| oxoacid metabolic process | GO:0043436 | 290 | 0.074 | Yeast |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.063 | Yeast |
| organic acid metabolic process | GO:0006082 | 292 | 0.062 | Yeast |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.061 | |
| rna metabolic process | GO:0016070 | 406 | 0.056 | Yeast |
| catabolic process | GO:0009056 | 351 | 0.054 | |
| protein complex assembly | GO:0006461 | 263 | 0.050 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 252 | 0.049 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.049 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.048 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.046 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.045 | |
| amine metabolic process | GO:0009308 | 38 | 0.044 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.040 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.040 | |
| nucleic acid templated transcription | GO:0097659 | 379 | 0.037 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.035 | |
| single organism catabolic process | GO:0044712 | 283 | 0.034 | |
| lipid metabolic process | GO:0006629 | 283 | 0.033 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.033 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.033 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.030 | |
| cellular catabolic process | GO:0044248 | 295 | 0.029 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.029 | |
| protein phosphorylation | GO:0006468 | 345 | 0.028 | |
| oxidation reduction process | GO:0055114 | 304 | 0.028 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.027 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.027 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.027 | |
| cellular component assembly | GO:0022607 | 360 | 0.027 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.027 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.026 | Yeast |
| regulation of transcription dna templated | GO:0006355 | 374 | 0.026 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.026 | |
| regulation of membrane potential | GO:0042391 | 110 | 0.025 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.025 | |
| intracellular transport | GO:0046907 | 185 | 0.024 | |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.024 | |
| response to inorganic substance | GO:0010035 | 377 | 0.024 | |
| positive regulation of transcription dna templated | GO:0045893 | 197 | 0.024 | |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.023 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.023 | |
| regulation of protein phosphorylation | GO:0001932 | 183 | 0.023 | |
| transcription dna templated | GO:0006351 | 377 | 0.023 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.023 | |
| reproductive process | GO:0022414 | 372 | 0.023 | |
| single organism biosynthetic process | GO:0044711 | 342 | 0.022 | Yeast |
| cell projection organization | GO:0030030 | 302 | 0.022 | |
| apoptotic process | GO:0006915 | 381 | 0.022 | |
| cellular macromolecule localization | GO:0070727 | 122 | 0.022 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.022 | |
| defense response | GO:0006952 | 194 | 0.022 | |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.022 | |
| regulation of signal transduction | GO:0009966 | 318 | 0.022 | |
| organic cyclic compound catabolic process | GO:1901361 | 175 | 0.022 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.021 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 197 | 0.021 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 197 | 0.021 | |
| heart morphogenesis | GO:0003007 | 3 | 0.021 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 1 | 0.021 | |
| positive regulation of signaling | GO:0023056 | 270 | 0.021 | |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.021 | |
| regulation of catabolic process | GO:0009894 | 113 | 0.021 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.020 | |
| multicellular organismal reproductive process | GO:0048609 | 233 | 0.020 | |
| protein oligomerization | GO:0051259 | 191 | 0.020 | |
| positive regulation of rna metabolic process | GO:0051254 | 203 | 0.020 | |
| regulation of protein modification process | GO:0031399 | 194 | 0.020 | |
| nucleoside phosphate metabolic process | GO:0006753 | 283 | 0.019 | |
| response to nutrient levels | GO:0031667 | 370 | 0.019 | |
| central nervous system development | GO:0007417 | 311 | 0.019 | |
| single organism reproductive process | GO:0044702 | 297 | 0.019 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.019 | |
| response to decreased oxygen levels | GO:0036293 | 237 | 0.019 | |
