |
| response to glucose | GO:0009749 | 136 | 0.014 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.014 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.014 | |
| cellular response to glucose stimulus | GO:0071333 | 65 | 0.014 | |
| cellular lipid metabolic process | GO:0044255 | 208 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 37 | 0.014 | |
| cation transport | GO:0006812 | 382 | 0.014 | |
| carbohydrate homeostasis | GO:0033500 | 75 | 0.013 | |
| response to nutrient levels | GO:0031667 | 370 | 0.013 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.013 | |
| amine metabolic process | GO:0009308 | 38 | 0.013 | |
| catabolic process | GO:0009056 | 351 | 0.013 | |
| regulation of system process | GO:0044057 | 208 | 0.013 | |
| anatomical structure morphogenesis | GO:0009653 | 298 | 0.013 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.013 | |
| regulation of secretion | GO:0051046 | 224 | 0.012 | |
| ion homeostasis | GO:0050801 | 212 | 0.012 | |
| ncrna processing | GO:0034470 | 3 | 0.012 | |
| regulation of hormone levels | GO:0010817 | 187 | 0.012 | |
| regulation of muscle system process | GO:0090257 | 79 | 0.012 | |
| regulation of cellular localization | GO:0060341 | 263 | 0.012 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.012 | |
| transcription dna templated | GO:0006351 | 377 | 0.012 | |
| regulation of signal transduction | GO:0009966 | 318 | 0.012 | Fly |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.012 | |
| cellular response to endogenous stimulus | GO:0071495 | 377 | 0.012 | |
| cellular metal ion homeostasis | GO:0006875 | 172 | 0.011 | |
| cell projection organization | GO:0030030 | 302 | 0.011 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.011 | |
| secretion by cell | GO:0032940 | 248 | 0.011 | |
| reproductive process | GO:0022414 | 372 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.011 | |
| cytoplasmic transport | GO:0016482 | 115 | 0.011 | |
| cellular response to hexose stimulus | GO:0071331 | 65 | 0.010 | |
| response to monosaccharide | GO:0034284 | 159 | 0.010 | |
| central nervous system development | GO:0007417 | 311 | 0.010 | |
| cellular response to stress | GO:0033554 | 269 | 0.010 | |
