| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 234 | 0.605 | |
| transcription dna templated | GO:0006351 | 377 | 0.506 | |
| transcription from rna polymerase ii promoter | GO:0006366 | 252 | 0.450 | |
| regulation of rna metabolic process | GO:0051252 | 391 | 0.443 | |
| nucleic acid templated transcription | GO:0097659 | 379 | 0.425 | |
| rna metabolic process | GO:0016070 | 406 | 0.419 | |
| rna biosynthetic process | GO:0032774 | 380 | 0.403 | |
| regulation of transcription dna templated | GO:0006355 | 374 | 0.400 | |
| regulation of nucleic acid templated transcription | GO:1903506 | 380 | 0.364 | |
| regulation of rna biosynthetic process | GO:2001141 | 381 | 0.346 | |
| macromolecular complex assembly | GO:0065003 | 273 | 0.278 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 161 | 0.267 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 153 | 0.230 | |
| negative regulation of rna metabolic process | GO:0051253 | 123 | 0.215 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 148 | 0.209 | |
| negative regulation of cellular metabolic process | GO:0031324 | 281 | 0.190 | |
| cellular component biogenesis | GO:0044085 | 368 | 0.184 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 117 | 0.178 | |
| macromolecular complex subunit organization | GO:0043933 | 339 | 0.166 | |
| positive regulation of transcription dna templated | GO:0045893 | 197 | 0.159 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 260 | 0.150 | |
| negative regulation of gene expression | GO:0010629 | 199 | 0.144 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 118 | 0.131 | |
| organelle organization | GO:0006996 | 266 | 0.130 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 161 | 0.121 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 141 | 0.114 | |
| positive regulation of rna metabolic process | GO:0051254 | 203 | 0.108 | |
| regulation of cellular component organization | GO:0051128 | 368 | 0.106 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 334 | 0.104 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 148 | 0.102 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 75 | 0.096 | |
| positive regulation of gene expression | GO:0010628 | 244 | 0.096 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 295 | 0.094 | |
| negative regulation of transcription dna templated | GO:0045892 | 116 | 0.089 | |
| negative regulation of metabolic process | GO:0009892 | 331 | 0.088 | |
| macromolecule localization | GO:0033036 | 252 | 0.088 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 197 | 0.086 | |
| cellular component assembly | GO:0022607 | 360 | 0.081 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 197 | 0.079 | |
| protein complex subunit organization | GO:0071822 | 302 | 0.079 | |
| cellular response to stress | GO:0033554 | 269 | 0.076 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 319 | 0.075 | |
| transforming growth factor beta3 production | GO:0032907 | 2 | 0.074 | |
| single organism organelle organization | GO:1902589 | 180 | 0.073 | |
| regulation of cellular protein metabolic process | GO:0032268 | 267 | 0.072 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 247 | 0.072 | |
| alternative mrna splicing via spliceosome | GO:0000380 | 4 | 0.071 | |
| cell morphogenesis involved in differentiation | GO:0000904 | 119 | 0.065 | |
| positive regulation of biosynthetic process | GO:0009891 | 319 | 0.064 | |
| single organism reproductive process | GO:0044702 | 297 | 0.063 | |
| negative regulation of rna splicing | GO:0033119 | 3 | 0.063 | |
| negative regulation of biosynthetic process | GO:0009890 | 168 | 0.061 | |
| protein complex assembly | GO:0006461 | 263 | 0.060 | |
| intracellular signal transduction | GO:0035556 | 314 | 0.059 | |
| cell projection morphogenesis | GO:0048858 | 123 | 0.057 | |
| regulation of nervous system development | GO:0051960 | 264 | 0.054 | |
| cell fate determination | GO:0001709 | 2 | 0.054 | |
| cell projection organization | GO:0030030 | 302 | 0.053 | |
