| negative regulation of nitrogen compound metabolic process | GO:0051172 | 161 | 0.227 | Yeast |
| positive regulation of gene expression | GO:0010628 | 244 | 0.125 | |
| rna metabolic process | GO:0016070 | 406 | 0.120 | Human Yeast Fly |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.100 | Yeast |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.092 | Fly |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.090 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 117 | 0.081 | Yeast |
| amine metabolic process | GO:0009308 | 38 | 0.076 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 197 | 0.074 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.074 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.074 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.064 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.064 | Yeast Fly |
| regulation of molecular function | GO:0065009 | 398 | 0.064 | |
| response to peptide hormone | GO:0043434 | 278 | 0.062 | |
| cellular component assembly | GO:0022607 | 360 | 0.061 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.059 | Yeast |
| regulation of transcription dna templated | GO:0006355 | 374 | 0.057 | Yeast |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.057 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.054 | Human Yeast Fly |
| macromolecular complex assembly | GO:0065003 | 273 | 0.054 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.053 | Yeast |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.052 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.051 | |
| cellular response to organonitrogen compound | GO:0071417 | 197 | 0.050 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.050 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.049 | |
| single organism carbohydrate metabolic process | GO:0044723 | 118 | 0.049 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.047 | Yeast |
| regulation of cellular component organization | GO:0051128 | 368 | 0.047 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.046 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.046 | |
| tissue development | GO:0009888 | 252 | 0.046 | |
| protein phosphorylation | GO:0006468 | 345 | 0.045 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.045 | |
| transcription dna templated | GO:0006351 | 377 | 0.042 | Yeast |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.042 | |
| carbohydrate metabolic process | GO:0005975 | 130 | 0.041 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 252 | 0.039 | Yeast |
| monosaccharide metabolic process | GO:0005996 | 61 | 0.039 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.039 | Fly |
| apoptotic process | GO:0006915 | 381 | 0.038 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.038 | Yeast |
| positive regulation of rna metabolic process | GO:0051254 | 203 | 0.038 | |
| anatomical structure morphogenesis | GO:0009653 | 298 | 0.037 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.037 | |
| nucleocytoplasmic transport | GO:0006913 | 48 | 0.037 | Human Yeast Fly |
| intracellular signal transduction | GO:0035556 | 314 | 0.036 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 161 | 0.035 | Yeast |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 234 | 0.035 | |
| aging | GO:0007568 | 241 | 0.034 | |
| positive regulation of programmed cell death | GO:0043068 | 157 | 0.033 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.033 | |
| regulation of multicellular organismal development | GO:2000026 | 376 | 0.033 | |
| negative regulation of transcription dna templated | GO:0045892 | 116 | 0.032 | Yeast |
| positive regulation of transcription dna templated | GO:0045893 | 197 | 0.032 | |
| negative regulation of developmental process | GO:0051093 | 125 | 0.032 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.030 | |
| regulation of programmed cell death | GO:0043067 | 341 | 0.030 | |
| programmed cell death | GO:0012501 | 392 | 0.030 | |
| rna localization | GO:0006403 | 4 | 0.030 | Human Yeast Fly |
| positive regulation of signal transduction | GO:0009967 | 175 | 0.030 | |
| macromolecule localization | GO:0033036 | 252 | 0.029 | Human Yeast Fly |
| spindle organization | GO:0007051 | 2 | 0.029 | Fly |
| protein oligomerization | GO:0051259 | 191 | 0.029 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 75 | 0.029 | |
| protein complex assembly | GO:0006461 | 263 | 0.028 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.028 | |
| nucleic acid transport | GO:0050657 | 3 | 0.028 | Human Yeast Fly |
