| organic acid metabolic process | GO:0006082 | 292 | 0.289 | |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.159 | |
| carboxylic acid catabolic process | GO:0046395 | 49 | 0.144 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.080 | |
| monocarboxylic acid metabolic process | GO:0032787 | 152 | 0.080 | |
| alpha amino acid metabolic process | GO:1901605 | 71 | 0.073 | |
| small molecule catabolic process | GO:0044282 | 59 | 0.064 | |
| catabolic process | GO:0009056 | 351 | 0.060 | |
| cellular amino acid catabolic process | GO:0009063 | 21 | 0.053 | |
| carbohydrate derivative metabolic process | GO:1901135 | 346 | 0.048 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.046 | |
| single organism catabolic process | GO:0044712 | 283 | 0.043 | |
| lipid metabolic process | GO:0006629 | 283 | 0.041 | |
| organic acid catabolic process | GO:0016054 | 49 | 0.037 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.036 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.033 | |
| fatty acid metabolic process | GO:0006631 | 99 | 0.031 | |
| response to nutrient levels | GO:0031667 | 370 | 0.030 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.030 | |
| response to acid chemical | GO:0001101 | 222 | 0.030 | |
| organonitrogen compound catabolic process | GO:1901565 | 179 | 0.029 | |
| coenzyme metabolic process | GO:0006732 | 86 | 0.029 | |
| alpha amino acid catabolic process | GO:1901606 | 20 | 0.028 | |
| cofactor metabolic process | GO:0051186 | 95 | 0.026 | |
| organic cyclic compound catabolic process | GO:1901361 | 175 | 0.026 | |
| nucleoside phosphate metabolic process | GO:0006753 | 283 | 0.026 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.026 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.025 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.023 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.023 | |
| retinal metabolic process | GO:0042574 | 3 | 0.023 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.022 | |
| cellular catabolic process | GO:0044248 | 295 | 0.022 | |
| single organism biosynthetic process | GO:0044711 | 342 | 0.022 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.022 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.022 | |
| organophosphate metabolic process | GO:0019637 | 370 | 0.022 | |
| regulation of hormone levels | GO:0010817 | 187 | 0.021 | |
| single organism reproductive process | GO:0044702 | 297 | 0.021 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.021 | |
| glycosyl compound metabolic process | GO:1901657 | 182 | 0.020 | |
| purine nucleotide metabolic process | GO:0006163 | 229 | 0.020 | |
| response to nutrient | GO:0007584 | 248 | 0.019 | |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.019 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.019 | |
| purine containing compound metabolic process | GO:0072521 | 253 | 0.019 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.018 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.018 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.018 | |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.017 | |
| purine ribonucleoside metabolic process | GO:0046128 | 168 | 0.017 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.017 | |
| ribonucleotide metabolic process | GO:0009259 | 231 | 0.017 | |
| amine metabolic process | GO:0009308 | 38 | 0.016 | |
| cellular lipid metabolic process | GO:0044255 | 208 | 0.016 | |
| response to metal ion | GO:0010038 | 253 | 0.016 | |
| aging | GO:0007568 | 241 | 0.016 | |
| cellular response to organonitrogen compound | GO:0071417 | 197 | 0.016 | |
| ribose phosphate metabolic process | GO:0019693 | 235 | 0.016 | |
| cellular response to hormone stimulus | GO:0032870 | 247 | 0.015 | |
| multicellular organismal reproductive process | GO:0048609 | 233 | 0.015 | |
| intracellular signal transduction | GO:0035556 | 314 | 0.015 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.015 | |
| response to peptide | GO:1901652 | 292 | 0.015 | |
| transcription dna templated | GO:0006351 | 377 | 0.015 | |
| multicellular organism reproduction | GO:0032504 | 233 | 0.015 | |
| regulation of molecular function | GO:0065009 | 398 | 0.015 | |
| reproduction | GO:0000003 | 245 | 0.015 | |
| signal release | GO:0023061 | 145 | 0.015 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 167 | 0.015 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.014 | |
| cellular response to nitrogen compound | GO:1901699 | 210 | 0.014 | |
| regulation of cellular component organization | GO:0051128 | 368 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 167 | 0.014 | |
| positive regulation of neurogenesis | GO:0050769 | 165 | 0.014 | |
