IMP: Integrative Multi-species Prediction

Rattus norvegicus

15 known processes

Amigo3

adhesion molecule with Ig like domain 3

Entrez: 316003
RGD: 631413
UniProtKB: Q80ZD5

Process Predictions
Disease Predictions

Amigo3 biological process predictions

Show only novel predictionsHighlight processes of functional analogs

Filter by process size:

Biological process	GO term ID	Process size	Probability
cellular component biogenesis	GO:0044085	368	0.036
response to nutrient levels	GO:0031667	370	0.028
response to extracellular stimulus	GO:0009991	380	0.025
blood circulation	GO:0008015	183	0.025
positive regulation of nitrogen compound metabolic process	GO:0051173	334	0.025
aging	GO:0007568	241	0.025
cellular component assembly	GO:0022607	360	0.024
anion transport	GO:0006820	178	0.024
cation transmembrane transport	GO:0098655	263	0.023
cellular response to stress	GO:0033554	269	0.023
carboxylic acid transport	GO:0046942	115	0.023
reproduction	GO:0000003	245	0.022
carbohydrate derivative metabolic process	GO:1901135	346	0.021
organonitrogen compound biosynthetic process	GO:1901566	167	0.021
macromolecular complex assembly	GO:0065003	273	0.020
heart morphogenesis	GO:0003007	3	0.019
positive regulation of cellular biosynthetic process	GO:0031328	295	0.019
macromolecule localization	GO:0033036	252	0.018
protein complex assembly	GO:0006461	263	0.018
regulation of cellular component organization	GO:0051128	368	0.018
neuron differentiation	GO:0030182	368	0.018
nucleobase containing small molecule metabolic process	GO:0055086	316	0.018
catabolic process	GO:0009056	351	0.017
response to metal ion	GO:0010038	253	0.017
cation transport	GO:0006812	382	0.017
organic acid metabolic process	GO:0006082	292	0.017
protein oligomerization	GO:0051259	191	0.017
cellular catabolic process	GO:0044248	295	0.017
reproductive process	GO:0022414	372	0.016
programmed cell death	GO:0012501	392	0.016
multicellular organism reproduction	GO:0032504	233	0.016
cellular amine metabolic process	GO:0044106	38	0.016
intracellular transport	GO:0046907	185	0.016
response to peptide hormone	GO:0043434	278	0.016
amine metabolic process	GO:0009308	38	0.016
protein localization	GO:0008104	191	0.016
circulatory system process	GO:0003013	183	0.016
intracellular signal transduction	GO:0035556	314	0.016
regulation of programmed cell death	GO:0043067	341	0.015
response to growth factor	GO:0070848	189	0.015
cellular amino acid metabolic process	GO:0006520	107	0.015
positive regulation of immunoglobulin production	GO:0002639	4	0.015
synaptic transmission	GO:0007268	235	0.015
response to peptide	GO:1901652	292	0.015
multicellular organismal reproductive process	GO:0048609	233	0.014
chemical homeostasis	GO:0048878	292	0.014
cellular response to endogenous stimulus	GO:0071495	377	0.014
regulation of hormone levels	GO:0010817	187	0.014
cellular response to oxygen containing compound	GO:1901701	386	0.014
carbohydrate derivative biosynthetic process	GO:1901137	124	0.014
transmembrane transport	GO:0055085	412	0.014
positive regulation of cell proliferation	GO:0008284	249	0.014
proteolysis	GO:0006508	175	0.013
anatomical structure morphogenesis	GO:0009653	298	0.013
protein complex biogenesis	GO:0070271	263	0.013
homeostatic process	GO:0042592	331	0.013
positive regulation of nucleobase containing compound metabolic process	GO:0045935	319	0.013
small gtpase mediated signal transduction	GO:0007264	36	0.013
organic acid transport	GO:0015849	116	0.013
regulation of catalytic activity	GO:0050790	304	0.013
actin filament based process	GO:0030029	86	0.012
neurological system process	GO:0050877	219	0.012
cellular component morphogenesis	GO:0032989	155	0.012
positive regulation of biosynthetic process	GO:0009891	319	0.012
