| cellular lipid metabolic process | GO:0044255 | 229 | 0.316 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.249 | |
| protein phosphorylation | GO:0006468 | 197 | 0.201 | |
| lipid metabolic process | GO:0006629 | 269 | 0.183 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.172 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.166 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.137 | |
| single organism cellular localization | GO:1902580 | 375 | 0.126 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.120 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.115 | |
| regulation of biological quality | GO:0065008 | 391 | 0.111 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.108 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.107 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.105 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.098 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.095 | |
| cation homeostasis | GO:0055080 | 105 | 0.090 | |
| chemical homeostasis | GO:0048878 | 137 | 0.088 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.080 | |
| establishment of protein localization | GO:0045184 | 367 | 0.074 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.069 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.068 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.063 | |
| filamentous growth of a population of unicellular organisms | GO:0044182 | 109 | 0.061 | |
| protein localization to organelle | GO:0033365 | 337 | 0.061 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.059 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.059 | |
| anion transport | GO:0006820 | 145 | 0.056 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.056 | |
| translation | GO:0006412 | 230 | 0.055 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.054 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.054 | |
| homeostatic process | GO:0042592 | 227 | 0.053 | |
| cellular homeostasis | GO:0019725 | 138 | 0.052 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.052 | |
| response to nutrient levels | GO:0031667 | 150 | 0.050 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.049 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.048 | |
| mitochondrion organization | GO:0007005 | 261 | 0.047 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.047 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.046 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.045 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.045 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.045 | |
| lipid modification | GO:0030258 | 37 | 0.045 | |
| oxidation reduction process | GO:0055114 | 353 | 0.044 | |
| endosomal transport | GO:0016197 | 86 | 0.043 | |
| regulation of cytoskeleton organization | GO:0051493 | 63 | 0.043 | |
| trna metabolic process | GO:0006399 | 151 | 0.043 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.042 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.042 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.042 | |
| phosphatidylinositol metabolic process | GO:0046488 | 62 | 0.041 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.041 | |
| membrane lipid biosynthetic process | GO:0046467 | 54 | 0.038 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.036 | |
| transition metal ion transport | GO:0000041 | 45 | 0.036 | |
| intracellular protein transport | GO:0006886 | 319 | 0.036 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.036 | |
| protein transport | GO:0015031 | 345 | 0.035 | |
| actin filament based process | GO:0030029 | 104 | 0.035 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.035 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.035 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.034 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.034 | |
| ion transport | GO:0006811 | 274 | 0.034 | |
| response to external stimulus | GO:0009605 | 158 | 0.034 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.033 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.032 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.032 | |
| ion homeostasis | GO:0050801 | 118 | 0.032 | |
| regulation of molecular function | GO:0065009 | 320 | 0.031 | |
| cytokinesis | GO:0000910 | 92 | 0.031 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.031 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.031 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.031 | |
| histone modification | GO:0016570 | 119 | 0.030 | |
| membrane lipid metabolic process | GO:0006643 | 67 | 0.029 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.028 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.028 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.028 | |
| protein targeting | GO:0006605 | 272 | 0.027 | |
| response to starvation | GO:0042594 | 96 | 0.027 | |
| response to chemical | GO:0042221 | 390 | 0.027 | |
| regulation of actin filament based process | GO:0032970 | 31 | 0.026 | |
| conjugation | GO:0000746 | 107 | 0.026 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.025 | |
| pseudohyphal growth | GO:0007124 | 75 | 0.025 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.025 | |
| organelle inheritance | GO:0048308 | 51 | 0.025 | |
| chromatin modification | GO:0016568 | 200 | 0.025 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.025 | |
| growth | GO:0040007 | 157 | 0.025 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.025 | |
| single organism catabolic process | GO:0044712 | 619 | 0.025 | |
| glucose transport | GO:0015758 | 23 | 0.024 | |
| liposaccharide metabolic process | GO:1903509 | 31 | 0.024 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.023 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.023 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.022 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.022 | |
| response to osmotic stress | GO:0006970 | 83 | 0.022 | |
| response to organic substance | GO:0010033 | 182 | 0.022 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.022 | |
| regulation of small gtpase mediated signal transduction | GO:0051056 | 47 | 0.022 | |
