| histone modification | GO:0016570 | 119 | 0.978 | |
| chromatin modification | GO:0016568 | 200 | 0.964 | |
| protein acylation | GO:0043543 | 66 | 0.956 | |
| dna repair | GO:0006281 | 236 | 0.942 | |
| histone acetylation | GO:0016573 | 51 | 0.933 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.924 | |
| chromatin organization | GO:0006325 | 242 | 0.911 | |
| histone exchange | GO:0043486 | 18 | 0.907 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.901 | |
| peptidyl lysine acetylation | GO:0018394 | 52 | 0.898 | |
| atp dependent chromatin remodeling | GO:0043044 | 36 | 0.843 | |
| chromatin remodeling | GO:0006338 | 80 | 0.832 | |
| internal peptidyl lysine acetylation | GO:0018393 | 52 | 0.828 | |
| internal protein amino acid acetylation | GO:0006475 | 52 | 0.817 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.749 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.737 | |
| nucleosome organization | GO:0034728 | 63 | 0.663 | |
| protein acetylation | GO:0006473 | 59 | 0.609 | |
| double strand break repair | GO:0006302 | 105 | 0.387 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.308 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.285 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.248 | |
| microtubule based process | GO:0007017 | 117 | 0.241 | |
| histone deacetylation | GO:0016575 | 26 | 0.216 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.208 | |
| chromatin silencing | GO:0006342 | 147 | 0.196 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.185 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.183 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.179 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.167 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.159 | |
| single organism catabolic process | GO:0044712 | 619 | 0.155 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.151 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.149 | |
| developmental process | GO:0032502 | 261 | 0.144 | |
| cellular developmental process | GO:0048869 | 191 | 0.142 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.142 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.124 | |
| signaling | GO:0023052 | 208 | 0.121 | |
| protein complex assembly | GO:0006461 | 302 | 0.116 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.104 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.103 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.094 | |
| regulation of cell communication | GO:0010646 | 124 | 0.092 | |
| regulation of chromatin silencing | GO:0031935 | 39 | 0.087 | |
| single organism developmental process | GO:0044767 | 258 | 0.083 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.081 | |
| response to starvation | GO:0042594 | 96 | 0.080 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.080 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.077 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.076 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.075 | |
| anatomical structure development | GO:0048856 | 160 | 0.075 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.070 | |
| chromatin silencing at silent mating type cassette | GO:0030466 | 53 | 0.070 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.067 | |
| response to chemical | GO:0042221 | 390 | 0.065 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.064 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.063 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.060 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.059 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.058 | |
| response to organic substance | GO:0010033 | 182 | 0.056 | |
| nuclear import | GO:0051170 | 57 | 0.056 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.053 | |
| gene silencing | GO:0016458 | 151 | 0.048 | |
| response to oxidative stress | GO:0006979 | 99 | 0.048 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.047 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.047 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.046 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.046 | |
| single organism signaling | GO:0044700 | 208 | 0.046 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.045 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.044 | |
| positive regulation of cell communication | GO:0010647 | 28 | 0.044 | |
| positive regulation of response to stimulus | GO:0048584 | 37 | 0.043 | |
| regulation of histone exchange | GO:1900049 | 4 | 0.043 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.043 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.043 | |
| establishment of protein localization | GO:0045184 | 367 | 0.043 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.043 | |
| cellular response to starvation | GO:0009267 | 90 | 0.042 | |
| protein targeting to nucleus | GO:0044744 | 57 | 0.042 | |
| double strand break repair via nonhomologous end joining | GO:0006303 | 27 | 0.042 | |
| non recombinational repair | GO:0000726 | 33 | 0.041 | |
| alpha amino acid metabolic process | GO:1901605 | 124 | 0.041 | |
| endocytosis | GO:0006897 | 90 | 0.041 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.041 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.040 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.039 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.039 | |
| regulation of mitotic sister chromatid segregation | GO:0033047 | 30 | 0.039 | |
| cell fate commitment | GO:0045165 | 32 | 0.039 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.038 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.038 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.038 | |
| nuclear transport | GO:0051169 | 165 | 0.036 | |
