| cellular component assembly | GO:0022607 | 360 | 0.156 | Yeast |
| cellular component biogenesis | GO:0044085 | 368 | 0.126 | Yeast |
| rna metabolic process | GO:0016070 | 406 | 0.099 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.079 | Yeast |
| baculum development | GO:1990375 | 1 | 0.069 | |
| ribosomal small subunit assembly | GO:0000028 | 6 | 0.056 | Yeast |
| organelle organization | GO:0006996 | 266 | 0.054 | Yeast |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.053 | Yeast |
| spindle organization | GO:0007051 | 2 | 0.053 | |
| cellular macromolecular complex assembly | GO:0034622 | 58 | 0.045 | Yeast |
| cellular amine metabolic process | GO:0044106 | 38 | 0.042 | |
| positive regulation of toll like receptor signaling pathway | GO:0034123 | 1 | 0.041 | |
| programmed cell death | GO:0012501 | 392 | 0.039 | |
| mitotic spindle organization | GO:0007052 | 2 | 0.038 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.034 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.033 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.032 | |
| glucose 6 phosphate metabolic process | GO:0051156 | 11 | 0.032 | |
| regulation of protein stability | GO:0031647 | 6 | 0.029 | |
| iodide transport | GO:0015705 | 3 | 0.028 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.028 | |
| single organism organelle organization | GO:1902589 | 180 | 0.027 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.026 | |
| positive regulation of multicellular organismal process | GO:0051240 | 387 | 0.026 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.025 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.025 | |
| spliceosomal complex assembly | GO:0000245 | 2 | 0.025 | |
| reproduction | GO:0000003 | 245 | 0.025 | |
| amine metabolic process | GO:0009308 | 38 | 0.024 | |
| regulation of symbiosis encompassing mutualism through parasitism | GO:0043903 | 8 | 0.024 | |
| ncrna processing | GO:0034470 | 3 | 0.024 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.024 | |
| cell cycle | GO:0007049 | 101 | 0.024 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.023 | |
| ion homeostasis | GO:0050801 | 212 | 0.023 | |
| positive regulation of phosphatase activity | GO:0010922 | 7 | 0.023 | |
| neuron differentiation | GO:0030182 | 368 | 0.022 | |
| negative regulation of inflammatory response to antigenic stimulus | GO:0002862 | 1 | 0.022 | |
| apoptotic process | GO:0006915 | 381 | 0.022 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.022 | |
| insulin secretion involved in cellular response to glucose stimulus | GO:0035773 | 14 | 0.021 | |
| triglyceride homeostasis | GO:0070328 | 2 | 0.021 | |
| chemical homeostasis | GO:0048878 | 292 | 0.020 | |
| regulation of cellular localization | GO:0060341 | 263 | 0.020 | |
| oxidation reduction process | GO:0055114 | 304 | 0.020 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.020 | |
| anatomical structure morphogenesis | GO:0009653 | 298 | 0.019 | |
| cellular catabolic process | GO:0044248 | 295 | 0.019 | |
| homeostatic process | GO:0042592 | 331 | 0.019 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.018 | |
| vesicle mediated transport | GO:0016192 | 181 | 0.018 | |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.018 | |
| purine nucleoside catabolic process | GO:0006152 | 124 | 0.018 | |
| neuropeptide catabolic process | GO:0010813 | 1 | 0.018 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.018 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.017 | |
| response to parathyroid hormone | GO:0071107 | 10 | 0.017 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.017 | |
| localization within membrane | GO:0051668 | 2 | 0.017 | |
| ribonucleotide catabolic process | GO:0009261 | 136 | 0.017 | |
| positive regulation of nuclear division | GO:0051785 | 7 | 0.017 | |
| positive regulation of signaling | GO:0023056 | 270 | 0.017 | |
| positive regulation of molecular function | GO:0044093 | 230 | 0.017 | |
| positive regulation of protein metabolic process | GO:0051247 | 178 | 0.017 | |
| ribonucleoprotein complex assembly | GO:0022618 | 8 | 0.016 | Yeast |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.016 | |