| monosaccharide transport | GO:0015749 | 24 | 0.022 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.021 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.021 | |
| growth of unicellular organism as a thread of attached cells | GO:0070783 | 105 | 0.021 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.021 | |
| negative regulation of nuclear division | GO:0051784 | 62 | 0.021 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.020 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.020 | |
| single organism signaling | GO:0044700 | 208 | 0.020 | |
| chromatin organization | GO:0006325 | 242 | 0.020 | |
| single organism developmental process | GO:0044767 | 258 | 0.020 | |
| negative regulation of cellular catabolic process | GO:0031330 | 43 | 0.020 | |
| membrane organization | GO:0061024 | 276 | 0.020 | |
| protein complex assembly | GO:0006461 | 302 | 0.020 | |
| endomembrane system organization | GO:0010256 | 74 | 0.020 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.019 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.019 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.019 | |
| cellular protein complex disassembly | GO:0043624 | 42 | 0.018 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.018 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.018 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.018 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 43 | 0.018 | |
| negative regulation of catabolic process | GO:0009895 | 43 | 0.018 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.018 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.018 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.018 | |
| filamentous growth | GO:0030447 | 124 | 0.017 | |
| lipid localization | GO:0010876 | 60 | 0.017 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.017 | |
| protein maturation | GO:0051604 | 76 | 0.017 | |
| multi organism process | GO:0051704 | 233 | 0.017 | |
| multi organism cellular process | GO:0044764 | 120 | 0.017 | |
| response to hypoxia | GO:0001666 | 4 | 0.017 | |
| retrograde transport endosome to golgi | GO:0042147 | 33 | 0.017 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.017 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.016 | |
| response to nutrient | GO:0007584 | 52 | 0.016 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.016 | |
| dephosphorylation | GO:0016311 | 127 | 0.016 | |
| lipoprotein biosynthetic process | GO:0042158 | 40 | 0.016 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.016 | |
| cell division | GO:0051301 | 205 | 0.016 | |
| regulation of actin cytoskeleton organization | GO:0032956 | 31 | 0.015 | |
| regulation of ras gtpase activity | GO:0032318 | 41 | 0.015 | |
| sexual reproduction | GO:0019953 | 216 | 0.015 | |
| single organism membrane organization | GO:0044802 | 275 | 0.015 | |
| gene silencing | GO:0016458 | 151 | 0.015 | |
| chromatin silencing | GO:0006342 | 147 | 0.014 | |
| maintenance of location | GO:0051235 | 66 | 0.014 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.014 | |
| regulation of cell communication | GO:0010646 | 124 | 0.014 | |
| protein complex disassembly | GO:0043241 | 70 | 0.014 | |
| invasive growth in response to glucose limitation | GO:0001403 | 61 | 0.014 | |
| guanosine containing compound catabolic process | GO:1901069 | 109 | 0.013 | |
| organic anion transport | GO:0015711 | 114 | 0.013 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.013 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.013 | |
| regulation of cellular component size | GO:0032535 | 50 | 0.013 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.013 | |
| glycerolipid biosynthetic process | GO:0045017 | 71 | 0.013 | |
| methylation | GO:0032259 | 101 | 0.013 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.013 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.013 | |
| cation transport | GO:0006812 | 166 | 0.013 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.013 | |
| regulation of fatty acid beta oxidation | GO:0031998 | 3 | 0.013 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.013 | |
| protein processing | GO:0016485 | 64 | 0.013 | |
| regulation of ras protein signal transduction | GO:0046578 | 47 | 0.013 | |
| response to monosaccharide | GO:0034284 | 13 | 0.013 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.013 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.013 | |
| regulation of dna templated transcription in response to stress | GO:0043620 | 51 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.012 | |
| amine metabolic process | GO:0009308 | 51 | 0.012 | |
| intracellular ph reduction | GO:0051452 | 16 | 0.012 | |
| nuclear division | GO:0000280 | 263 | 0.012 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.012 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.011 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.011 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.011 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 4 | 0.011 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.011 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.011 | |
| negative regulation of cell division | GO:0051782 | 66 | 0.011 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.011 | |
| organic hydroxy compound transport | GO:0015850 | 41 | 0.011 | |
| regulation of cellular ph | GO:0030641 | 17 | 0.011 | |
| regulation of lipid biosynthetic process | GO:0046890 | 32 | 0.011 | |
| phosphorylation | GO:0016310 | 291 | 0.011 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.010 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.010 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.010 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.010 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.010 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.010 | |
| cellular component disassembly | GO:0022411 | 86 | 0.010 | |
| regulation of carbohydrate biosynthetic process | GO:0043255 | 31 | 0.010 | |
| regulation of lipid catabolic process | GO:0050994 | 4 | 0.010 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.010 | |