| sex determination | GO:0007530 | 32 | 0.036 | |
| cell communication | GO:0007154 | 345 | 0.036 | |
| rrna metabolic process | GO:0016072 | 244 | 0.036 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.035 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.035 | |
| signal transduction | GO:0007165 | 208 | 0.035 | |
| autophagy | GO:0006914 | 106 | 0.035 | |
| response to nutrient levels | GO:0031667 | 150 | 0.034 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.034 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.034 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.034 | |
| growth | GO:0040007 | 157 | 0.033 | |
| regulation of biological quality | GO:0065008 | 391 | 0.033 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.032 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.032 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.032 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.031 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.029 | |
| protein complex disassembly | GO:0043241 | 70 | 0.029 | |
| histone h3 acetylation | GO:0043966 | 5 | 0.028 | |
| regulation of mitotic sister chromatid separation | GO:0010965 | 29 | 0.028 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.028 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.028 | |
| regulation of gene silencing | GO:0060968 | 41 | 0.027 | |
| actin filament based process | GO:0030029 | 104 | 0.027 | |
| ion transport | GO:0006811 | 274 | 0.026 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.026 | |
| homeostatic process | GO:0042592 | 227 | 0.026 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.026 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.025 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.025 | |
| regulation of autophagy | GO:0010506 | 18 | 0.025 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.025 | |
| regulation of chromatin silencing at silent mating type cassette | GO:0090054 | 13 | 0.025 | |
| regulation of transcription by chromatin organization | GO:0034401 | 19 | 0.025 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.025 | |
| negative regulation of chromatin silencing | GO:0031936 | 25 | 0.024 | |
| dna dependent dna replication | GO:0006261 | 115 | 0.024 | |
| protein deacetylation | GO:0006476 | 26 | 0.023 | |
| protein transport | GO:0015031 | 345 | 0.023 | |
| proteolysis | GO:0006508 | 268 | 0.023 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.023 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.023 | |
| regulation of transcription factor import into nucleus | GO:0042990 | 4 | 0.023 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.023 | |
| aging | GO:0007568 | 71 | 0.023 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.023 | |
| regulation of signaling | GO:0023051 | 119 | 0.022 | |
| macroautophagy | GO:0016236 | 55 | 0.022 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.022 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.022 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.021 | |
| chromosome separation | GO:0051304 | 33 | 0.021 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.021 | |
| positive regulation of protein localization to nucleus | GO:1900182 | 7 | 0.021 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.021 | |
| chromatin disassembly | GO:0031498 | 19 | 0.021 | |
| macromolecule deacylation | GO:0098732 | 27 | 0.021 | |
| regulation of macroautophagy | GO:0016241 | 15 | 0.021 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.021 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.021 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.021 | |
| regulation of dna replication | GO:0006275 | 51 | 0.020 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.020 | |
| microtubule organizing center organization | GO:0031023 | 33 | 0.020 | |
| ascospore formation | GO:0030437 | 107 | 0.020 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.019 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.019 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.019 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.019 | |
| negative regulation of cell cycle process | GO:0010948 | 86 | 0.018 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.018 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.018 | |
| oxidation reduction process | GO:0055114 | 353 | 0.018 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.018 | |
| regulation of response to stress | GO:0080134 | 57 | 0.018 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.017 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.017 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.017 | |
| positive regulation of signaling | GO:0023056 | 20 | 0.017 | |
| maintenance of protein location | GO:0045185 | 53 | 0.017 | |
| negative regulation of cellular response to alkaline ph by negative regulation of transcription from rna polymerase ii promoter | GO:1900463 | 1 | 0.017 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.017 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.017 | |
| regulation of chromatin organization | GO:1902275 | 23 | 0.017 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.017 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.017 | |
| positive regulation of cellular response to drug | GO:2001040 | 3 | 0.016 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.016 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.016 | |
| organic acid catabolic process | GO:0016054 | 71 | 0.016 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.016 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.016 | |
