| intracellular protein transmembrane transport | GO:0065002 | 80 | 0.966 | |
| protein localization to mitochondrion | GO:0070585 | 63 | 0.941 | |
| single organism cellular localization | GO:1902580 | 375 | 0.933 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.893 | |
| protein transmembrane transport | GO:0071806 | 82 | 0.875 | |
| mitochondrion organization | GO:0007005 | 261 | 0.867 | |
| intracellular protein transmembrane import | GO:0044743 | 67 | 0.850 | |
| protein transport | GO:0015031 | 345 | 0.805 | |
| establishment of protein localization | GO:0045184 | 367 | 0.733 | |
| protein targeting | GO:0006605 | 272 | 0.676 | |
| protein targeting to mitochondrion | GO:0006626 | 56 | 0.648 | |
| establishment of protein localization to mitochondrion | GO:0072655 | 63 | 0.577 | |
| intracellular protein transport | GO:0006886 | 319 | 0.314 | |
| protein localization to organelle | GO:0033365 | 337 | 0.299 | |
| protein import | GO:0017038 | 122 | 0.233 | |
| membrane organization | GO:0061024 | 276 | 0.201 | |
| translation | GO:0006412 | 230 | 0.169 | |
| developmental process | GO:0032502 | 261 | 0.158 | |
| protein import into mitochondrial matrix | GO:0030150 | 20 | 0.156 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.150 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.142 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.123 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.121 | |
| single organism membrane organization | GO:0044802 | 275 | 0.111 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.097 | |
| cellular developmental process | GO:0048869 | 191 | 0.090 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.088 | |
| response to chemical | GO:0042221 | 390 | 0.085 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.077 | |
| sporulation | GO:0043934 | 132 | 0.074 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.073 | |
| mitochondrial transport | GO:0006839 | 76 | 0.066 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.065 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.063 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.062 | |
| anatomical structure development | GO:0048856 | 160 | 0.061 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.060 | |
| mitochondrial membrane organization | GO:0007006 | 48 | 0.060 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.059 | |
| transmembrane transport | GO:0055085 | 349 | 0.057 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.055 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.055 | |
| microtubule based process | GO:0007017 | 117 | 0.055 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.052 | |
| protein complex assembly | GO:0006461 | 302 | 0.048 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.047 | |
| single organism developmental process | GO:0044767 | 258 | 0.045 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.043 | |
| translational initiation | GO:0006413 | 56 | 0.043 | |
| protein localization to membrane | GO:0072657 | 102 | 0.042 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.040 | |
| rrna metabolic process | GO:0016072 | 244 | 0.039 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.038 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.037 | |
| rna catabolic process | GO:0006401 | 118 | 0.036 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.036 | |
| response to oxidative stress | GO:0006979 | 99 | 0.036 | |
| regulation of biological quality | GO:0065008 | 391 | 0.035 | |
| cation homeostasis | GO:0055080 | 105 | 0.034 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.034 | |
| cell differentiation | GO:0030154 | 161 | 0.034 | |
| cellular component disassembly | GO:0022411 | 86 | 0.033 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.031 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.031 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.031 | |
| nuclear division | GO:0000280 | 263 | 0.030 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.030 | |
| regulation of translation | GO:0006417 | 89 | 0.029 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.029 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.029 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.029 | |
| response to heat | GO:0009408 | 69 | 0.028 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.028 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.027 | |
| autophagy | GO:0006914 | 106 | 0.026 | |
| ion homeostasis | GO:0050801 | 118 | 0.026 | |
| cell development | GO:0048468 | 107 | 0.026 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.026 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.026 | |
| single organism catabolic process | GO:0044712 | 619 | 0.026 | |
| cellular iron ion homeostasis | GO:0006879 | 34 | 0.025 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.024 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.023 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.023 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.022 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.022 | |
| vacuolar transport | GO:0007034 | 145 | 0.022 | |
| endomembrane system organization | GO:0010256 | 74 | 0.021 | |
| cellular homeostasis | GO:0019725 | 138 | 0.021 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.021 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.021 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.020 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.020 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.019 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.019 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.019 | |
| phosphorylation | GO:0016310 | 291 | 0.019 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.019 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.018 | |
| cellular response to oxidative stress | GO:0034599 | 94 | 0.018 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.018 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.018 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.018 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.018 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.018 | |
| sexual sporulation | GO:0034293 | 113 | 0.018 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.018 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.018 | |
| positive regulation of translation | GO:0045727 | 34 | 0.017 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.017 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.017 | |
| endoplasmic reticulum organization | GO:0007029 | 30 | 0.017 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.017 | |
| growth | GO:0040007 | 157 | 0.016 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.016 | |
| multi organism process | GO:0051704 | 233 | 0.016 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.015 | |
| atp metabolic process | GO:0046034 | 251 | 0.015 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.015 | |
| establishment of protein localization to mitochondrial membrane | GO:0090151 | 20 | 0.015 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.015 | |
| maintenance of location | GO:0051235 | 66 | 0.015 | |
| iron ion homeostasis | GO:0055072 | 34 | 0.015 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.015 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.014 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.014 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.013 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.013 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.013 | |
| signal transduction | GO:0007165 | 208 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.013 | |
| nuclear transcribed mrna poly a tail shortening | GO:0000289 | 14 | 0.013 | |
| filamentous growth | GO:0030447 | 124 | 0.013 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.013 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.012 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.012 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.012 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.012 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.012 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.012 | |
| organelle fission | GO:0048285 | 272 | 0.011 | |
| regulation of translational initiation | GO:0006446 | 18 | 0.011 | |
| cell communication | GO:0007154 | 345 | 0.011 | |
| cytokinesis | GO:0000910 | 92 | 0.011 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.011 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.011 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.011 | |
| protein localization to endoplasmic reticulum | GO:0070972 | 47 | 0.011 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.011 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.010 | |
| regulation of molecular function | GO:0065009 | 320 | 0.010 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.010 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.010 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.010 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.010 | |
| dephosphorylation | GO:0016311 | 127 | 0.010 | |