| regulation of protein kinase activity | GO:0045859 | 67 | 0.646 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.576 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.557 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.550 | |
| protein phosphorylation | GO:0006468 | 197 | 0.533 | |
| nuclear transport | GO:0051169 | 165 | 0.488 | |
| regulation of molecular function | GO:0065009 | 320 | 0.453 | |
| cell division | GO:0051301 | 205 | 0.390 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.307 | |
| response to organic substance | GO:0010033 | 182 | 0.260 | |
| nuclear import | GO:0051170 | 57 | 0.257 | |
| budding cell bud growth | GO:0007117 | 29 | 0.241 | |
| phosphorylation | GO:0016310 | 291 | 0.240 | |
| protein targeting to nucleus | GO:0044744 | 57 | 0.232 | |
| peptidyl lysine acetylation | GO:0018394 | 52 | 0.209 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.194 | |
| single organism nuclear import | GO:1902593 | 56 | 0.174 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.173 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.166 | |
| organelle localization | GO:0051640 | 128 | 0.145 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.141 | |
| nuclear division | GO:0000280 | 263 | 0.126 | |
| protein import | GO:0017038 | 122 | 0.126 | |
| organelle fission | GO:0048285 | 272 | 0.117 | |
| growth | GO:0040007 | 157 | 0.112 | |
| nuclear export | GO:0051168 | 124 | 0.110 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.109 | |
| protein catabolic process | GO:0030163 | 221 | 0.109 | |
| ncrna processing | GO:0034470 | 330 | 0.109 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.108 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.108 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.107 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.107 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.105 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.102 | |
| protein import into nucleus | GO:0006606 | 55 | 0.098 | |
| trna processing | GO:0008033 | 101 | 0.095 | |
| regulation of mitosis | GO:0007088 | 65 | 0.093 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.087 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.083 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.083 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.080 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.079 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.077 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.072 | |
| internal protein amino acid acetylation | GO:0006475 | 52 | 0.071 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.070 | |
| cellular response to heat | GO:0034605 | 53 | 0.066 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.065 | |
| growth of unicellular organism as a thread of attached cells | GO:0070783 | 105 | 0.065 | |
| response to chemical | GO:0042221 | 390 | 0.065 | |
| trna metabolic process | GO:0006399 | 151 | 0.064 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.060 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.058 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.057 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.056 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.056 | |
| multi organism process | GO:0051704 | 233 | 0.055 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.054 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.054 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.053 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.050 | |
| asexual reproduction | GO:0019954 | 48 | 0.048 | |
| internal peptidyl lysine acetylation | GO:0018393 | 52 | 0.048 | |
| septin cytoskeleton organization | GO:0032185 | 27 | 0.047 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.046 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.046 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 57 | 0.046 | |
| regulation of protein serine threonine kinase activity | GO:0071900 | 41 | 0.045 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.045 | |
| protein complex disassembly | GO:0043241 | 70 | 0.044 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.044 | |
| regulation of transferase activity | GO:0051338 | 83 | 0.043 | |
| cellular component disassembly | GO:0022411 | 86 | 0.043 | |
| microtubule based process | GO:0007017 | 117 | 0.042 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.040 | |
| cell budding | GO:0007114 | 48 | 0.039 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.038 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.036 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.036 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.035 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.034 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.033 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.033 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.032 | |
| protein dephosphorylation | GO:0006470 | 40 | 0.032 | |
| regulation of kinase activity | GO:0043549 | 71 | 0.032 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.031 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.030 | |
| cellular bud site selection | GO:0000282 | 35 | 0.030 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 63 | 0.029 | |
| regulation of map kinase activity | GO:0043405 | 12 | 0.029 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.029 | Worm |
| regulation of protein polymerization | GO:0032271 | 33 | 0.028 | |
| trna modification | GO:0006400 | 75 | 0.028 | |
| nucleic acid transport | GO:0050657 | 94 | 0.028 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.027 | |
| regulation of exit from mitosis | GO:0007096 | 29 | 0.027 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 68 | 0.027 | |