| membrane docking | GO:0022406 | 22 | 0.016 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.016 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.016 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.016 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.016 | |
| double strand break repair via homologous recombination | GO:0000724 | 54 | 0.016 | |
| protein import into nucleus | GO:0006606 | 55 | 0.016 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.016 | |
| protein import | GO:0017038 | 122 | 0.016 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.015 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.015 | |
| recombinational repair | GO:0000725 | 64 | 0.015 | |
| regulation of dna dependent dna replication | GO:0090329 | 37 | 0.015 | |
| positive regulation of transcription on exit from mitosis | GO:0007072 | 1 | 0.015 | |
| cell differentiation | GO:0030154 | 161 | 0.015 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.015 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.015 | |
| protein modification by small protein removal | GO:0070646 | 29 | 0.015 | |
| positive regulation of intracellular protein transport | GO:0090316 | 3 | 0.015 | |
| negative regulation of chromatin silencing at telomere | GO:0031939 | 15 | 0.015 | |
| sexual reproduction | GO:0019953 | 216 | 0.015 | |
| mitochondrion organization | GO:0007005 | 261 | 0.014 | |
| sporulation | GO:0043934 | 132 | 0.014 | |
| surface biofilm formation | GO:0090604 | 3 | 0.014 | |
| dna replication initiation | GO:0006270 | 48 | 0.014 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.014 | |
| protein deacylation | GO:0035601 | 27 | 0.014 | |
| regulation of nucleoside metabolic process | GO:0009118 | 106 | 0.014 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.014 | |
| heterochromatin organization | GO:0070828 | 11 | 0.014 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.014 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.014 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.014 | |
| transfer rna gene mediated silencing | GO:0061587 | 14 | 0.013 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.013 | |
| metaphase anaphase transition of cell cycle | GO:0044784 | 28 | 0.013 | |
| single organism reproductive process | GO:0044702 | 159 | 0.013 | |
| positive regulation of signal transduction | GO:0009967 | 20 | 0.013 | |
| regulation of response to nutrient levels | GO:0032107 | 20 | 0.013 | |
| lipid metabolic process | GO:0006629 | 269 | 0.013 | |
| protein localization to chromosome | GO:0034502 | 28 | 0.013 | |
| mating type switching | GO:0007533 | 28 | 0.012 | |
| chemical homeostasis | GO:0048878 | 137 | 0.012 | |
| conjugation | GO:0000746 | 107 | 0.012 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.012 | |
| protein deubiquitination | GO:0016579 | 17 | 0.012 | |
| positive regulation of transcription by oleic acid | GO:0061421 | 4 | 0.012 | |
| regulation of chromatin silencing at telomere | GO:0031938 | 27 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.012 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.012 | |
| positive regulation of transport | GO:0051050 | 32 | 0.012 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.012 | |
| single organism nuclear import | GO:1902593 | 56 | 0.012 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 68 | 0.012 | |
| nuclear export | GO:0051168 | 124 | 0.012 | |
| positive regulation of translation | GO:0045727 | 34 | 0.012 | |
| positive regulation of ethanol catabolic process | GO:1900066 | 1 | 0.012 | |
| negative regulation of cell division | GO:0051782 | 66 | 0.012 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.012 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 97 | 0.012 | |
| regulation of response to extracellular stimulus | GO:0032104 | 20 | 0.012 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.012 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.011 | |
| regulation of intracellular transport | GO:0032386 | 26 | 0.011 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.011 | |
| trna metabolic process | GO:0006399 | 151 | 0.011 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.011 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.011 | |
| replicative cell aging | GO:0001302 | 46 | 0.011 | |
| regulation of molecular function | GO:0065009 | 320 | 0.011 | |
| cell death | GO:0008219 | 30 | 0.011 | |
| intracellular protein transport | GO:0006886 | 319 | 0.011 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.011 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.011 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 224 | 0.011 | |
| regulation of developmental process | GO:0050793 | 30 | 0.011 | |
| cell aging | GO:0007569 | 70 | 0.011 | |
| regulation of protein import into nucleus | GO:0042306 | 10 | 0.011 | |
| regulation of protein targeting | GO:1903533 | 10 | 0.011 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.011 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.010 | |
| maintenance of location | GO:0051235 | 66 | 0.010 | |
| negative regulation of gene silencing | GO:0060969 | 27 | 0.010 | |
| positive regulation of sulfite transport by positive regulation of transcription from rna polymerase ii promoter | GO:0061426 | 1 | 0.010 | |
| cytokinesis | GO:0000910 | 92 | 0.010 | |
| positive regulation of macroautophagy | GO:0016239 | 8 | 0.010 | |
| cell division | GO:0051301 | 205 | 0.010 | |
| multi organism process | GO:0051704 | 233 | 0.010 | |
| negative regulation of cellular hyperosmotic salinity response by negative regulation of transcription from rna polymerase ii promoter | GO:1900464 | 2 | 0.010 | |
| acetate biosynthetic process | GO:0019413 | 4 | 0.010 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.010 | |
| organelle inheritance | GO:0048308 | 51 | 0.010 | |