| carbohydrate derivative metabolic process | GO:1901135 | 346 | 0.019 | |
| regulation of apoptotic process | GO:0042981 | 335 | 0.019 | |
| programmed cell death | GO:0012501 | 392 | 0.019 | |
| axis specification | GO:0009798 | 4 | 0.019 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.018 | |
| single organism carbohydrate metabolic process | GO:0044723 | 118 | 0.018 | |
| macromolecule localization | GO:0033036 | 252 | 0.018 | |
| multicellular organism reproduction | GO:0032504 | 233 | 0.018 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 234 | 0.018 | |
| intracellular signal transduction | GO:0035556 | 314 | 0.018 | |
| lipid biosynthetic process | GO:0008610 | 128 | 0.018 | |
| response to acid chemical | GO:0001101 | 222 | 0.018 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.017 | |
| regulation of cell differentiation | GO:0045595 | 320 | 0.017 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.017 | |
| response to ethanol | GO:0045471 | 162 | 0.017 | |
| regulation of cellular localization | GO:0060341 | 263 | 0.017 | |
| neuron differentiation | GO:0030182 | 368 | 0.017 | |
| positive regulation of protein modification process | GO:0031401 | 142 | 0.017 | |
| neuron projection development | GO:0031175 | 273 | 0.017 | |
| positive regulation of cell proliferation | GO:0008284 | 249 | 0.017 | |
| positive regulation of gene expression | GO:0010628 | 244 | 0.016 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.016 | |
| head development | GO:0060322 | 247 | 0.016 | |
| regulation of molecular function | GO:0065009 | 398 | 0.016 | |
| regulation of cell proliferation | GO:0042127 | 359 | 0.016 | |
| regulation of system process | GO:0044057 | 208 | 0.016 | |
| cardiovascular system development | GO:0072358 | 134 | 0.016 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.016 | |
| cellular response to stress | GO:0033554 | 269 | 0.016 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 163 | 0.015 | |
| heterocycle catabolic process | GO:0046700 | 167 | 0.015 | |
| proteolysis | GO:0006508 | 175 | 0.015 | |
| gland development | GO:0048732 | 155 | 0.015 | |
| response to metal ion | GO:0010038 | 253 | 0.015 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.015 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.015 | |
| regulation of cell development | GO:0060284 | 263 | 0.015 | |
| single organism behavior | GO:0044708 | 130 | 0.015 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.015 | |
| positive regulation of signal transduction | GO:0009967 | 175 | 0.015 | |
| regulation of phosphorylation | GO:0042325 | 248 | 0.015 | |
| anatomical structure morphogenesis | GO:0009653 | 298 | 0.015 | |
| nucleobase containing compound catabolic process | GO:0034655 | 152 | 0.015 | |
| positive regulation of cell communication | GO:0010647 | 271 | 0.015 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.015 | |
| neurological system process | GO:0050877 | 219 | 0.015 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.014 | |
| synaptic transmission | GO:0007268 | 235 | 0.014 | |
| response to oxygen levels | GO:0070482 | 265 | 0.014 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.014 | |
| negative regulation of transport | GO:0051051 | 136 | 0.014 | |
| positive regulation of protein metabolic process | GO:0051247 | 178 | 0.014 | |
| negative regulation of molecular function | GO:0044092 | 133 | 0.014 | |
| reproduction | GO:0000003 | 245 | 0.014 | |
| ribose phosphate metabolic process | GO:0019693 | 235 | 0.014 | |
| negative regulation of response to stimulus | GO:0048585 | 155 | 0.014 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 167 | 0.014 | |
| regulation of hormone secretion | GO:0046883 | 106 | 0.014 | |
| multi multicellular organism process | GO:0044706 | 138 | 0.014 | |
| positive regulation of protein phosphorylation | GO:0001934 | 135 | 0.014 | |
| regulation of neurogenesis | GO:0050767 | 247 | 0.013 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.013 | |
| cofactor metabolic process | GO:0051186 | 95 | 0.013 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 262 | 0.013 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.013 | |
| immune system process | GO:0002376 | 204 | 0.013 | |
| response to transition metal nanoparticle | GO:1990267 | 122 | 0.013 | |
| protein homooligomerization | GO:0051260 | 91 | 0.013 | |
| organophosphate metabolic process | GO:0019637 | 370 | 0.013 | |
| neuron development | GO:0048666 | 286 | 0.013 | |
| response to peptide | GO:1901652 | 292 | 0.013 | |
| cation transport | GO:0006812 | 382 | 0.013 | |
| small molecule catabolic process | GO:0044282 | 59 | 0.013 | |