| regulation of cell differentiation | GO:0045595 | 320 | 0.027 | |
| regulation of cell proliferation | GO:0042127 | 359 | 0.027 | |
| cellular response to endogenous stimulus | GO:0071495 | 377 | 0.026 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 197 | 0.026 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 153 | 0.026 | Yeast |
| negative regulation of rna biosynthetic process | GO:1902679 | 118 | 0.026 | Yeast |
| peptidyl tyrosine phosphorylation | GO:0018108 | 72 | 0.025 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.025 | |
| regulation of immune system process | GO:0002682 | 123 | 0.025 | |
| neuron differentiation | GO:0030182 | 368 | 0.025 | |
| immune system process | GO:0002376 | 204 | 0.024 | |
| chemical homeostasis | GO:0048878 | 292 | 0.024 | |
| central nervous system development | GO:0007417 | 311 | 0.024 | |
| catabolic process | GO:0009056 | 351 | 0.024 | Yeast |
| cellular macromolecular complex assembly | GO:0034622 | 58 | 0.023 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.023 | Yeast |
| cell cycle checkpoint | GO:0000075 | 2 | 0.023 | |
| regulation of viral transcription | GO:0046782 | 2 | 0.023 | |
| regulation of anatomical structure size | GO:0090066 | 135 | 0.023 | |
| eye development | GO:0001654 | 50 | 0.022 | |
| negative regulation of rna metabolic process | GO:0051253 | 123 | 0.022 | Yeast |
| actin nucleation | GO:0045010 | 2 | 0.022 | |
| growth | GO:0040007 | 165 | 0.021 | |
| cellular response to external stimulus | GO:0071496 | 118 | 0.021 | |
| cellular response to nutrient levels | GO:0031669 | 60 | 0.021 | |
| localization of cell | GO:0051674 | 202 | 0.021 | |
| positive regulation of cell death | GO:0010942 | 184 | 0.021 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 167 | 0.020 | |
| immune response | GO:0006955 | 104 | 0.020 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.020 | |
| response to nutrient levels | GO:0031667 | 370 | 0.020 | |
| regulation of phosphorylation | GO:0042325 | 248 | 0.019 | |
| cellular response to tumor necrosis factor | GO:0071356 | 46 | 0.019 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.019 | |
| nucleic acid templated transcription | GO:0097659 | 379 | 0.019 | Yeast |
| cellular response to cytokine stimulus | GO:0071345 | 127 | 0.019 | |
| head development | GO:0060322 | 247 | 0.019 | |
| neuron projection development | GO:0031175 | 273 | 0.019 | |
| carbohydrate biosynthetic process | GO:0016051 | 42 | 0.018 | |
| single organism biosynthetic process | GO:0044711 | 342 | 0.018 | |
| nuclear transport | GO:0051169 | 49 | 0.018 | Human Yeast Fly |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.018 | |
| response to growth factor | GO:0070848 | 189 | 0.018 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.018 | |
| regulation of cell development | GO:0060284 | 263 | 0.018 | |
| cell cycle | GO:0007049 | 101 | 0.018 | Fly |
| cell activation | GO:0001775 | 97 | 0.018 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.018 | Yeast |
| cellular lipid metabolic process | GO:0044255 | 208 | 0.018 | |
| response to nutrient | GO:0007584 | 248 | 0.017 | |
| negative regulation of cell communication | GO:0010648 | 158 | 0.017 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.017 | |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.017 | |
| cellular carbohydrate metabolic process | GO:0044262 | 72 | 0.017 | |
| brain development | GO:0007420 | 247 | 0.017 | |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.017 | Yeast |
| negative regulation of cell proliferation | GO:0008285 | 119 | 0.017 | |
| negative regulation of signaling | GO:0023057 | 157 | 0.017 | |
| reproduction | GO:0000003 | 245 | 0.016 | |
| peptidyl tyrosine modification | GO:0018212 | 72 | 0.016 | |
| cellular response to stress | GO:0033554 | 269 | 0.016 | Yeast |
| negative regulation of gene expression | GO:0010629 | 199 | 0.016 | Yeast |
| negative regulation of response to stimulus | GO:0048585 | 155 | 0.015 | |
| glucose metabolic process | GO:0006006 | 52 | 0.015 | |
| organelle organization | GO:0006996 | 266 | 0.015 | Fly |
| response to decreased oxygen levels | GO:0036293 | 237 | 0.015 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 46 | 0.015 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 148 | 0.015 | Yeast |
| negative regulation of protein metabolic process | GO:0051248 | 114 | 0.015 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.015 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.014 | |
