| modification dependent macromolecule catabolic process | GO:0043632 | 14 | 0.262 | Yeast |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 7 | 0.232 | Yeast |
| mitotic spindle organization | GO:0007052 | 2 | 0.197 | |
| proteolysis | GO:0006508 | 175 | 0.166 | Yeast |
| protein complex assembly | GO:0006461 | 263 | 0.114 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.107 | Yeast |
| proteasomal protein catabolic process | GO:0010498 | 8 | 0.106 | Yeast |
| spliceosomal complex assembly | GO:0000245 | 2 | 0.094 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.090 | |
| aging | GO:0007568 | 241 | 0.088 | Worm |
| rna metabolic process | GO:0016070 | 406 | 0.087 | |
| negative regulation of striated muscle cell apoptotic process | GO:0010664 | 8 | 0.084 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 141 | 0.082 | |
| cellular catabolic process | GO:0044248 | 295 | 0.081 | Yeast |
| ribonucleotide metabolic process | GO:0009259 | 231 | 0.073 | |
| transcription dna templated | GO:0006351 | 377 | 0.072 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.070 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 19 | 0.069 | Yeast |
| cellular response to stress | GO:0033554 | 269 | 0.068 | |
| catabolic process | GO:0009056 | 351 | 0.065 | Yeast |
| ubiquitin dependent protein catabolic process | GO:0006511 | 14 | 0.061 | Yeast |
| purine containing compound metabolic process | GO:0072521 | 253 | 0.058 | |
| regulation of apoptotic process | GO:0042981 | 335 | 0.058 | |
| organelle organization | GO:0006996 | 266 | 0.054 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.054 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 140 | 0.053 | |
| single organism organelle organization | GO:1902589 | 180 | 0.051 | |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.051 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.051 | |
| nucleoside phosphate metabolic process | GO:0006753 | 283 | 0.045 | |
| protein catabolic process | GO:0030163 | 30 | 0.045 | Yeast |
| regulation of transcription dna templated | GO:0006355 | 374 | 0.044 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.041 | |
| spindle organization | GO:0007051 | 2 | 0.040 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.039 | |
| positive regulation of peptidyl threonine phosphorylation | GO:0010800 | 1 | 0.039 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.037 | |
| regulation of molecular function | GO:0065009 | 398 | 0.037 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.036 | |
| response to oxidative stress | GO:0006979 | 186 | 0.036 | |
| nucleic acid templated transcription | GO:0097659 | 379 | 0.035 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.035 | |
| negative regulation of protein modification by small protein conjugation or removal | GO:1903321 | 4 | 0.034 | |
| purine nucleoside metabolic process | GO:0042278 | 169 | 0.033 | |
| single organism catabolic process | GO:0044712 | 283 | 0.032 | |
| response to external biotic stimulus | GO:0043207 | 221 | 0.032 | |
| programmed cell death | GO:0012501 | 392 | 0.032 | |
| synaptic transmission | GO:0007268 | 235 | 0.031 | |
| endocytic recycling | GO:0032456 | 2 | 0.030 | |
| carbohydrate derivative metabolic process | GO:1901135 | 346 | 0.029 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 252 | 0.029 | |
| apoptotic process | GO:0006915 | 381 | 0.029 | |
| cellular component assembly | GO:0022607 | 360 | 0.028 | |
| nucleoside metabolic process | GO:0009116 | 179 | 0.027 | |
| response to carbohydrate | GO:0009743 | 183 | 0.027 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.027 | |
| triglyceride homeostasis | GO:0070328 | 2 | 0.027 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 141 | 0.027 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 197 | 0.027 | |
| purine nucleotide metabolic process | GO:0006163 | 229 | 0.026 | |
| regulation of immune system process | GO:0002682 | 123 | 0.026 | |
| regulation of cellular component organization | GO:0051128 | 368 | 0.026 | |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.026 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.025 | |
| histone h3 deacetylation | GO:0070932 | 6 | 0.025 | |
| response to other organism | GO:0051707 | 220 | 0.024 | |
| secretion | GO:0046903 | 307 | 0.023 | |
| reproductive system development | GO:0061458 | 128 | 0.023 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 197 | 0.023 | |
| cellular iron ion homeostasis | GO:0006879 | 2 | 0.022 | |
| reproduction | GO:0000003 | 245 | 0.022 | Worm |
| negative regulation of cell communication | GO:0010648 | 158 | 0.021 | |
| reproductive structure development | GO:0048608 | 128 | 0.020 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.020 | |
| purine ribonucleoside metabolic process | GO:0046128 | 168 | 0.020 | |
| response to ketone | GO:1901654 | 182 | 0.020 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.020 | |
| intracellular lipid transport | GO:0032365 | 1 | 0.020 | |