| amide transport | GO:0042886 | 105 | 0.013 | |
| negative regulation of cell communication | GO:0010648 | 158 | 0.013 | |
| response to hypoxia | GO:0001666 | 231 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 253 | 0.013 | |
| regulation of neuron projection development | GO:0010975 | 161 | 0.013 | |
| anterior posterior pattern specification | GO:0009952 | 1 | 0.013 | |
| behavior | GO:0007610 | 205 | 0.013 | |
| negative regulation of protein metabolic process | GO:0051248 | 114 | 0.012 | |
| gamete generation | GO:0007276 | 124 | 0.012 | |
| cytoplasmic transport | GO:0016482 | 115 | 0.012 | |
| cellular lipid metabolic process | GO:0044255 | 208 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 264 | 0.012 | |
| aging | GO:0007568 | 241 | 0.012 | |
| establishment of protein localization | GO:0045184 | 141 | 0.012 | |
| response to nutrient | GO:0007584 | 248 | 0.012 | |
| organophosphate biosynthetic process | GO:0090407 | 143 | 0.012 | |
| ribonucleotide metabolic process | GO:0009259 | 231 | 0.012 | |
| response to growth factor | GO:0070848 | 189 | 0.012 | |
| regulation of programmed cell death | GO:0043067 | 341 | 0.012 | |
| negative regulation of multicellular organismal process | GO:0051241 | 203 | 0.012 | |
| aromatic compound catabolic process | GO:0019439 | 168 | 0.012 | |
| alcohol metabolic process | GO:0006066 | 77 | 0.012 | |
| ion transmembrane transport | GO:0034220 | 365 | 0.012 | |
| positive regulation of cell death | GO:0010942 | 184 | 0.012 | |
| embryonic pattern specification | GO:0009880 | 1 | 0.012 | |
| positive regulation of cell differentiation | GO:0045597 | 217 | 0.012 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 153 | 0.012 | |
| protein localization | GO:0008104 | 191 | 0.012 | |
| positive regulation of neuron differentiation | GO:0045666 | 126 | 0.012 | |
| negative regulation of apoptotic process | GO:0043066 | 181 | 0.012 | |
| rhythmic process | GO:0048511 | 156 | 0.012 | |
| peptidyl amino acid modification | GO:0018193 | 126 | 0.012 | |
| retinal metabolic process | GO:0042574 | 3 | 0.012 | |
| eye morphogenesis | GO:0048592 | 4 | 0.011 | |
| negative regulation of programmed cell death | GO:0043069 | 183 | 0.011 | |
| organelle organization | GO:0006996 | 266 | 0.011 | Yeast |
| organic acid catabolic process | GO:0016054 | 49 | 0.011 | |
| regulation of hormone levels | GO:0010817 | 187 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 179 | 0.011 | |
| response to peptide hormone | GO:0043434 | 278 | 0.011 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 138 | 0.011 | |
| cation homeostasis | GO:0055080 | 195 | 0.011 | |
| inflammatory response | GO:0006954 | 150 | 0.011 | |
| regulation of kinase activity | GO:0043549 | 117 | 0.011 | |
| negative regulation of gene expression | GO:0010629 | 199 | 0.011 | |
| cellular protein localization | GO:0034613 | 122 | 0.011 | |
| single organism cellular localization | GO:1902580 | 102 | 0.011 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.011 | |
| brain development | GO:0007420 | 247 | 0.011 | |
| carbohydrate derivative catabolic process | GO:1901136 | 147 | 0.011 | |
| positive regulation of transport | GO:0051050 | 245 | 0.011 | |
| spermatogenesis | GO:0007283 | 99 | 0.011 | |
| ribonucleoside metabolic process | GO:0009119 | 174 | 0.011 | |
| glycosyl compound metabolic process | GO:1901657 | 182 | 0.011 | |
| cell adhesion | GO:0007155 | 110 | 0.011 | |
| blood circulation | GO:0008015 | 183 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 179 | 0.011 | |
| protein transport | GO:0015031 | 132 | 0.011 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.011 | |
| response to carbohydrate | GO:0009743 | 183 | 0.011 | |
| homeostatic process | GO:0042592 | 331 | 0.011 | |
| reactive nitrogen species metabolic process | GO:2001057 | 1 | 0.011 | |
| reproductive structure development | GO:0048608 | 128 | 0.010 | |
| circulatory system development | GO:0072359 | 134 | 0.010 | |
| carbohydrate metabolic process | GO:0005975 | 130 | 0.010 | |
| organic hydroxy compound metabolic process | GO:1901615 | 115 | 0.010 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.010 | |
| cellular homeostasis | GO:0019725 | 252 | 0.010 | |
| metal ion homeostasis | GO:0055065 | 186 | 0.010 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 80 | 0.010 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 148 | 0.010 | |
| negative regulation of phosphate metabolic process | GO:0045936 | 80 | 0.010 | |
| coenzyme metabolic process | GO:0006732 | 86 | 0.010 | |
| organic anion transport | GO:0015711 | 132 | 0.010 | |