| regulation of protein phosphorylation | GO:0001932 | 183 | 0.015 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 262 | 0.015 | |
| peptidyl cysteine modification | GO:0018198 | 2 | 0.015 | |
| cytoplasmic translation | GO:0002181 | 1 | 0.015 | |
| regulation of membrane potential | GO:0042391 | 110 | 0.015 | |
| locomotion | GO:0040011 | 237 | 0.015 | |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.015 | |
| ribonucleoside metabolic process | GO:0009119 | 174 | 0.015 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.015 | |
| negative regulation of protein modification by small protein conjugation or removal | GO:1903321 | 4 | 0.015 | |
| negative regulation of response to stimulus | GO:0048585 | 155 | 0.014 | |
| negative regulation of signaling | GO:0023057 | 157 | 0.014 | |
| membrane organization | GO:0061024 | 94 | 0.014 | |
| regulation of molecular function | GO:0065009 | 398 | 0.014 | |
| cellular homeostasis | GO:0019725 | 252 | 0.014 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.014 | |
| single organism catabolic process | GO:0044712 | 283 | 0.014 | |
| protein complex assembly | GO:0006461 | 263 | 0.013 | |
| growth | GO:0040007 | 165 | 0.013 | |
| behavior | GO:0007610 | 205 | 0.013 | |
| nucleotide metabolic process | GO:0009117 | 279 | 0.013 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.013 | |
| positive regulation of peptidyl threonine phosphorylation | GO:0010800 | 1 | 0.013 | |
| rrna processing | GO:0006364 | 2 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 141 | 0.013 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.013 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 91 | 0.013 | |
| macromolecule localization | GO:0033036 | 252 | 0.013 | |
| spermatid nucleus differentiation | GO:0007289 | 1 | 0.013 | |
| glycosyl compound metabolic process | GO:1901657 | 182 | 0.013 | |
| cytoskeleton dependent cytokinesis | GO:0061640 | 2 | 0.012 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.012 | |
| protein phosphorylation | GO:0006468 | 345 | 0.012 | |
| microtubule cytoskeleton organization | GO:0000226 | 25 | 0.012 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.012 | |
| smad protein import into nucleus | GO:0007184 | 3 | 0.012 | |
| carbohydrate homeostasis | GO:0033500 | 75 | 0.012 | |
| cell morphogenesis involved in differentiation | GO:0000904 | 119 | 0.012 | |
| developmental growth | GO:0048589 | 100 | 0.012 | |
| positive regulation of cell communication | GO:0010647 | 271 | 0.012 | |
| regulation of signal transduction | GO:0009966 | 318 | 0.012 | |
| regulation of nuclear division | GO:0051783 | 9 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 169 | 0.012 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.012 | |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.011 | |
| maintenance of protein localization in organelle | GO:0072595 | 1 | 0.011 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 83 | 0.011 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.011 | |
| dorsal ventral pattern formation | GO:0009953 | 4 | 0.011 | |
| t cell activation | GO:0042110 | 29 | 0.011 | |
| ribonucleoprotein complex biogenesis | GO:0022613 | 10 | 0.011 | Yeast |
| regulation of cell aging | GO:0090342 | 1 | 0.011 | |
| catabolic process | GO:0009056 | 351 | 0.011 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.011 | |
| reproductive structure development | GO:0048608 | 128 | 0.011 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.011 | |
| establishment of protein localization | GO:0045184 | 141 | 0.011 | |
| positive regulation of mitotic cell cycle | GO:0045931 | 16 | 0.011 | |
| regulation of embryonic development | GO:0045995 | 2 | 0.011 | |
| protein oligomerization | GO:0051259 | 191 | 0.010 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.010 | |
| cellular response to extracellular stimulus | GO:0031668 | 73 | 0.010 | |
| response to yeast | GO:0001878 | 3 | 0.010 | |
| regulation of cell growth | GO:0001558 | 85 | 0.010 | |
| neuromuscular process | GO:0050905 | 2 | 0.010 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.010 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 4 | 0.010 | |
