| vacuolar transport | GO:0007034 | 145 | 0.823 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.380 | |
| endosomal transport | GO:0016197 | 86 | 0.312 | |
| single organism membrane organization | GO:0044802 | 275 | 0.210 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.177 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.172 | |
| endomembrane system organization | GO:0010256 | 74 | 0.137 | |
| vesicle organization | GO:0016050 | 68 | 0.105 | |
| developmental process | GO:0032502 | 261 | 0.104 | |
| protein localization to organelle | GO:0033365 | 337 | 0.096 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.092 | |
| membrane organization | GO:0061024 | 276 | 0.085 | |
| cell differentiation | GO:0030154 | 161 | 0.084 | |
| golgi to vacuole transport | GO:0006896 | 23 | 0.083 | |
| single organism cellular localization | GO:1902580 | 375 | 0.071 | |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.065 | |
| regulation of localization | GO:0032879 | 127 | 0.060 | |
| cellular developmental process | GO:0048869 | 191 | 0.056 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.053 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.052 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.048 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.047 | |
| intracellular protein transport | GO:0006886 | 319 | 0.046 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 27 | 0.044 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.041 | |
| single organism developmental process | GO:0044767 | 258 | 0.041 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.040 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.038 | |
| response to chemical | GO:0042221 | 390 | 0.038 | |
| regulation of biological quality | GO:0065008 | 391 | 0.037 | |
| signaling | GO:0023052 | 208 | 0.036 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.036 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.034 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.033 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.032 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.032 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.031 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.031 | |
| protein targeting | GO:0006605 | 272 | 0.030 | |
| protein complex assembly | GO:0006461 | 302 | 0.030 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.030 | |
| establishment of protein localization | GO:0045184 | 367 | 0.029 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.028 | |
| cell communication | GO:0007154 | 345 | 0.027 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.026 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.025 | |
| organelle fission | GO:0048285 | 272 | 0.024 | |
| membrane budding | GO:0006900 | 22 | 0.024 | |
| single organism membrane budding | GO:1902591 | 21 | 0.024 | |
| anatomical structure development | GO:0048856 | 160 | 0.024 | |
| protein localization to plasma membrane | GO:0072659 | 18 | 0.023 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.023 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.023 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.023 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.023 | |
| rrna processing | GO:0006364 | 227 | 0.022 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.022 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.022 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.021 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.021 | |
| rrna metabolic process | GO:0016072 | 244 | 0.021 | |
| protein transport | GO:0015031 | 345 | 0.020 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.020 | |
| plasma membrane organization | GO:0007009 | 21 | 0.020 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.019 | |
| regulation of cell division | GO:0051302 | 113 | 0.019 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 73 | 0.019 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.019 | |
| regulation of signaling | GO:0023051 | 119 | 0.019 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.019 | |
| localization within membrane | GO:0051668 | 29 | 0.019 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.018 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.018 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.018 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.017 | |
| protein localization to membrane | GO:0072657 | 102 | 0.017 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.017 | |
| regulation of intracellular transport | GO:0032386 | 26 | 0.017 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.017 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.017 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.017 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.016 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.016 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.016 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.016 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.016 | |
| organelle fusion | GO:0048284 | 85 | 0.016 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.016 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.016 | |
| dna recombination | GO:0006310 | 172 | 0.015 | |
| nuclear export | GO:0051168 | 124 | 0.015 | |
| glycolipid metabolic process | GO:0006664 | 31 | 0.015 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.015 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.015 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.015 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.015 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.015 | |
| negative regulation of response to stimulus | GO:0048585 | 40 | 0.014 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.014 | |
| single organism signaling | GO:0044700 | 208 | 0.014 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.014 | |
| golgi to endosome transport | GO:0006895 | 17 | 0.014 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.014 | |
| protein dna complex assembly | GO:0065004 | 105 | 0.013 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.013 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.013 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.013 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.013 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.013 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.013 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.013 | |
| organelle assembly | GO:0070925 | 118 | 0.013 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.012 | |
| vacuole organization | GO:0007033 | 75 | 0.012 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.012 | |
| chemical homeostasis | GO:0048878 | 137 | 0.012 | |
| cation homeostasis | GO:0055080 | 105 | 0.012 | |
| oxidation reduction process | GO:0055114 | 353 | 0.012 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.012 | |
| ncrna processing | GO:0034470 | 330 | 0.012 | |
| intralumenal vesicle formation | GO:0070676 | 7 | 0.012 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.012 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.012 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.012 | |
| regulation of protein localization | GO:0032880 | 62 | 0.012 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.011 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.011 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.011 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.011 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.011 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.011 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.011 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.011 | |
| ion transport | GO:0006811 | 274 | 0.011 | |
| methylation | GO:0032259 | 101 | 0.011 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.011 | |
| sterol transport | GO:0015918 | 24 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.011 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.011 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.011 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.011 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.011 | |
| response to external stimulus | GO:0009605 | 158 | 0.011 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.010 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.010 | |
| maturation of ssu rrna | GO:0030490 | 105 | 0.010 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.010 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.010 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.010 | |
