| regulation of transcription dna templated | GO:0006355 | 374 | 0.137 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.135 | |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.131 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.124 | |
| transcription dna templated | GO:0006351 | 377 | 0.122 | |
| rna metabolic process | GO:0016070 | 406 | 0.121 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 252 | 0.106 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 161 | 0.096 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.089 | |
| negative regulation of rna metabolic process | GO:0051253 | 123 | 0.089 | |
| nucleic acid templated transcription | GO:0097659 | 379 | 0.083 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.080 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 234 | 0.079 | |
| rhythmic process | GO:0048511 | 156 | 0.072 | |
| cellular catabolic process | GO:0044248 | 295 | 0.069 | |
| neuron differentiation | GO:0030182 | 368 | 0.068 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.065 | |
| regulation of neurogenesis | GO:0050767 | 247 | 0.065 | |
| cellular response to endogenous stimulus | GO:0071495 | 377 | 0.065 | |
| single organism catabolic process | GO:0044712 | 283 | 0.060 | |
| regulation of cell proliferation | GO:0042127 | 359 | 0.060 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 117 | 0.057 | |
| regulation of cell morphogenesis | GO:0022604 | 77 | 0.055 | |
| organelle organization | GO:0006996 | 266 | 0.052 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 161 | 0.051 | |
| regulation of neuron differentiation | GO:0045664 | 208 | 0.051 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.050 | |
| positive regulation of cell development | GO:0010720 | 176 | 0.048 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.047 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.047 | |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.046 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.045 | |
| single organism biosynthetic process | GO:0044711 | 342 | 0.045 | |
| regulation of anatomical structure morphogenesis | GO:0022603 | 141 | 0.045 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.045 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.044 | |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.043 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 118 | 0.042 | |
| organophosphate metabolic process | GO:0019637 | 370 | 0.041 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.041 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.039 | |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.039 | |
| reproductive process | GO:0022414 | 372 | 0.039 | |
| cellular response to growth factor stimulus | GO:0071363 | 162 | 0.038 | |
| response to growth factor | GO:0070848 | 189 | 0.037 | |
| regulation of programmed cell death | GO:0043067 | 341 | 0.037 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.037 | |
| protein phosphorylation | GO:0006468 | 345 | 0.036 | |
| negative regulation of transcription dna templated | GO:0045892 | 116 | 0.036 | |
| carbohydrate derivative metabolic process | GO:1901135 | 346 | 0.036 | |
| cell projection organization | GO:0030030 | 302 | 0.035 | |
| positive regulation of transforming growth factor beta3 production | GO:0032916 | 2 | 0.035 | |
| signal transduction by phosphorylation | GO:0023014 | 144 | 0.034 | |
| positive regulation of rna metabolic process | GO:0051254 | 203 | 0.033 | |
| single organism reproductive process | GO:0044702 | 297 | 0.033 | |
| catabolic process | GO:0009056 | 351 | 0.033 | |
| neuron development | GO:0048666 | 286 | 0.033 | |
| negative regulation of gene expression | GO:0010629 | 199 | 0.033 | |
| response to nutrient levels | GO:0031667 | 370 | 0.033 | |
| glycosyl compound metabolic process | GO:1901657 | 182 | 0.032 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 148 | 0.032 | |
| programmed cell death | GO:0012501 | 392 | 0.032 | |
| response to cytokine | GO:0034097 | 215 | 0.031 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 197 | 0.031 | |
| positive regulation of transcription dna templated | GO:0045893 | 197 | 0.031 | |