| protein acylation | GO:0043543 | 66 | 0.027 | |
| regulation of meiosis | GO:0040020 | 42 | 0.027 | |
| negative regulation of cytoskeleton organization | GO:0051494 | 24 | 0.026 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.025 | |
| non recombinational repair | GO:0000726 | 33 | 0.025 | |
| response to heat | GO:0009408 | 69 | 0.025 | |
| rrna containing ribonucleoprotein complex export from nucleus | GO:0071428 | 46 | 0.025 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.025 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.025 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.024 | |
| protein transport | GO:0015031 | 345 | 0.024 | |
| chromatin organization | GO:0006325 | 242 | 0.023 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.023 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.023 | |
| regulation of mapk cascade | GO:0043408 | 22 | 0.023 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.022 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.022 | |
| chromatin assembly or disassembly | GO:0006333 | 60 | 0.022 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.022 | |
| pseudohyphal growth | GO:0007124 | 75 | 0.022 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.022 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.021 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.021 | |
| regulation of cell division | GO:0051302 | 113 | 0.021 | |
| positive regulation of transferase activity | GO:0051347 | 28 | 0.021 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.021 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.021 | |
| proteolysis | GO:0006508 | 268 | 0.020 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.020 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.020 | |
| filamentous growth | GO:0030447 | 124 | 0.020 | |
| septin ring organization | GO:0031106 | 26 | 0.020 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.020 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.019 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.018 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.018 | |
| chromatin modification | GO:0016568 | 200 | 0.018 | |
| positive regulation of protein kinase activity | GO:0045860 | 22 | 0.018 | |
| dna integrity checkpoint | GO:0031570 | 41 | 0.018 | |
| multi organism cellular process | GO:0044764 | 120 | 0.018 | |
| negative regulation of catalytic activity | GO:0043086 | 60 | 0.017 | |
| cellular response to nitrogen compound | GO:1901699 | 14 | 0.017 | |
| organelle assembly | GO:0070925 | 118 | 0.016 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 29 | 0.016 | |
| ribosome localization | GO:0033750 | 46 | 0.016 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.015 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.015 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.015 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.015 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.015 | |
| positive regulation of transcription from rna polymerase ii promoter in response to stress | GO:0036003 | 33 | 0.015 | |
| protein acetylation | GO:0006473 | 59 | 0.015 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.014 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.014 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.014 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.014 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.014 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.013 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.013 | |
| developmental process | GO:0032502 | 261 | 0.013 | Worm |
| establishment of ribosome localization | GO:0033753 | 46 | 0.013 | |
| signal transduction by phosphorylation | GO:0023014 | 31 | 0.013 | |
| regulation of protein localization | GO:0032880 | 62 | 0.013 | |
| positive regulation of nucleocytoplasmic transport | GO:0046824 | 4 | 0.013 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.013 | |
| cellular response to organonitrogen compound | GO:0071417 | 14 | 0.013 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.013 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.013 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.013 | |
| mitotic cytokinesis | GO:0000281 | 58 | 0.013 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.012 | |
| sexual reproduction | GO:0019953 | 216 | 0.012 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.012 | |
| response to osmotic stress | GO:0006970 | 83 | 0.012 | |
| intracellular protein transport | GO:0006886 | 319 | 0.012 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 59 | 0.012 | |
| positive regulation of signal transduction | GO:0009967 | 20 | 0.012 | |
| protein complex assembly | GO:0006461 | 302 | 0.011 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.011 | |
| transposition | GO:0032196 | 20 | 0.011 | |
| gene silencing by rna | GO:0031047 | 3 | 0.011 | Worm |
| positive regulation of intracellular protein transport | GO:0090316 | 3 | 0.011 | |
| protein localization to organelle | GO:0033365 | 337 | 0.011 | |
| osmosensory signaling pathway | GO:0007231 | 22 | 0.011 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.011 | |
| regulation of actin filament length | GO:0030832 | 19 | 0.011 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.011 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.011 | |
| ethanolamine containing compound metabolic process | GO:0042439 | 21 | 0.011 | |
| translational elongation | GO:0006414 | 32 | 0.010 | |
| positive regulation of intracellular transport | GO:0032388 | 4 | 0.010 | |
| conjugation | GO:0000746 | 107 | 0.010 | |
| regulation of transposition | GO:0010528 | 16 | 0.010 | |
| regulation of meiotic cell cycle | GO:0051445 | 43 | 0.010 | |
| translation | GO:0006412 | 230 | 0.010 | |
