| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.997 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.963 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.944 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.901 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.786 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.616 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.562 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.532 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.500 | |
| transcriptional start site selection at rna polymerase ii promoter | GO:0001174 | 7 | 0.410 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.384 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.359 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.333 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.317 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.292 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.269 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.260 | |
| dna templated transcriptional start site selection | GO:0001173 | 7 | 0.256 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.241 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.230 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.222 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.220 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.189 | |
| positive regulation of transcription initiation from rna polymerase ii promoter | GO:0060261 | 13 | 0.177 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 57 | 0.177 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 19 | 0.174 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.169 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.159 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.144 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.143 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.136 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.133 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.123 | |
| positive regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045899 | 11 | 0.121 | |
| mrna 3 end processing | GO:0031124 | 54 | 0.118 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.118 | |
| proteolysis | GO:0006508 | 268 | 0.117 | |
| rna 3 end processing | GO:0031123 | 88 | 0.115 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.113 | |
| chromatin silencing | GO:0006342 | 147 | 0.111 | |
| purine nucleoside biosynthetic process | GO:0042451 | 31 | 0.111 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.110 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.102 | |
| termination of rna polymerase ii transcription | GO:0006369 | 26 | 0.101 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.101 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.093 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.091 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.091 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 59 | 0.089 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.089 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.086 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.083 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.082 | |
| dna repair | GO:0006281 | 236 | 0.081 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.080 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.080 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.074 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.073 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.071 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.071 | |
| establishment of rna localization | GO:0051236 | 92 | 0.071 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.069 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.068 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 68 | 0.067 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.066 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.065 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.062 | |
| ribonucleotide biosynthetic process | GO:0009260 | 44 | 0.060 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.060 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.060 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.059 | |
| ascospore formation | GO:0030437 | 107 | 0.057 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.057 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 63 | 0.057 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.055 | |
| negative regulation of mitosis | GO:0045839 | 39 | 0.055 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.054 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.053 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.050 | |
| mrna processing | GO:0006397 | 185 | 0.050 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.049 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.049 | |
| regulation of transcription involved in g1 s transition of mitotic cell cycle | GO:0000083 | 27 | 0.049 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.048 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.047 | |
| response to organic substance | GO:0010033 | 182 | 0.046 | |
| purine containing compound biosynthetic process | GO:0072522 | 53 | 0.046 | |
| protein localization to organelle | GO:0033365 | 337 | 0.046 | |
| nucleic acid transport | GO:0050657 | 94 | 0.045 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.045 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.045 | |
| positive regulation of transcription elongation from rna polymerase i promoter | GO:2001209 | 7 | 0.044 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.043 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.043 | |
| rna transport | GO:0050658 | 92 | 0.042 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.042 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.042 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.041 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.041 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.041 | |