| regulation of multicellular organismal development | GO:2000026 | 376 | 0.031 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.029 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.029 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.029 | |
| positive regulation of gene expression | GO:0010628 | 244 | 0.029 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.029 | |
| motor neuron axon guidance | GO:0008045 | 1 | 0.028 | |
| response to corticosteroid | GO:0031960 | 235 | 0.028 | |
| positive regulation of protein metabolic process | GO:0051247 | 178 | 0.027 | |
| response to estrogen | GO:0043627 | 232 | 0.027 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.027 | |
| intracellular signal transduction | GO:0035556 | 314 | 0.027 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 141 | 0.026 | |
| anterior posterior pattern specification | GO:0009952 | 1 | 0.026 | |
| response to ethanol | GO:0045471 | 162 | 0.026 | |
| anion transport | GO:0006820 | 178 | 0.026 | |
| positive regulation of cell differentiation | GO:0045597 | 217 | 0.026 | |
| regulation of cell development | GO:0060284 | 263 | 0.026 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.025 | |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.025 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.025 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 153 | 0.025 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.024 | |
| purine containing compound metabolic process | GO:0072521 | 253 | 0.024 | |
| developmental growth | GO:0048589 | 100 | 0.024 | |
| regulation of nervous system development | GO:0051960 | 264 | 0.023 | |
| positive regulation of neuron differentiation | GO:0045666 | 126 | 0.023 | |
| chromosome segregation | GO:0007059 | 2 | 0.023 | |
| gastrulation | GO:0007369 | 2 | 0.023 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.023 | |
| ribonucleotide metabolic process | GO:0009259 | 231 | 0.023 | |
| ribose phosphate metabolic process | GO:0019693 | 235 | 0.022 | |
| biological adhesion | GO:0022610 | 110 | 0.022 | |
| transforming growth factor beta3 production | GO:0032907 | 2 | 0.022 | |
| multicellular organism growth | GO:0035264 | 1 | 0.022 | |
| tissue development | GO:0009888 | 252 | 0.022 | |
| cell morphogenesis involved in differentiation | GO:0000904 | 119 | 0.022 | |
| ribonucleoside metabolic process | GO:0009119 | 174 | 0.022 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 167 | 0.022 | |
| response to nutrient | GO:0007584 | 248 | 0.022 | |
| protein complex assembly | GO:0006461 | 263 | 0.022 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 148 | 0.022 | |
| regulation of organelle organization | GO:0033043 | 80 | 0.022 | |
| protein transport | GO:0015031 | 132 | 0.022 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.021 | |
| alpha amino acid metabolic process | GO:1901605 | 71 | 0.021 | |
| hormone metabolic process | GO:0042445 | 69 | 0.021 | |
| ras protein signal transduction | GO:0007265 | 29 | 0.021 | |
| purine ribonucleoside metabolic process | GO:0046128 | 168 | 0.021 | |
| response to purine containing compound | GO:0014074 | 126 | 0.021 | |
| regulation of neuron projection development | GO:0010975 | 161 | 0.021 | |
| positive regulation of neurogenesis | GO:0050769 | 165 | 0.021 | |
| organophosphate biosynthetic process | GO:0090407 | 143 | 0.020 | |
| regulation of cellular component organization | GO:0051128 | 368 | 0.020 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 262 | 0.020 | |
| purine nucleotide metabolic process | GO:0006163 | 229 | 0.020 | |
| cellular response to cytokine stimulus | GO:0071345 | 127 | 0.020 | |
| ribonucleoside catabolic process | GO:0042454 | 126 | 0.020 | |
| positive regulation of cell proliferation | GO:0008284 | 249 | 0.020 | |
| response to glucocorticoid | GO:0051384 | 223 | 0.020 | |
| organic cyclic compound catabolic process | GO:1901361 | 175 | 0.020 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.020 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.020 | |
| regulation of protein phosphorylation | GO:0001932 | 183 | 0.020 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 124 | 0.020 | |