| anterior posterior pattern specification | GO:0009952 | 1 | 0.051 | |
| embryonic pattern specification | GO:0009880 | 1 | 0.050 | |
| cellular component morphogenesis | GO:0032989 | 155 | 0.048 | |
| dna metabolic process | GO:0006259 | 96 | 0.048 | |
| rhythmic process | GO:0048511 | 156 | 0.047 | |
| chemotaxis | GO:0006935 | 66 | 0.047 | |
| reproductive process | GO:0022414 | 372 | 0.044 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 167 | 0.043 | |
| multi organism reproductive process | GO:0044703 | 262 | 0.043 | |
| organic acid metabolic process | GO:0006082 | 292 | 0.042 | |
| mitotic spindle organization | GO:0007052 | 2 | 0.041 | |
| cellular component movement | GO:0006928 | 248 | 0.041 | |
| regulation of phosphate metabolic process | GO:0019220 | 349 | 0.039 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 27 | 0.039 | |
| mrna metabolic process | GO:0016071 | 20 | 0.038 | |
| regulation of molecular function | GO:0065009 | 398 | 0.038 | |
| spindle organization | GO:0007051 | 2 | 0.037 | |
| cell morphogenesis | GO:0000902 | 142 | 0.037 | |
| cellular response to growth factor stimulus | GO:0071363 | 162 | 0.036 | |
| regulation of alternative mrna splicing via spliceosome | GO:0000381 | 2 | 0.036 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 2 | 0.036 | |
| glycogen metabolic process | GO:0005977 | 23 | 0.035 | |
| taxis | GO:0042330 | 67 | 0.035 | |
| cellular macromolecule localization | GO:0070727 | 122 | 0.035 | |
| intracellular transport | GO:0046907 | 185 | 0.035 | |
| anatomical structure morphogenesis | GO:0009653 | 298 | 0.035 | |
| cell part morphogenesis | GO:0032990 | 123 | 0.035 | |
| central nervous system development | GO:0007417 | 311 | 0.035 | |
| protein complex biogenesis | GO:0070271 | 263 | 0.034 | |
| multicellular organism reproduction | GO:0032504 | 233 | 0.034 | |
| circadian regulation of gene expression | GO:0032922 | 3 | 0.034 | |
| neuron projection development | GO:0031175 | 273 | 0.034 | |
| regulation of multicellular organismal development | GO:2000026 | 376 | 0.033 | |
| carboxylic acid metabolic process | GO:0019752 | 289 | 0.033 | |
| locomotion | GO:0040011 | 237 | 0.032 | |
| cellular macromolecular complex assembly | GO:0034622 | 58 | 0.032 | |
| neuron development | GO:0048666 | 286 | 0.032 | |
| response to radiation | GO:0009314 | 137 | 0.032 | |
| urogenital system development | GO:0001655 | 78 | 0.032 | |
| amine metabolic process | GO:0009308 | 38 | 0.032 | |
| cell cycle | GO:0007049 | 101 | 0.032 | |
| single organism carbohydrate metabolic process | GO:0044723 | 118 | 0.031 | |
| cell morphogenesis involved in neuron differentiation | GO:0048667 | 106 | 0.031 | |
| regulation of mrna splicing via spliceosome | GO:0048024 | 3 | 0.031 | |
| regulation of apoptotic process | GO:0042981 | 335 | 0.030 | |
| axis specification | GO:0009798 | 4 | 0.030 | |
| peptidyl amino acid modification | GO:0018193 | 126 | 0.029 | |
| regulation of cell cycle | GO:0051726 | 73 | 0.029 | |
| regulation of protein metabolic process | GO:0051246 | 289 | 0.028 | |
| response to extracellular stimulus | GO:0009991 | 380 | 0.028 | |
| epithelial cell differentiation | GO:0030855 | 71 | 0.027 | |
| regulation of cellular amine metabolic process | GO:0033238 | 8 | 0.027 | |
| entrainment of circadian clock | GO:0009649 | 3 | 0.027 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.027 | |
| protein phosphorylation | GO:0006468 | 345 | 0.027 | |
| apoptotic process | GO:0006915 | 381 | 0.026 | |
| regulation of phosphorus metabolic process | GO:0051174 | 349 | 0.026 | |
| regulation of phosphorylation | GO:0042325 | 248 | 0.025 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 3 | 0.025 | |
| sexual reproduction | GO:0019953 | 148 | 0.025 | |
| protein localization | GO:0008104 | 191 | 0.024 | |
| regulation of signal transduction | GO:0009966 | 318 | 0.024 | |
| regulation of catalytic activity | GO:0050790 | 304 | 0.024 | |