| protein targeting | GO:0006605 | 272 | 0.041 | |
| nuclear transport | GO:0051169 | 165 | 0.040 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.040 | |
| chromatin organization | GO:0006325 | 242 | 0.040 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 20 | 0.040 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.040 | |
| cell cycle g1 s phase transition | GO:0044843 | 64 | 0.039 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.038 | |
| response to external stimulus | GO:0009605 | 158 | 0.038 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.038 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.038 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.038 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.038 | |
| purine nucleotide biosynthetic process | GO:0006164 | 41 | 0.037 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.037 | |
| transcription from rna polymerase iii promoter | GO:0006383 | 40 | 0.037 | |
| rna export from nucleus | GO:0006405 | 88 | 0.037 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.037 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.036 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.036 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.036 | |
| purine ribonucleoside biosynthetic process | GO:0046129 | 31 | 0.035 | |
| regulation of dna templated transcription initiation | GO:2000142 | 19 | 0.035 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.035 | |
| nuclear export | GO:0051168 | 124 | 0.035 | |
| negative regulation of chromosome organization | GO:2001251 | 39 | 0.035 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.035 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.035 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.034 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.033 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.033 | |
| regulation of chromatin silencing | GO:0031935 | 39 | 0.033 | |
| regulation of gene silencing | GO:0060968 | 41 | 0.033 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.032 | |
| chromatin remodeling | GO:0006338 | 80 | 0.032 | |
| cell development | GO:0048468 | 107 | 0.031 | |
| single organism catabolic process | GO:0044712 | 619 | 0.031 | |
| mrna transport | GO:0051028 | 60 | 0.031 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.031 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.030 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.029 | |
| nucleoside biosynthetic process | GO:0009163 | 38 | 0.029 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.027 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.027 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.027 | |
| translational initiation | GO:0006413 | 56 | 0.027 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.026 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.026 | |
| regulation of chromatin modification | GO:1903308 | 23 | 0.026 | |
| detection of stimulus | GO:0051606 | 4 | 0.026 | |
| regulation of chromatin organization | GO:1902275 | 23 | 0.026 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.025 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.025 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.025 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.025 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.024 | |
| regulation of molecular function | GO:0065009 | 320 | 0.024 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.023 | |
| regulation of protein catabolic process | GO:0042176 | 40 | 0.023 | |
| purine ribonucleotide biosynthetic process | GO:0009152 | 39 | 0.023 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.022 | |
| protein catabolic process | GO:0030163 | 221 | 0.022 | |
| regulation of translation | GO:0006417 | 89 | 0.021 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.021 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.021 | |
| dna integrity checkpoint | GO:0031570 | 41 | 0.021 | |
| mrna cleavage | GO:0006379 | 26 | 0.021 | |
| multi organism process | GO:0051704 | 233 | 0.021 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.021 | |
| protein processing | GO:0016485 | 64 | 0.020 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.020 | |
| chromatin modification | GO:0016568 | 200 | 0.020 | |
| cellular response to starvation | GO:0009267 | 90 | 0.020 | |
| transcription elongation from rna polymerase i promoter | GO:0006362 | 10 | 0.020 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.020 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.020 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.020 | |
| ribonucleoside biosynthetic process | GO:0042455 | 37 | 0.020 | |
| response to chemical | GO:0042221 | 390 | 0.020 | |
| cell wall organization | GO:0071555 | 146 | 0.020 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.020 | |
| sporulation | GO:0043934 | 132 | 0.019 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.019 | |
| response to heat | GO:0009408 | 69 | 0.019 | |
| regulation of rna polymerase ii transcriptional preinitiation complex assembly | GO:0045898 | 13 | 0.019 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.019 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.019 | |
| homeostatic process | GO:0042592 | 227 | 0.019 | |
| endocytosis | GO:0006897 | 90 | 0.019 | |
| ribose phosphate biosynthetic process | GO:0046390 | 50 | 0.018 | |
| negative regulation of dna metabolic process | GO:0051053 | 36 | 0.018 | |
| intracellular protein transport | GO:0006886 | 319 | 0.018 | |
| protein modification by small protein removal | GO:0070646 | 29 | 0.018 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.018 | |
| anatomical structure development | GO:0048856 | 160 | 0.018 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.018 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.018 | |