| regulation of lymphocyte migration | GO:2000401 | 1 | 0.020 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.020 | |
| nucleoside phosphate metabolic process | GO:0006753 | 283 | 0.020 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 163 | 0.019 | |
| ribonucleotide biosynthetic process | GO:0009260 | 85 | 0.019 | |
| purine ribonucleotide metabolic process | GO:0009150 | 227 | 0.019 | |
| female pregnancy | GO:0007565 | 122 | 0.019 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 197 | 0.019 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.019 | |
| regulation of cell differentiation | GO:0045595 | 320 | 0.019 | |
| axis specification | GO:0009798 | 4 | 0.019 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.019 | |
| nucleobase containing compound catabolic process | GO:0034655 | 152 | 0.019 | |
| regulation of secretion by cell | GO:1903530 | 208 | 0.019 | |
| regulation of cell morphogenesis involved in differentiation | GO:0010769 | 72 | 0.019 | |
| organonitrogen compound catabolic process | GO:1901565 | 179 | 0.019 | |
| secretion | GO:0046903 | 307 | 0.019 | |
| cellular component assembly | GO:0022607 | 360 | 0.018 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 144 | 0.018 | |
| response to transforming growth factor beta | GO:0071559 | 46 | 0.018 | |
| protein heterooligomerization | GO:0051291 | 89 | 0.018 | |
| single organism organelle organization | GO:1902589 | 180 | 0.018 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 75 | 0.018 | |
| heterocycle catabolic process | GO:0046700 | 167 | 0.017 | |
| central nervous system development | GO:0007417 | 311 | 0.017 | |
| purine ribonucleotide biosynthetic process | GO:0009152 | 81 | 0.017 | |
| positive regulation of cellular component organization | GO:0051130 | 200 | 0.017 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 141 | 0.017 | |
| positive regulation of protein modification process | GO:0031401 | 142 | 0.017 | |
| response to alkaloid | GO:0043279 | 132 | 0.017 | |
| response to hypoxia | GO:0001666 | 231 | 0.017 | |
| multicellular organism reproduction | GO:0032504 | 233 | 0.017 | |
| bmp signaling pathway | GO:0030509 | 4 | 0.017 | |
| cellular component morphogenesis | GO:0032989 | 155 | 0.017 | |
| nucleoside metabolic process | GO:0009116 | 179 | 0.017 | |
| nucleoside phosphate biosynthetic process | GO:1901293 | 102 | 0.017 | |
| circadian rhythm | GO:0007623 | 88 | 0.017 | |
| purine ribonucleoside catabolic process | GO:0046130 | 124 | 0.016 | |
| muscle structure development | GO:0061061 | 87 | 0.016 | |
| regulation of molecular function | GO:0065009 | 398 | 0.016 | |
| neuron projection development | GO:0031175 | 273 | 0.016 | |
| ovulation cycle | GO:0042698 | 67 | 0.016 | |
| embryonic pattern specification | GO:0009880 | 1 | 0.016 | |
| embryonic skeletal system development | GO:0048706 | 3 | 0.016 | |
| ribose phosphate biosynthetic process | GO:0046390 | 87 | 0.016 | |
| regulation of apoptotic process | GO:0042981 | 335 | 0.016 | |
| regulation of growth | GO:0040008 | 105 | 0.015 | |
| monocarboxylic acid metabolic process | GO:0032787 | 152 | 0.015 | |
| neurological system process | GO:0050877 | 219 | 0.015 | |
| cellular response to transforming growth factor beta stimulus | GO:0071560 | 41 | 0.015 | |
| amine metabolic process | GO:0009308 | 38 | 0.015 | |
| regulation of transforming growth factor beta3 production | GO:0032910 | 2 | 0.015 | |
| regulation of protein modification process | GO:0031399 | 194 | 0.015 | |
| reproduction | GO:0000003 | 245 | 0.015 | |
| embryonic axis specification | GO:0000578 | 1 | 0.015 | |
| response to wounding | GO:0009611 | 254 | 0.015 | |
| guanosine containing compound metabolic process | GO:1901068 | 74 | 0.015 | |
| regulation of cell projection organization | GO:0031344 | 175 | 0.015 | |
| purine ribonucleotide catabolic process | GO:0009154 | 136 | 0.015 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.014 | |
| cellular lipid metabolic process | GO:0044255 | 208 | 0.014 | |
| response to ketone | GO:1901654 | 182 | 0.014 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.014 | |
| protein oligomerization | GO:0051259 | 191 | 0.014 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.014 | |
