| vacuolar transport | GO:0007034 | 145 | 0.308 | |
| glycosylation | GO:0070085 | 66 | 0.188 | |
| transmembrane transport | GO:0055085 | 349 | 0.177 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.123 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.111 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.100 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.098 | |
| cellular homeostasis | GO:0019725 | 138 | 0.092 | |
| regulation of biological quality | GO:0065008 | 391 | 0.092 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.080 | |
| homeostatic process | GO:0042592 | 227 | 0.074 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.071 | |
| rna localization | GO:0006403 | 112 | 0.065 | |
| protein glycosylation | GO:0006486 | 57 | 0.053 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.053 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.052 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.050 | |
| chemical homeostasis | GO:0048878 | 137 | 0.050 | |
| vacuole organization | GO:0007033 | 75 | 0.049 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.048 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.047 | |
| ion homeostasis | GO:0050801 | 118 | 0.046 | |
| glycoprotein biosynthetic process | GO:0009101 | 61 | 0.046 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.042 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.038 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.036 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.035 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.035 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.034 | |
| rna transport | GO:0050658 | 92 | 0.032 | |
| single organism catabolic process | GO:0044712 | 619 | 0.031 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.030 | |
| establishment of rna localization | GO:0051236 | 92 | 0.030 | |
| developmental process | GO:0032502 | 261 | 0.029 | |
| nucleic acid transport | GO:0050657 | 94 | 0.028 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.027 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.027 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.026 | |
| translation | GO:0006412 | 230 | 0.026 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.026 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.026 | |
| protein complex assembly | GO:0006461 | 302 | 0.025 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.025 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.025 | |
| endosomal transport | GO:0016197 | 86 | 0.025 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.025 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.024 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.024 | |
| single organism developmental process | GO:0044767 | 258 | 0.023 | |
| cation homeostasis | GO:0055080 | 105 | 0.021 | |
| vacuole fusion | GO:0097576 | 40 | 0.020 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.020 | |
| ncrna processing | GO:0034470 | 330 | 0.020 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.019 | |
| proton transporting two sector atpase complex assembly | GO:0070071 | 15 | 0.019 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.018 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.018 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.018 | |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.018 | |
| membrane fusion | GO:0061025 | 73 | 0.017 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.017 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.017 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.016 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.015 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.015 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.015 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.015 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.015 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.014 | |
| macromolecule glycosylation | GO:0043413 | 57 | 0.014 | |
| organelle fusion | GO:0048284 | 85 | 0.014 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.013 | |
| protein catabolic process | GO:0030163 | 221 | 0.013 | |
| regulation of carbohydrate metabolic process | GO:0006109 | 43 | 0.013 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.013 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.012 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.012 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.012 | |
| cell communication | GO:0007154 | 345 | 0.012 | |
| phosphorylation | GO:0016310 | 291 | 0.012 | |
| mrna catabolic process | GO:0006402 | 93 | 0.012 | |
| regulation of cellular carbohydrate metabolic process | GO:0010675 | 41 | 0.012 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.012 | |
| regulation of localization | GO:0032879 | 127 | 0.012 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.012 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.011 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.011 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.011 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.011 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.011 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.011 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.011 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.011 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.011 | |
| growth | GO:0040007 | 157 | 0.011 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.011 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.011 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.011 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.011 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.010 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.010 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.010 | |