| ribosomal subunit export from nucleus | GO:0000054 | 46 | 0.017 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.017 | |
| protein deubiquitination | GO:0016579 | 17 | 0.017 | |
| histone modification | GO:0016570 | 119 | 0.017 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.017 | |
| invasive growth in response to glucose limitation | GO:0001403 | 61 | 0.017 | |
| regulation of proteolysis | GO:0030162 | 44 | 0.016 | |
| rna localization | GO:0006403 | 112 | 0.016 | |
| snorna processing | GO:0043144 | 34 | 0.016 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.016 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.016 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.016 | |
| amine metabolic process | GO:0009308 | 51 | 0.016 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.016 | |
| cellular component disassembly | GO:0022411 | 86 | 0.016 | |
| response to nutrient levels | GO:0031667 | 150 | 0.016 | |
| reproductive process | GO:0022414 | 248 | 0.016 | |
| response to organonitrogen compound | GO:0010243 | 18 | 0.016 | |
| establishment of ribosome localization | GO:0033753 | 46 | 0.015 | |
| sister chromatid segregation | GO:0000819 | 93 | 0.015 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.015 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.015 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.014 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.014 | |
| nuclear division | GO:0000280 | 263 | 0.014 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.014 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.014 | |
| protein transport | GO:0015031 | 345 | 0.014 | |
| positive regulation of cellular component biogenesis | GO:0044089 | 45 | 0.014 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 16 | 0.014 | |
| protein complex localization | GO:0031503 | 32 | 0.014 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 224 | 0.014 | |
| growth of unicellular organism as a thread of attached cells | GO:0070783 | 105 | 0.014 | |
| organelle fission | GO:0048285 | 272 | 0.014 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.014 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.014 | |
| regulation of proteolysis involved in cellular protein catabolic process | GO:1903050 | 36 | 0.014 | |
| regulation of biological quality | GO:0065008 | 391 | 0.014 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.014 | |
| positive regulation of dna templated transcription initiation | GO:2000144 | 13 | 0.014 | |
| negative regulation of proteolysis involved in cellular protein catabolic process | GO:1903051 | 27 | 0.014 | |
| translesion synthesis | GO:0019985 | 16 | 0.013 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.013 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.013 | |
| cell cycle g2 m phase transition | GO:0044839 | 39 | 0.013 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.013 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.013 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.013 | |
| dna recombination | GO:0006310 | 172 | 0.013 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.013 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.013 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.013 | |
| sexual sporulation | GO:0034293 | 113 | 0.013 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.013 | |
| regulation of chromosome segregation | GO:0051983 | 44 | 0.013 | |
| transposition | GO:0032196 | 20 | 0.013 | |
| regulation of mitosis | GO:0007088 | 65 | 0.013 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.012 | |
| response to nutrient | GO:0007584 | 52 | 0.012 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.012 | |
| chromosome segregation | GO:0007059 | 159 | 0.012 | |
| ascospore wall assembly | GO:0030476 | 52 | 0.012 | |
| coenzyme biosynthetic process | GO:0009108 | 66 | 0.012 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.012 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.012 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.012 | |
| spore wall biogenesis | GO:0070590 | 52 | 0.012 | |
| response to uv | GO:0009411 | 4 | 0.012 | |
| mrna metabolic process | GO:0016071 | 269 | 0.012 | |
| transposition rna mediated | GO:0032197 | 17 | 0.012 | |
| nuclear transcribed mrna poly a tail shortening | GO:0000289 | 14 | 0.012 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.012 | |
| developmental process | GO:0032502 | 261 | 0.012 | |
| protein maturation | GO:0051604 | 76 | 0.012 | |
| macromolecule methylation | GO:0043414 | 85 | 0.011 | |
| cell cycle dna replication | GO:0044786 | 36 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.011 | |
| mitotic spindle checkpoint | GO:0071174 | 34 | 0.011 | |
| negative regulation of protein catabolic process | GO:0042177 | 27 | 0.011 | |
| positive regulation of invasive growth in response to glucose limitation | GO:2000219 | 11 | 0.011 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.011 | |
| regulation of proteasomal protein catabolic process | GO:0061136 | 34 | 0.011 | |
| positive regulation of cellular amine metabolic process | GO:0033240 | 10 | 0.011 | |
| external encapsulating structure organization | GO:0045229 | 146 | 0.011 | |
| histone methylation | GO:0016571 | 28 | 0.011 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.011 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.010 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.010 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.010 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.010 | |
| positive regulation of translation | GO:0045727 | 34 | 0.010 | |
| rrna processing | GO:0006364 | 227 | 0.010 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.010 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.010 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.010 | |
| regulation of chromatin silencing at telomere | GO:0031938 | 27 | 0.010 | |
| regulation of translational initiation | GO:0006446 | 18 | 0.010 | |