| single organism carbohydrate catabolic process | GO:0044724 | 40 | 0.014 | |
| regulation of homeostatic process | GO:0032844 | 101 | 0.014 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.014 | |
| nucleobase biosynthetic process | GO:0046112 | 2 | 0.014 | |
| cell morphogenesis | GO:0000902 | 142 | 0.014 | |
| response to reactive oxygen species | GO:0000302 | 120 | 0.014 | |
| cell part morphogenesis | GO:0032990 | 123 | 0.014 | |
| regulation of phosphorylation | GO:0042325 | 248 | 0.014 | |
| cellular response to stress | GO:0033554 | 269 | 0.014 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 122 | 0.014 | |
| negative regulation of cell communication | GO:0010648 | 158 | 0.013 | |
| single organism behavior | GO:0044708 | 130 | 0.013 | |
| positive regulation of catabolic process | GO:0009896 | 78 | 0.013 | |
| regulation of bmp signaling pathway | GO:0030510 | 2 | 0.013 | |
| positive regulation of transcription initiation from rna polymerase ii promoter | GO:0060261 | 3 | 0.013 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 167 | 0.013 | |
| cellular response to tumor necrosis factor | GO:0071356 | 46 | 0.013 | |
| intestinal absorption | GO:0050892 | 3 | 0.013 | |
| regulation of catabolic process | GO:0009894 | 113 | 0.013 | |
| liver development | GO:0001889 | 90 | 0.013 | |
| purine nucleotide biosynthetic process | GO:0006164 | 83 | 0.012 | |
| cellular macromolecular complex assembly | GO:0034622 | 58 | 0.012 | |
| chemical homeostasis | GO:0048878 | 292 | 0.012 | |
| response to peptide hormone | GO:0043434 | 278 | 0.012 | |
| synaptic growth at neuromuscular junction | GO:0051124 | 1 | 0.012 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.012 | |
| purine containing compound biosynthetic process | GO:0072522 | 85 | 0.012 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 2 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.012 | |
| mapk cascade | GO:0000165 | 140 | 0.012 | |
| synaptic transmission | GO:0007268 | 235 | 0.012 | |
| lipid metabolic process | GO:0006629 | 283 | 0.012 | |
| regulation of mesenchymal cell proliferation | GO:0010464 | 4 | 0.012 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 4 | 0.012 | |
| tetrahydrofolate metabolic process | GO:0046653 | 9 | 0.012 | |
| regulation of exocytosis | GO:0017157 | 37 | 0.012 | |
| regulation of nucleotide metabolic process | GO:0006140 | 117 | 0.012 | |
| intracellular transport | GO:0046907 | 185 | 0.012 | |
| regulation of protein kinase activity | GO:0045859 | 105 | 0.011 | |
| cellular response to oxidative stress | GO:0034599 | 76 | 0.011 | |
| mitotic sister chromatid separation | GO:0051306 | 1 | 0.011 | |
| ribonucleotide catabolic process | GO:0009261 | 136 | 0.011 | |
| regulation of hormone levels | GO:0010817 | 187 | 0.011 | |
| response to organophosphorus | GO:0046683 | 102 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 106 | 0.011 | |
| regulation of metanephros development | GO:0072215 | 4 | 0.011 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 4 | 0.011 | |
| regulation of gtpase activity | GO:0043087 | 57 | 0.011 | |
| response to cocaine | GO:0042220 | 39 | 0.011 | |
| regulation of synaptic transmission | GO:0050804 | 141 | 0.011 | |
| pteridine containing compound metabolic process | GO:0042558 | 14 | 0.011 | |
| eye morphogenesis | GO:0048592 | 4 | 0.011 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 122 | 0.011 | |
| memory | GO:0007613 | 54 | 0.011 | |
| spindle organization | GO:0007051 | 2 | 0.011 | |
| positive regulation of mapk cascade | GO:0043410 | 92 | 0.011 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.010 | |
| cellular response to hormone stimulus | GO:0032870 | 247 | 0.010 | |
| positive regulation of protein kinase activity | GO:0045860 | 73 | 0.010 | |
| negative regulation of nervous system development | GO:0051961 | 79 | 0.010 | |
| formation of primary germ layer | GO:0001704 | 1 | 0.010 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.010 | |
| response to toxic substance | GO:0009636 | 133 | 0.010 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 3 | 0.010 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.010 | |
| brain development | GO:0007420 | 247 | 0.010 | |