| cellular ketone metabolic process | GO:0042180 | 51 | 0.024 | |
| enzyme linked receptor protein signaling pathway | GO:0007167 | 116 | 0.024 | |
| chromosome segregation | GO:0007059 | 2 | 0.024 | |
| negative regulation of protein metabolic process | GO:0051248 | 114 | 0.024 | |
| tissue development | GO:0009888 | 252 | 0.023 | |
| cellular amine metabolic process | GO:0044106 | 38 | 0.023 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 262 | 0.023 | |
| carbohydrate metabolic process | GO:0005975 | 130 | 0.022 | |
| cellular response to endogenous stimulus | GO:0071495 | 377 | 0.022 | |
| oxoacid metabolic process | GO:0043436 | 290 | 0.022 | |
| reproduction | GO:0000003 | 245 | 0.022 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 1 | 0.021 | |
| neuron projection morphogenesis | GO:0048812 | 122 | 0.021 | |
| regulation of gene expression epigenetic | GO:0040029 | 10 | 0.021 | |
| regulation of programmed cell death | GO:0043067 | 341 | 0.021 | |
| chromatin modification | GO:0016568 | 33 | 0.021 | |
| positive regulation of cell communication | GO:0010647 | 271 | 0.021 | |
| circadian rhythm | GO:0007623 | 88 | 0.021 | |
| signal transduction by phosphorylation | GO:0023014 | 144 | 0.021 | |
| rna splicing via transesterification reactions | GO:0000375 | 7 | 0.020 | |
| catabolic process | GO:0009056 | 351 | 0.020 | |
| mrna processing | GO:0006397 | 14 | 0.020 | |
| ossification | GO:0001503 | 70 | 0.019 | |
| regulation of cell development | GO:0060284 | 263 | 0.019 | |
| negative regulation of cell death | GO:0060548 | 229 | 0.019 | |
| regulation of cell differentiation | GO:0045595 | 320 | 0.019 | |
| positive regulation of phosphorylation | GO:0042327 | 177 | 0.019 | |
| neuron differentiation | GO:0030182 | 368 | 0.019 | |
| regulation of cell proliferation | GO:0042127 | 359 | 0.019 | |
| glandular epithelial cell differentiation | GO:0002067 | 4 | 0.019 | |
| positive regulation of signaling | GO:0023056 | 270 | 0.019 | |
| positive regulation of cell proliferation | GO:0008284 | 249 | 0.019 | |
| meiotic cell cycle process | GO:1903046 | 3 | 0.019 | |
| response to growth factor | GO:0070848 | 189 | 0.018 | |
| regulation of protein phosphorylation | GO:0001932 | 183 | 0.018 | |
| development of primary sexual characteristics | GO:0045137 | 107 | 0.017 | |
| response to inorganic substance | GO:0010035 | 377 | 0.017 | |
| response to oxidative stress | GO:0006979 | 186 | 0.017 | |
| ion homeostasis | GO:0050801 | 212 | 0.017 | |
| mrna stabilization | GO:0048255 | 2 | 0.017 | |
| positive regulation of protein metabolic process | GO:0051247 | 178 | 0.017 | |
| behavior | GO:0007610 | 205 | 0.017 | |
| negative regulation of multicellular organismal process | GO:0051241 | 203 | 0.017 | |
| cytoplasmic transport | GO:0016482 | 115 | 0.017 | |
| histone h3 acetylation | GO:0043966 | 2 | 0.017 | |
| negative regulation of transmembrane receptor protein serine threonine kinase signaling pathway | GO:0090101 | 2 | 0.017 | |
| chromosome organization | GO:0051276 | 36 | 0.017 | |
| homeostatic process | GO:0042592 | 331 | 0.017 | |
| positive regulation of signal transduction | GO:0009967 | 175 | 0.017 | |
| response to temperature stimulus | GO:0009266 | 94 | 0.017 | |
| chromatin organization | GO:0006325 | 34 | 0.017 | |
| regulation of mitotic sister chromatid segregation | GO:0033047 | 1 | 0.017 | |
| nuclear transport | GO:0051169 | 49 | 0.017 | |
| positive regulation of cell death | GO:0010942 | 184 | 0.016 | |
| cell motility | GO:0048870 | 202 | 0.016 | |
| cellular carbohydrate metabolic process | GO:0044262 | 72 | 0.016 | |
| oxidation reduction process | GO:0055114 | 304 | 0.016 | |
| carbohydrate derivative metabolic process | GO:1901135 | 346 | 0.016 | |
| response to nutrient levels | GO:0031667 | 370 | 0.016 | |
| rna splicing via transesterification reactions with bulged adenosine as nucleophile | GO:0000377 | 7 | 0.016 | |
| protein maturation | GO:0051604 | 68 | 0.016 | |
| cognition | GO:0050890 | 92 | 0.016 | |