| lipid storage | GO:0019915 | 1 | 0.014 | |
| positive regulation of cell differentiation | GO:0045597 | 217 | 0.014 | |
| cellular response to lipid | GO:0071396 | 201 | 0.014 | |
| tube development | GO:0035295 | 89 | 0.014 | |
| cardiovascular system development | GO:0072358 | 134 | 0.014 | |
| hexose metabolic process | GO:0019318 | 58 | 0.014 | |
| regulation of cellular component biogenesis | GO:0044087 | 86 | 0.014 | |
| glucan metabolic process | GO:0044042 | 23 | 0.014 | |
| nucleoside phosphate metabolic process | GO:0006753 | 283 | 0.014 | Yeast |
| single organism reproductive process | GO:0044702 | 297 | 0.014 | |
| reproductive process | GO:0022414 | 372 | 0.014 | |
| glycogen metabolic process | GO:0005977 | 23 | 0.014 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.014 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.014 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.014 | Yeast |
| chromatin assembly or disassembly | GO:0006333 | 1 | 0.013 | |
| oxidation reduction process | GO:0055114 | 304 | 0.013 | |
| negative regulation of cell differentiation | GO:0045596 | 99 | 0.013 | |
| circulatory system development | GO:0072359 | 134 | 0.013 | |
| carbohydrate catabolic process | GO:0016052 | 40 | 0.013 | |
| developmental growth | GO:0048589 | 100 | 0.013 | |
| negative regulation of cellular amine metabolic process | GO:0033239 | 3 | 0.013 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 141 | 0.013 | Yeast |
| neuron development | GO:0048666 | 286 | 0.013 | |
| g protein coupled receptor signaling pathway | GO:0007186 | 242 | 0.013 | |
| sensory organ development | GO:0007423 | 74 | 0.013 | |
| inorganic ion transmembrane transport | GO:0098660 | 229 | 0.013 | |
| spermatogenesis | GO:0007283 | 99 | 0.012 | |
| response to peptide | GO:1901652 | 292 | 0.012 | |
| spinal cord development | GO:0021510 | 27 | 0.012 | |
| response to inorganic substance | GO:0010035 | 377 | 0.012 | |
| positive regulation of apoptotic process | GO:0043065 | 154 | 0.012 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 55 | 0.012 | |
| cellular homeostasis | GO:0019725 | 252 | 0.012 | |
| mitotic spindle organization | GO:0007052 | 2 | 0.012 | Fly |
| purine containing compound metabolic process | GO:0072521 | 253 | 0.012 | Yeast |
| regulation of translation | GO:0006417 | 27 | 0.012 | |
| carboxylic acid biosynthetic process | GO:0046394 | 83 | 0.012 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.011 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 3 | 0.011 | |
| regulation of apoptotic process | GO:0042981 | 335 | 0.011 | |
| cytoskeleton organization | GO:0007010 | 111 | 0.011 | Fly |
| regulation of protein complex assembly | GO:0043254 | 33 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 179 | 0.011 | Yeast |
| positive regulation of intracellular signal transduction | GO:1902533 | 138 | 0.011 | |
| peptidyl amino acid modification | GO:0018193 | 126 | 0.011 | |
| generation of precursor metabolites and energy | GO:0006091 | 62 | 0.011 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 41 | 0.011 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 39 | 0.011 | |
| regulation of protein modification process | GO:0031399 | 194 | 0.011 | |
| epithelium development | GO:0060429 | 96 | 0.011 | |
| ras protein signal transduction | GO:0007265 | 29 | 0.011 | |
| cellular response to peptide | GO:1901653 | 133 | 0.011 | |
| cell projection organization | GO:0030030 | 302 | 0.011 | |
| regulation of cell migration | GO:0030334 | 128 | 0.011 | |
| regulation of homeostatic process | GO:0032844 | 101 | 0.010 | |
| organophosphate metabolic process | GO:0019637 | 370 | 0.010 | Yeast |
| small gtpase mediated signal transduction | GO:0007264 | 36 | 0.010 | |
| microtubule organizing center organization | GO:0031023 | 1 | 0.010 | |
| regulation of cellular catabolic process | GO:0031329 | 101 | 0.010 | |
| regulation of nucleotide metabolic process | GO:0006140 | 117 | 0.010 | |
| dna metabolic process | GO:0006259 | 96 | 0.010 | Yeast |
| positive regulation of protein phosphorylation | GO:0001934 | 135 | 0.010 | |
| organophosphate biosynthetic process | GO:0090407 | 143 | 0.010 | |
| response to radiation | GO:0009314 | 137 | 0.010 | |
| cellular response to abiotic stimulus | GO:0071214 | 85 | 0.010 | |
| purine nucleotide biosynthetic process | GO:0006164 | 83 | 0.010 | |
| regulation of retinal cell programmed cell death | GO:0046668 | 1 | 0.010 | |
| glucan biosynthetic process | GO:0009250 | 15 | 0.010 | |
