| ion homeostasis | GO:0050801 | 118 | 0.390 | |
| transmembrane transport | GO:0055085 | 349 | 0.366 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.353 | |
| ion transport | GO:0006811 | 274 | 0.300 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.272 | |
| cellular divalent inorganic cation homeostasis | GO:0072503 | 21 | 0.269 | |
| cation homeostasis | GO:0055080 | 105 | 0.262 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.219 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.195 | |
| homeostatic process | GO:0042592 | 227 | 0.186 | |
| chemical homeostasis | GO:0048878 | 137 | 0.182 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.162 | |
| divalent inorganic cation homeostasis | GO:0072507 | 21 | 0.155 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.128 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.123 | |
| vacuolar transport | GO:0007034 | 145 | 0.123 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.113 | |
| establishment of rna localization | GO:0051236 | 92 | 0.100 | |
| cellular homeostasis | GO:0019725 | 138 | 0.100 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.098 | |
| rna transport | GO:0050658 | 92 | 0.097 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.087 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.077 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.076 | |
| nucleic acid transport | GO:0050657 | 94 | 0.073 | |
| rna localization | GO:0006403 | 112 | 0.072 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.072 | |
| protein glycosylation | GO:0006486 | 57 | 0.070 | |
| glycoprotein metabolic process | GO:0009100 | 62 | 0.067 | |
| cation transport | GO:0006812 | 166 | 0.063 | |
| inorganic cation transmembrane transport | GO:0098662 | 98 | 0.059 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.055 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.054 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.053 | |
| protein complex assembly | GO:0006461 | 302 | 0.053 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.051 | |
| vacuole organization | GO:0007033 | 75 | 0.049 | |
| regulation of biological quality | GO:0065008 | 391 | 0.047 | |
| cell communication | GO:0007154 | 345 | 0.047 | |
| organic acid transport | GO:0015849 | 77 | 0.047 | |
| intracellular protein transport | GO:0006886 | 319 | 0.045 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.044 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.043 | |
| hydrogen transport | GO:0006818 | 61 | 0.043 | |
| monovalent inorganic cation transport | GO:0015672 | 78 | 0.042 | |
| regulation of transport | GO:0051049 | 85 | 0.042 | |
| protein processing | GO:0016485 | 64 | 0.041 | |
| glycoprotein biosynthetic process | GO:0009101 | 61 | 0.041 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.041 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.039 | |
| intracellular ph reduction | GO:0051452 | 16 | 0.038 | |
| regulation of cellular ph | GO:0030641 | 17 | 0.038 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.038 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.037 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.037 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.036 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.036 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.035 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.034 | |
| endocytosis | GO:0006897 | 90 | 0.034 | |
| single organism catabolic process | GO:0044712 | 619 | 0.033 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.033 | |
| protein maturation | GO:0051604 | 76 | 0.032 | |
| microautophagy | GO:0016237 | 43 | 0.032 | |
| membrane fusion | GO:0061025 | 73 | 0.031 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.031 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.030 | |
| nuclear export | GO:0051168 | 124 | 0.030 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.027 | |
| single organism developmental process | GO:0044767 | 258 | 0.026 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.026 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.026 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.026 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.026 | |
| detection of stimulus | GO:0051606 | 4 | 0.026 | |
| anion transmembrane transport | GO:0098656 | 79 | 0.026 | |
| gtp metabolic process | GO:0046039 | 107 | 0.026 | |
| cellular iron ion homeostasis | GO:0006879 | 34 | 0.025 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.025 | |
| dna repair | GO:0006281 | 236 | 0.025 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.025 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.024 | |
| monovalent inorganic cation homeostasis | GO:0055067 | 32 | 0.024 | |
| establishment of ribosome localization | GO:0033753 | 46 | 0.024 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.024 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.023 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.023 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.023 | |
| response to hypoxia | GO:0001666 | 4 | 0.023 | |
| regulation of gtpase activity | GO:0043087 | 84 | 0.023 | |
| protein localization to organelle | GO:0033365 | 337 | 0.023 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.022 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.022 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.022 | |
| membrane invagination | GO:0010324 | 43 | 0.022 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.022 | |
| aging | GO:0007568 | 71 | 0.021 | |
| cell growth | GO:0016049 | 89 | 0.020 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.020 | |
| organelle inheritance | GO:0048308 | 51 | 0.019 | |
| polyphosphate metabolic process | GO:0006797 | 12 | 0.019 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.019 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.019 | |
| single organism membrane organization | GO:0044802 | 275 | 0.019 | |
| monocarboxylic acid transport | GO:0015718 | 24 | 0.018 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.018 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.018 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.018 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.018 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.018 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.018 | |
| nuclear transport | GO:0051169 | 165 | 0.018 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.017 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.017 | |
| cellular response to endogenous stimulus | GO:0071495 | 22 | 0.017 | |
| cellular response to hypoxia | GO:0071456 | 4 | 0.017 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.017 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.017 | |
| establishment of protein localization | GO:0045184 | 367 | 0.016 | |
| reproductive process | GO:0022414 | 248 | 0.016 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.016 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.016 | |
| regulation of response to stress | GO:0080134 | 57 | 0.016 | |
| single organism signaling | GO:0044700 | 208 | 0.016 | |
| regulation of ph | GO:0006885 | 21 | 0.016 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.016 | |
| regulation of localization | GO:0032879 | 127 | 0.016 | |
| carboxylic acid transport | GO:0046942 | 74 | 0.015 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.015 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.015 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.015 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.015 | |
| response to chemical | GO:0042221 | 390 | 0.015 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.014 | |
| protein catabolic process | GO:0030163 | 221 | 0.014 | |
| single organism membrane invagination | GO:1902534 | 43 | 0.014 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.014 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 97 | 0.014 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.014 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.014 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.014 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.014 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.014 | |
| glycosylation | GO:0070085 | 66 | 0.013 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.013 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.013 | |
| translational elongation | GO:0006414 | 32 | 0.013 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.013 | |
| guanosine containing compound catabolic process | GO:1901069 | 109 | 0.013 | |
| response to salt stress | GO:0009651 | 34 | 0.013 | |
| ascospore formation | GO:0030437 | 107 | 0.013 | |
| chromatin organization | GO:0006325 | 242 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.013 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 106 | 0.013 | |
| chromatin modification | GO:0016568 | 200 | 0.013 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.012 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.012 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.012 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.012 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.012 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.012 | |
| response to inorganic substance | GO:0010035 | 47 | 0.012 | |
| signal transduction | GO:0007165 | 208 | 0.012 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.012 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.011 | |
| single organism cellular localization | GO:1902580 | 375 | 0.011 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.011 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.011 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.011 | |
| anion transport | GO:0006820 | 145 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| ribonucleoprotein complex export from nucleus | GO:0071426 | 46 | 0.011 | |
| signaling | GO:0023052 | 208 | 0.011 | |
| monosaccharide metabolic process | GO:0005996 | 83 | 0.010 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.010 | |
| endosomal transport | GO:0016197 | 86 | 0.010 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.010 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.010 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.010 | |
| organelle assembly | GO:0070925 | 118 | 0.010 | |