| positive regulation of neuron projection development | GO:0010976 | 99 | 0.016 | |
| establishment of tissue polarity | GO:0007164 | 2 | 0.016 | |
| positive regulation of developmental process | GO:0051094 | 283 | 0.016 | |
| cell type specific apoptotic process | GO:0097285 | 134 | 0.016 | |
| response to ethanol | GO:0045471 | 162 | 0.016 | |
| multicellular organismal reproductive process | GO:0048609 | 233 | 0.016 | |
| cell migration | GO:0016477 | 197 | 0.015 | |
| response to transforming growth factor beta | GO:0071559 | 46 | 0.015 | |
| regulation of catabolic process | GO:0009894 | 113 | 0.015 | |
| positive regulation of protein dephosphorylation | GO:0035307 | 4 | 0.015 | |
| gamete generation | GO:0007276 | 124 | 0.015 | |
| regulation of organelle organization | GO:0033043 | 80 | 0.015 | |
| positive regulation of transforming growth factor beta3 production | GO:0032916 | 2 | 0.015 | |
| reproductive structure development | GO:0048608 | 128 | 0.015 | |
| regulation of cell morphogenesis involved in differentiation | GO:0010769 | 72 | 0.014 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 262 | 0.014 | |
| brain development | GO:0007420 | 247 | 0.014 | |
| single organism intracellular transport | GO:1902582 | 166 | 0.014 | |
| sulfur compound metabolic process | GO:0006790 | 70 | 0.014 | |
| single organism behavior | GO:0044708 | 130 | 0.014 | |
| cell cycle checkpoint | GO:0000075 | 2 | 0.014 | |
| negative regulation of circadian rhythm | GO:0042754 | 5 | 0.014 | |
| negative regulation of developmental process | GO:0051093 | 125 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 107 | 0.014 | |
| bmp signaling pathway | GO:0030509 | 4 | 0.014 | |
| negative regulation of apoptotic process | GO:0043066 | 181 | 0.014 | |
| rna splicing | GO:0008380 | 11 | 0.014 | |
| positive regulation of intracellular signal transduction | GO:1902533 | 138 | 0.014 | |
| positive regulation of cellular component organization | GO:0051130 | 200 | 0.014 | |
| regulation of nucleobase containing compound transport | GO:0032239 | 1 | 0.014 | |
| regulation of growth | GO:0040008 | 105 | 0.014 | |
| organic substance catabolic process | GO:1901575 | 316 | 0.013 | |
| regulation of neuron projection development | GO:0010975 | 161 | 0.013 | |
| cellular catabolic process | GO:0044248 | 295 | 0.013 | |
| regulation of meiotic cell cycle | GO:0051445 | 3 | 0.013 | |
| positive regulation of programmed cell death | GO:0043068 | 157 | 0.013 | |
| somatic stem cell division | GO:0048103 | 2 | 0.013 | |
| positive regulation of catalytic activity | GO:0043085 | 184 | 0.013 | |
| regulation of intracellular transport | GO:0032386 | 65 | 0.013 | |
| regulation of response to stress | GO:0080134 | 126 | 0.013 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 316 | 0.013 | |
| response to oxygen levels | GO:0070482 | 265 | 0.013 | |
| negative regulation of programmed cell death | GO:0043069 | 183 | 0.013 | |
| metal ion transport | GO:0030001 | 289 | 0.013 | |
| cellular homeostasis | GO:0019725 | 252 | 0.013 | |
| monocarboxylic acid metabolic process | GO:0032787 | 152 | 0.013 | |
| chemical homeostasis | GO:0048878 | 292 | 0.013 | |
| embryonic axis specification | GO:0000578 | 1 | 0.013 | |
| rna localization | GO:0006403 | 4 | 0.013 | |
| sodium ion transport | GO:0006814 | 82 | 0.013 | |
| regulation of cellular component biogenesis | GO:0044087 | 86 | 0.013 | |
| regulation of cellular localization | GO:0060341 | 263 | 0.013 | |
| purine ribonucleoside metabolic process | GO:0046128 | 168 | 0.013 | |
| cytoskeleton organization | GO:0007010 | 111 | 0.013 | |
| response to other organism | GO:0051707 | 220 | 0.013 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 106 | 0.013 | |
| chemosensory behavior | GO:0007635 | 2 | 0.012 | |
| mrna splicing via spliceosome | GO:0000398 | 7 | 0.012 | |
| metaphase anaphase transition of mitotic cell cycle | GO:0007091 | 1 | 0.012 | |
| regulation of dna metabolic process | GO:0051052 | 60 | 0.012 | |