| response to estrogen | GO:0043627 | 232 | 0.014 | |
| secretion by cell | GO:0032940 | 248 | 0.014 | |
| reproductive process | GO:0022414 | 372 | 0.014 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.013 | |
| cellular response to peptide | GO:1901653 | 133 | 0.013 | |
| purine ribonucleotide metabolic process | GO:0009150 | 227 | 0.013 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.013 | |
| sulfur compound metabolic process | GO:0006790 | 70 | 0.013 | |
| positive regulation of catalytic activity | GO:0043085 | 184 | 0.013 | |
| protein complex assembly | GO:0006461 | 263 | 0.013 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.013 | |
| oxidation reduction process | GO:0055114 | 304 | 0.012 | |
| protein phosphorylation | GO:0006468 | 345 | 0.012 | |
| regulation of transcription dna templated | GO:0006355 | 374 | 0.012 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.012 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.012 | |
| chemical homeostasis | GO:0048878 | 292 | 0.012 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.012 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.012 | |
| regulation of nervous system development | GO:0051960 | 264 | 0.012 | |
| positive regulation of nervous system development | GO:0051962 | 178 | 0.012 | |
| regulation of phosphorylation | GO:0042325 | 248 | 0.012 | |
| eye morphogenesis | GO:0048592 | 4 | 0.012 | |
| homeostatic process | GO:0042592 | 331 | 0.012 | |
| regulation of hormone secretion | GO:0046883 | 106 | 0.012 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.012 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.012 | |
| ribonucleoside metabolic process | GO:0009119 | 174 | 0.012 | |
| positive regulation of signaling | GO:0023056 | 270 | 0.012 | |
| cellular response to growth factor stimulus | GO:0071363 | 162 | 0.012 | |
| central nervous system development | GO:0007417 | 311 | 0.012 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.012 | |
| positive regulation of cell development | GO:0010720 | 176 | 0.012 | |
| heart morphogenesis | GO:0003007 | 3 | 0.012 | |
| tissue development | GO:0009888 | 252 | 0.012 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.011 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 163 | 0.011 | |
| protein oligomerization | GO:0051259 | 191 | 0.011 | |
| lipid biosynthetic process | GO:0008610 | 128 | 0.011 | |
| apoptotic process | GO:0006915 | 381 | 0.011 | |
| small molecule biosynthetic process | GO:0044283 | 124 | 0.011 | |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.011 | |
| embryonic pattern specification | GO:0009880 | 1 | 0.011 | |
| carbohydrate metabolic process | GO:0005975 | 130 | 0.011 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.011 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.011 | |
| negative regulation of programmed cell death | GO:0043069 | 183 | 0.011 | |
| hormone secretion | GO:0046879 | 115 | 0.011 | |
| regulation of multicellular organismal development | GO:2000026 | 376 | 0.011 | |
| metal ion homeostasis | GO:0055065 | 186 | 0.011 | |
| response to inorganic substance | GO:0010035 | 377 | 0.011 | |
| rna metabolic process | GO:0016070 | 406 | 0.011 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 1 | 0.011 | |
| regulation of protein modification process | GO:0031399 | 194 | 0.011 | |
| urogenital system development | GO:0001655 | 78 | 0.011 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.011 | |
| response to amino acid | GO:0043200 | 75 | 0.011 | |
| programmed cell death | GO:0012501 | 392 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 179 | 0.011 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.010 | |
| positive regulation of triglyceride biosynthetic process | GO:0010867 | 4 | 0.010 | |
| cellular component assembly | GO:0022607 | 360 | 0.010 | |
| response to purine containing compound | GO:0014074 | 126 | 0.010 | |
| regulation of neurogenesis | GO:0050767 | 247 | 0.010 | |
| positive regulation of transport | GO:0051050 | 245 | 0.010 | |
| intracellular transport | GO:0046907 | 185 | 0.010 | |
| regulation of catalytic activity | GO:0050790 | 304 | 0.010 | |
| positive regulation of cell proliferation | GO:0008284 | 249 | 0.010 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 118 | 0.010 | |
| lipid storage | GO:0019915 | 1 | 0.010 | |
| negative regulation of gene expression | GO:0010629 | 199 | 0.010 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 148 | 0.010 | |
| axis specification | GO:0009798 | 4 | 0.010 | |
| spermatogenesis | GO:0007283 | 99 | 0.010 | |
| regulation of neuron differentiation | GO:0045664 | 208 | 0.010 | |
