| positive regulation of protein phosphorylation | GO:0001934 | 135 | 0.131 | |
| response to oxidative stress | GO:0006979 | 186 | 0.077 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.064 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.056 | |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.056 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.054 | |
| cell growth | GO:0016049 | 104 | 0.053 | |
| response to monosaccharide | GO:0034284 | 159 | 0.053 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.053 | Rat |
| regulation of protein modification process | GO:0031399 | 194 | 0.051 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.049 | |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.048 | |
| response to estradiol | GO:0032355 | 164 | 0.045 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.043 | |
| cellular component assembly | GO:0022607 | 360 | 0.040 | Rat |
| protein phosphorylation | GO:0006468 | 345 | 0.038 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.037 | Rat |
| cellular component biogenesis | GO:0044085 | 368 | 0.036 | Rat |
| regulation of catalytic activity | GO:0050790 | 304 | 0.036 | |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.035 | |
| response to inorganic substance | GO:0010035 | 377 | 0.035 | |
| response to carbohydrate | GO:0009743 | 183 | 0.034 | |
| dephosphorylation | GO:0016311 | 98 | 0.029 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.029 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.027 | |
| regulation of cell proliferation | GO:0042127 | 359 | 0.026 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.026 | |
| response to nutrient levels | GO:0031667 | 370 | 0.026 | |
| regulation of protein kinase activity | GO:0045859 | 105 | 0.026 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.026 | |
| regulation of protein phosphorylation | GO:0001932 | 183 | 0.025 | |
| cellular response to oxidative stress | GO:0034599 | 76 | 0.025 | |
| cellular response to growth factor stimulus | GO:0071363 | 162 | 0.025 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.025 | |
| cellular response to reactive oxygen species | GO:0034614 | 55 | 0.024 | |
| regulation of molecular function | GO:0065009 | 398 | 0.024 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.024 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.022 | |
| protein oligomerization | GO:0051259 | 191 | 0.022 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.021 | |
| sorbitol biosynthetic process | GO:0006061 | 1 | 0.021 | |
| regulation of kinase activity | GO:0043549 | 117 | 0.020 | |
| negative regulation of response to stimulus | GO:0048585 | 155 | 0.020 | |
| single organism biosynthetic process | GO:0044711 | 342 | 0.020 | |
| amine metabolic process | GO:0009308 | 38 | 0.019 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 167 | 0.019 | |
| platelet aggregation | GO:0070527 | 4 | 0.019 | |
| regulation of cell development | GO:0060284 | 263 | 0.019 | |
| response to hexose | GO:0009746 | 144 | 0.019 | |
| positive regulation of protein modification process | GO:0031401 | 142 | 0.019 | |
| taxis | GO:0042330 | 67 | 0.018 | |
| response to glucose | GO:0009749 | 136 | 0.018 | |
| protein targeting | GO:0006605 | 61 | 0.018 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.018 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.018 | |
| cyclic nucleotide metabolic process | GO:0009187 | 80 | 0.017 | |
| regulation of cell motility | GO:2000145 | 131 | 0.017 | |
| chemical homeostasis | GO:0048878 | 292 | 0.017 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.017 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.017 | |
| gastrulation | GO:0007369 | 2 | 0.017 | |
| ribosomal small subunit biogenesis | GO:0042274 | 6 | 0.016 | Rat |
| single organism catabolic process | GO:0044712 | 283 | 0.016 | |
| positive regulation of protein metabolic process | GO:0051247 | 178 | 0.016 | |
| nucleoside metabolic process | GO:0009116 | 179 | 0.016 | |
| hexose metabolic process | GO:0019318 | 58 | 0.016 | |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.016 | |
| protein localization | GO:0008104 | 191 | 0.016 | |
| translational initiation | GO:0006413 | 8 | 0.016 | Rat |
| negative regulation of catalytic activity | GO:0043086 | 103 | 0.016 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.015 | |
| rna metabolic process | GO:0016070 | 406 | 0.015 | |
| regulation of transferase activity | GO:0051338 | 123 | 0.015 | |
| gamete generation | GO:0007276 | 124 | 0.015 | |
| establishment of protein localization | GO:0045184 | 141 | 0.015 | |
| peptidyl amino acid modification | GO:0018193 | 126 | 0.015 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 161 | 0.014 | |
| neuron projection morphogenesis | GO:0048812 | 122 | 0.014 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 80 | 0.014 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.014 | |
| response to peptide | GO:1901652 | 292 | 0.014 | |
| camp metabolic process | GO:0046058 | 63 | 0.014 | |
| aging | GO:0007568 | 241 | 0.014 | |
| positive regulation of camp metabolic process | GO:0030816 | 31 | 0.014 | |
| triglyceride homeostasis | GO:0070328 | 2 | 0.014 | |
| localization of cell | GO:0051674 | 202 | 0.013 | |
| positive regulation of secretion by cell | GO:1903532 | 128 | 0.013 | |
| organophosphate biosynthetic process | GO:0090407 | 143 | 0.013 | |
| catabolic process | GO:0009056 | 351 | 0.013 | |
| reproductive process | GO:0022414 | 372 | 0.013 | |
| homeostatic process | GO:0042592 | 331 | 0.013 | |
| single organism reproductive process | GO:0044702 | 297 | 0.013 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.013 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 141 | 0.013 | |
| cellular component morphogenesis | GO:0032989 | 155 | 0.013 | |
| growth | GO:0040007 | 165 | 0.013 | |
| response to nutrient | GO:0007584 | 248 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.012 | |
| cellular homeostasis | GO:0019725 | 252 | 0.012 | |
| cell morphogenesis involved in neuron differentiation | GO:0048667 | 106 | 0.012 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.012 | |
| cytoplasmic translation | GO:0002181 | 1 | 0.012 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 102 | 0.012 | |
| organelle assembly | GO:0070925 | 22 | 0.012 | Rat |
| organophosphate metabolic process | GO:0019637 | 370 | 0.012 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.012 | |
| multicellular organism reproduction | GO:0032504 | 233 | 0.011 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 163 | 0.011 | |
| erythrocyte differentiation | GO:0030218 | 1 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.011 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.011 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.011 | |
| negative regulation of cell communication | GO:0010648 | 158 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 161 | 0.011 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.011 | |
| intracellular transport | GO:0046907 | 185 | 0.011 | |
| macromolecule localization | GO:0033036 | 252 | 0.010 | |
| protein complex assembly | GO:0006461 | 263 | 0.010 | |
| axon development | GO:0061564 | 96 | 0.010 | |
| neuron projection guidance | GO:0097485 | 24 | 0.010 | |
| negative regulation of transport | GO:0051051 | 136 | 0.010 | |
| gland development | GO:0048732 | 155 | 0.010 | |
| cellular component movement | GO:0006928 | 248 | 0.010 | |
| ribonucleotide metabolic process | GO:0009259 | 231 | 0.010 | |
| dorsal ventral pattern formation | GO:0009953 | 4 | 0.010 | |