| positive regulation of gene expression | GO:0010628 | 244 | 0.020 | |
| locomotion | GO:0040011 | 237 | 0.020 | Worm |
| positive regulation of nuclear division | GO:0051785 | 7 | 0.020 | |
| acylglycerol homeostasis | GO:0055090 | 2 | 0.019 | |
| modification dependent protein catabolic process | GO:0019941 | 14 | 0.019 | Yeast |
| regulation of signal transduction | GO:0009966 | 318 | 0.019 | |
| cellular protein catabolic process | GO:0044257 | 19 | 0.018 | Yeast |
| regulation of neuron death | GO:1901214 | 115 | 0.018 | |
| cellular macromolecule catabolic process | GO:0044265 | 29 | 0.018 | Yeast |
| negative regulation of programmed cell death | GO:0043069 | 183 | 0.018 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.017 | |
| purine ribonucleotide metabolic process | GO:0009150 | 227 | 0.017 | |
| microtubule cytoskeleton organization | GO:0000226 | 25 | 0.017 | |
| positive regulation of ion transport | GO:0043270 | 94 | 0.017 | |
| positive regulation of transcription dna templated | GO:0045893 | 197 | 0.016 | |
| macromolecule catabolic process | GO:0009057 | 58 | 0.016 | Yeast |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.016 | |
| cation transport | GO:0006812 | 382 | 0.016 | |
| positive regulation of rna metabolic process | GO:0051254 | 203 | 0.016 | |
| development of primary sexual characteristics | GO:0045137 | 107 | 0.016 | |
| positive regulation of cellular component organization | GO:0051130 | 200 | 0.016 | |
| mitotic cell cycle | GO:0000278 | 49 | 0.016 | |
| negative regulation of glucose import | GO:0046325 | 4 | 0.016 | |
| negative regulation of autophagy | GO:0010507 | 1 | 0.015 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 93 | 0.015 | |
| intracellular transport | GO:0046907 | 185 | 0.015 | |
| regulation of insulin secretion involved in cellular response to glucose stimulus | GO:0061178 | 14 | 0.015 | |
| protein autoubiquitination | GO:0051865 | 2 | 0.015 | |
| negative regulation of response to stimulus | GO:0048585 | 155 | 0.015 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.014 | |
| regulation of programmed cell death | GO:0043067 | 341 | 0.014 | |
| inflammatory response to antigenic stimulus | GO:0002437 | 18 | 0.014 | |
| embryo development | GO:0009790 | 49 | 0.014 | Worm |
| ovarian follicle atresia | GO:0001552 | 3 | 0.014 | |
| negative regulation of immune system process | GO:0002683 | 39 | 0.014 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.013 | |
| homeostatic process | GO:0042592 | 331 | 0.013 | |
| regulation of cell aging | GO:0090342 | 1 | 0.013 | |
| negative regulation of molecular function | GO:0044092 | 133 | 0.013 | |
| positive regulation of phosphatase activity | GO:0010922 | 7 | 0.013 | |
| cytoplasmic transport | GO:0016482 | 115 | 0.012 | |
| insulin secretion involved in cellular response to glucose stimulus | GO:0035773 | 14 | 0.012 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.012 | |
| vesicle mediated transport | GO:0016192 | 181 | 0.012 | |
| ribonucleoside metabolic process | GO:0009119 | 174 | 0.012 | |
| cellular response to oxidative stress | GO:0034599 | 76 | 0.012 | |
| response to prostaglandin f | GO:0034696 | 4 | 0.012 | |
| response to wounding | GO:0009611 | 254 | 0.012 | |
| atp metabolic process | GO:0046034 | 72 | 0.012 | |
| cartilage condensation | GO:0001502 | 2 | 0.012 | |
| hematopoietic progenitor cell differentiation | GO:0002244 | 2 | 0.012 | |
| regulation of photoreceptor cell differentiation | GO:0046532 | 3 | 0.012 | |
| dorsal ventral pattern formation | GO:0009953 | 4 | 0.012 | |
| response to peptide hormone | GO:0043434 | 278 | 0.012 | |
| sex differentiation | GO:0007548 | 113 | 0.011 | |
| response to copper ion | GO:0046688 | 27 | 0.011 | |
| negative regulation of protein complex assembly | GO:0031333 | 11 | 0.011 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.011 | |
| intracellular signal transduction | GO:0035556 | 314 | 0.011 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.011 | |
| peptidyl cysteine modification | GO:0018198 | 2 | 0.011 | |
| tyrosine phosphorylation of stat5 protein | GO:0042506 | 3 | 0.011 | |
| negative regulation of defense response to virus | GO:0050687 | 2 | 0.011 | |
| organophosphate metabolic process | GO:0019637 | 370 | 0.011 | |
| negative regulation of myeloid cell differentiation | GO:0045638 | 3 | 0.011 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.011 | |
| rna transport | GO:0050658 | 3 | 0.011 | |
| response to yeast | GO:0001878 | 3 | 0.011 | |
| chemical homeostasis | GO:0048878 | 292 | 0.011 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.011 | |
| ion homeostasis | GO:0050801 | 212 | 0.010 | |
| negative regulation of insulin secretion involved in cellular response to glucose stimulus | GO:0061179 | 6 | 0.010 | |
| positive regulation of cell proliferation | GO:0008284 | 249 | 0.010 | |
| body fluid secretion | GO:0007589 | 41 | 0.010 | |
| cellular homeostasis | GO:0019725 | 252 | 0.010 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.010 | |
