| protein transport | GO:0015031 | 345 | 0.512 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.401 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.393 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.314 | |
| regulation of endocytosis | GO:0030100 | 17 | 0.308 | |
| actin filament based process | GO:0030029 | 104 | 0.246 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.209 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.204 | |
| single organism cellular localization | GO:1902580 | 375 | 0.182 | |
| endocytosis | GO:0006897 | 90 | 0.172 | |
| proteolysis | GO:0006508 | 268 | 0.151 | |
| regulation of protein localization | GO:0032880 | 62 | 0.140 | |
| intracellular protein transport | GO:0006886 | 319 | 0.111 | |
| dephosphorylation | GO:0016311 | 127 | 0.108 | |
| regulation of biological quality | GO:0065008 | 391 | 0.094 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.089 | |
| protein targeting | GO:0006605 | 272 | 0.089 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.087 | |
| regulation of molecular function | GO:0065009 | 320 | 0.080 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.071 | |
| single organism developmental process | GO:0044767 | 258 | 0.066 | |
| single organism catabolic process | GO:0044712 | 619 | 0.062 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.056 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.053 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.053 | |
| single organism signaling | GO:0044700 | 208 | 0.051 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.051 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.049 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.047 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.047 | |
| anatomical structure development | GO:0048856 | 160 | 0.045 | |
| cell communication | GO:0007154 | 345 | 0.045 | |
| multi organism process | GO:0051704 | 233 | 0.045 | |
| protein complex assembly | GO:0006461 | 302 | 0.044 | |
| establishment of protein localization | GO:0045184 | 367 | 0.044 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.042 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.042 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.042 | |
| vacuolar transport | GO:0007034 | 145 | 0.042 | |
| regulation of localization | GO:0032879 | 127 | 0.041 | |
| cell division | GO:0051301 | 205 | 0.041 | |
| protein localization to membrane | GO:0072657 | 102 | 0.041 | |
| regulation of receptor mediated endocytosis | GO:0048259 | 4 | 0.040 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.040 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.039 | |
| protein maturation | GO:0051604 | 76 | 0.038 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.037 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.036 | |
| dna replication | GO:0006260 | 147 | 0.036 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.036 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.036 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.036 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.034 | |
| endosomal transport | GO:0016197 | 86 | 0.034 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.034 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.034 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.034 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.033 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.033 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.032 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.031 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.031 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.031 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.030 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.030 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.029 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.028 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.028 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.028 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.027 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.027 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.027 | |
| protein processing | GO:0016485 | 64 | 0.026 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.026 | |
| single organism membrane organization | GO:0044802 | 275 | 0.025 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.025 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.024 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.024 | |
| positive regulation of endocytosis | GO:0045807 | 12 | 0.023 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.023 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.023 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.023 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 101 | 0.023 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.022 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.022 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.022 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.022 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.021 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.021 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.021 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.021 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.020 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.020 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.020 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.020 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.019 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.019 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.019 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.019 | |
| signal transduction | GO:0007165 | 208 | 0.019 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.018 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.018 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.018 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.017 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.017 | |
| mitochondrion organization | GO:0007005 | 261 | 0.017 | |
| cellular developmental process | GO:0048869 | 191 | 0.017 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.017 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.017 | |
| homeostatic process | GO:0042592 | 227 | 0.016 | |
| organelle localization | GO:0051640 | 128 | 0.016 | |
| regulation of cell communication | GO:0010646 | 124 | 0.016 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.016 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.015 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.015 | |
| positive regulation of nucleotide catabolic process | GO:0030813 | 97 | 0.015 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.015 | |
| regulation of signaling | GO:0023051 | 119 | 0.014 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.014 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.014 | |
| response to chemical | GO:0042221 | 390 | 0.014 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.014 | |
| endomembrane system organization | GO:0010256 | 74 | 0.014 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.014 | |
| regulation of nucleoside metabolic process | GO:0009118 | 106 | 0.014 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.013 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.013 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.013 | |
| developmental process | GO:0032502 | 261 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.012 | |
| actin filament organization | GO:0007015 | 56 | 0.012 | |
| positive regulation of intracellular transport | GO:0032388 | 4 | 0.012 | |
| autophagy | GO:0006914 | 106 | 0.012 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 97 | 0.012 | |
| positive regulation of ras gtpase activity | GO:0032320 | 41 | 0.012 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.012 | |
| membrane organization | GO:0061024 | 276 | 0.012 | |
| protein catabolic process | GO:0030163 | 221 | 0.011 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.011 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.011 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.011 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.011 | |
| response to external stimulus | GO:0009605 | 158 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.011 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.011 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.011 | |
| chemical homeostasis | GO:0048878 | 137 | 0.011 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.010 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 4 | 0.010 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.010 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.010 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.010 | |