regulation of apoptotic process	GO:0042981	335	0.012
ion transmembrane transport	GO:0034220	365	0.012
cell morphogenesis	GO:0000902	142	0.012
carboxylic acid metabolic process	GO:0019752	289	0.012
metal ion transport	GO:0030001	289	0.012
nucleoside phosphate metabolic process	GO:0006753	283	0.012
spermatogenesis	GO:0007283	99	0.012
multi organism reproductive process	GO:0044703	262	0.012
cell projection organization	GO:0030030	302	0.012
protein complex subunit organization	GO:0071822	302	0.012
regulation of membrane potential	GO:0042391	110	0.012
regulation of system process	GO:0044057	208	0.011
secretion by cell	GO:0032940	248	0.011
response to monosaccharide	GO:0034284	159	0.011
regulation of secretion	GO:0051046	224	0.011
negative regulation of metabolic process	GO:0009892	331	0.011
neuron projection development	GO:0031175	273	0.011
polyamine biosynthetic process	GO:0006596	4	0.011
b cell activation involved in immune response	GO:0002312	1	0.011
ion homeostasis	GO:0050801	212	0.011
apoptotic process	GO:0006915	381	0.011
regulation of cellular amino acid metabolic process	GO:0006521	2	0.011
single organism reproductive process	GO:0044702	297	0.011
organelle organization	GO:0006996	266	0.011
rna biosynthetic process	GO:0032774	380	0.011
negative regulation of macromolecule metabolic process	GO:0010605	260	0.011
oxoacid metabolic process	GO:0043436	290	0.011
regulation of nervous system development	GO:0051960	264	0.011
cellular cation homeostasis	GO:0030003	180	0.011
positive regulation of cell communication	GO:0010647	271	0.011
regulation of anatomical structure size	GO:0090066	135	0.011
response to carbohydrate	GO:0009743	183	0.011
positive regulation of nucleotide metabolic process	GO:0045981	91	0.011
secretion	GO:0046903	307	0.011
organic substance catabolic process	GO:1901575	316	0.011
defense response	GO:0006952	194	0.011
regulation of phosphorus metabolic process	GO:0051174	349	0.011
organophosphate metabolic process	GO:0019637	370	0.010
response to decreased oxygen levels	GO:0036293	237	0.010
protein phosphorylation	GO:0006468	345	0.010
cellular response to peptide	GO:1901653	133	0.010
male gamete generation	GO:0048232	99	0.010
ribose phosphate metabolic process	GO:0019693	235	0.010
cellular component movement	GO:0006928	248	0.010
cytoplasmic transport	GO:0016482	115	0.010
cellular chemical homeostasis	GO:0055082	247	0.010
membrane organization	GO:0061024	94	0.010
ras protein signal transduction	GO:0007265	29	0.010
protein homooligomerization	GO:0051260	91	0.010
response to acid chemical	GO:0001101	222	0.010
inorganic cation transmembrane transport	GO:0098662	202	0.010
regulation of rna biosynthetic process	GO:2001141	381	0.010
cytoskeleton dependent cytokinesis	GO:0061640	2	0.010
cellular homeostasis	GO:0019725	252	0.010

Amigo3 disease predictions

Disease predictions are made from cross-annotation of human disease genes to the identified functional analogs in rat and predicted with the rat functional network.

Disease	DO term ID	Probability
myopathy	DOID:423	0.051
muscular disease	DOID:0080000	0.051
muscular dystrophy	DOID:9884	0.051
disease of anatomical entity	DOID:7	0.051
muscle tissue disease	DOID:66	0.051
musculoskeletal system disease	DOID:17	0.051
disease of cellular proliferation	DOID:14566	0.011
cancer	DOID:162	0.011
nervous system disease	DOID:863	0.011

Loading network...

Network Filters

Minimum relationship confidence:

Maximum number of genes:

Highlight known relationships in gold.

Graphical Options

Adjust edge length:

Adjust node size:

Fixed layout

Black background

Low confidence color:

Med confidence color:

High confidence color:

Hide the legend in the network