| regulation of intracellular signal transduction | GO:1902531 | 218 | 0.012 | |
| cellular response to organic cyclic compound | GO:0071407 | 202 | 0.012 | |
| cellular response to oxygen containing compound | GO:1901701 | 386 | 0.012 | |
| rna processing | GO:0006396 | 22 | 0.012 | |
| mapk cascade | GO:0000165 | 140 | 0.012 | |
| cellular protein complex assembly | GO:0043623 | 44 | 0.012 | |
| axonogenesis | GO:0007409 | 71 | 0.012 | |
| cofactor metabolic process | GO:0051186 | 95 | 0.012 | |
| fatty acid metabolic process | GO:0006631 | 99 | 0.012 | |
| olfactory learning | GO:0008355 | 1 | 0.012 | |
| multicellular organism growth | GO:0035264 | 1 | 0.012 | |
| negative regulation of molecular function | GO:0044092 | 133 | 0.012 | |
| photoperiodism | GO:0009648 | 4 | 0.012 | |
| single organism catabolic process | GO:0044712 | 283 | 0.012 | |
| positive regulation of response to stimulus | GO:0048584 | 285 | 0.012 | |
| chromatin remodeling | GO:0006338 | 3 | 0.012 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 124 | 0.012 | |
| regulation of circadian rhythm | GO:0042752 | 27 | 0.012 | |
| sex differentiation | GO:0007548 | 113 | 0.012 | |
| asymmetric protein localization | GO:0008105 | 2 | 0.012 | |
| reproductive system development | GO:0061458 | 128 | 0.011 | |
| cellular response to oxidative stress | GO:0034599 | 76 | 0.011 | |
| gliogenesis | GO:0042063 | 93 | 0.011 | |
| biological adhesion | GO:0022610 | 110 | 0.011 | |
| response to wounding | GO:0009611 | 254 | 0.011 | |
| calcium mediated signaling | GO:0019722 | 23 | 0.011 | |
| cellular protein localization | GO:0034613 | 122 | 0.011 | |
| cellular chemical homeostasis | GO:0055082 | 247 | 0.011 | |
| regulation of cellular catabolic process | GO:0031329 | 101 | 0.011 | |
| response to bacterium | GO:0009617 | 200 | 0.011 | |
| anaphase promoting complex dependent proteasomal ubiquitin dependent protein catabolic process | GO:0031145 | 1 | 0.011 | |
| programmed cell death | GO:0012501 | 392 | 0.011 | |
| double strand break repair | GO:0006302 | 1 | 0.011 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 41 | 0.011 | |
| proteolysis | GO:0006508 | 175 | 0.011 | |
| neurological system process | GO:0050877 | 219 | 0.011 | |
| protein oligomerization | GO:0051259 | 191 | 0.011 | |
| regulation of neurogenesis | GO:0050767 | 247 | 0.011 | |
| defense response to gram negative bacterium | GO:0050829 | 3 | 0.011 | |
| membrane organization | GO:0061024 | 94 | 0.011 | |
| learning or memory | GO:0007611 | 90 | 0.011 | |
| nucleocytoplasmic transport | GO:0006913 | 48 | 0.011 | |
| negative regulation of cell division | GO:0051782 | 1 | 0.011 | |
| calcium ion homeostasis | GO:0055074 | 162 | 0.011 | |
| metaphase anaphase transition of cell cycle | GO:0044784 | 1 | 0.011 | |
| regulation of neuron death | GO:1901214 | 115 | 0.011 | |
| generation of precursor metabolites and energy | GO:0006091 | 62 | 0.011 | |
| dendrite development | GO:0016358 | 72 | 0.011 | |
| regulation of transforming growth factor beta3 production | GO:0032910 | 2 | 0.011 | |
| nitrogen compound transport | GO:0071705 | 229 | 0.011 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 3 | 0.011 | |
| monovalent inorganic cation transport | GO:0015672 | 172 | 0.011 | |
| axon development | GO:0061564 | 96 | 0.011 | |
| positive regulation of apoptotic process | GO:0043065 | 154 | 0.011 | |
| cellular response to hormone stimulus | GO:0032870 | 247 | 0.010 | |
| protein processing | GO:0016485 | 68 | 0.010 | |
| eye morphogenesis | GO:0048592 | 4 | 0.010 | |
| rna stabilization | GO:0043489 | 2 | 0.010 | |
| regulation of mrna stability | GO:0043488 | 3 | 0.010 | |
| mitotic cell cycle | GO:0000278 | 49 | 0.010 | |
| cellular response to reactive oxygen species | GO:0034614 | 55 | 0.010 | |
| epithelium development | GO:0060429 | 96 | 0.010 | |
| head development | GO:0060322 | 247 | 0.010 | |
| microtubule organizing center organization | GO:0031023 | 1 | 0.010 | |
