| vesicle mediated transport | GO:0016192 | 335 | 0.984 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.857 | |
| endosomal transport | GO:0016197 | 86 | 0.806 | |
| regulation of endocytosis | GO:0030100 | 17 | 0.759 | |
| intracellular protein transport | GO:0006886 | 319 | 0.529 | |
| establishment of protein localization | GO:0045184 | 367 | 0.483 | Human |
| endocytosis | GO:0006897 | 90 | 0.429 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.417 | |
| positive regulation of endocytosis | GO:0045807 | 12 | 0.416 | |
| protein transport | GO:0015031 | 345 | 0.382 | Human |
| organophosphate metabolic process | GO:0019637 | 597 | 0.312 | |
| single organism cellular localization | GO:1902580 | 375 | 0.303 | Human |
| cellular carbohydrate metabolic process | GO:0044262 | 135 | 0.302 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.275 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.244 | Human |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.222 | Human |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.220 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.220 | |
| regulation of molecular function | GO:0065009 | 320 | 0.217 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.206 | |
| protein localization to organelle | GO:0033365 | 337 | 0.204 | |
| golgi to endosome transport | GO:0006895 | 17 | 0.188 | |
| regulation of receptor mediated endocytosis | GO:0048259 | 4 | 0.178 | |
| single organism signaling | GO:0044700 | 208 | 0.151 | |
| protein targeting | GO:0006605 | 272 | 0.151 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.148 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.147 | |
| vacuolar transport | GO:0007034 | 145 | 0.147 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.137 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.135 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.129 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.128 | |
| golgi to vacuole transport | GO:0006896 | 23 | 0.126 | |
| protein processing | GO:0016485 | 64 | 0.124 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.118 | |
| regulation of localization | GO:0032879 | 127 | 0.116 | Human |
| single organism catabolic process | GO:0044712 | 619 | 0.113 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.110 | |
| cell differentiation | GO:0030154 | 161 | 0.108 | Human |
| mitochondrion organization | GO:0007005 | 261 | 0.108 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.107 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.104 | |
| regulation of transport | GO:0051049 | 85 | 0.104 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.103 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.102 | |
| regulation of cell communication | GO:0010646 | 124 | 0.094 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.094 | |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.093 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.091 | |
| retrograde transport endosome to golgi | GO:0042147 | 33 | 0.090 | |
| organelle assembly | GO:0070925 | 118 | 0.089 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.089 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.087 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.086 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.084 | Human |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.084 | |
| protein phosphorylation | GO:0006468 | 197 | 0.082 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.082 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.078 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.076 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.073 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.073 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.072 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.070 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.070 | |
| positive regulation of gtpase activity | GO:0043547 | 80 | 0.067 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.066 | |
| cell division | GO:0051301 | 205 | 0.063 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.062 | |
| positive regulation of hydrolase activity | GO:0051345 | 112 | 0.062 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.062 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.061 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.060 | |
| regulation of biological quality | GO:0065008 | 391 | 0.059 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.059 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.057 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.055 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.055 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.052 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.052 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.052 | |
| organelle localization | GO:0051640 | 128 | 0.051 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.051 | Human |
| negative regulation of cell communication | GO:0010648 | 33 | 0.050 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.050 | |
| protein maturation | GO:0051604 | 76 | 0.049 | |
| membrane organization | GO:0061024 | 276 | 0.048 | Human |
| gtp metabolic process | GO:0046039 | 107 | 0.048 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.047 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.047 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.047 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.047 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.046 | |
| alcohol metabolic process | GO:0006066 | 112 | 0.046 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.046 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.045 | |
| regulation of signaling | GO:0023051 | 119 | 0.045 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.045 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.044 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.044 | |
| signaling | GO:0023052 | 208 | 0.043 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.042 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.042 | |
| positive regulation of purine nucleotide metabolic process | GO:1900544 | 100 | 0.041 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.041 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.040 | |
| phosphorylation | GO:0016310 | 291 | 0.040 | |
| establishment of cell polarity | GO:0030010 | 64 | 0.039 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.038 | |
| mitochondrion localization | GO:0051646 | 29 | 0.038 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.036 | |
| positive regulation of nucleoside metabolic process | GO:0045979 | 97 | 0.035 | |
| response to chemical | GO:0042221 | 390 | 0.034 | |
| phosphatidylinositol metabolic process | GO:0046488 | 62 | 0.034 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.034 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.033 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.031 | |
| positive regulation of purine nucleotide catabolic process | GO:0033123 | 97 | 0.031 | |
| sexual sporulation resulting in formation of a cellular spore | GO:0043935 | 113 | 0.031 | |
| reproductive process | GO:0022414 | 248 | 0.030 | |
| membrane budding | GO:0006900 | 22 | 0.030 | |
| regulation of mitotic cell cycle phase transition | GO:1901990 | 68 | 0.029 | |
| cell communication | GO:0007154 | 345 | 0.029 | |
| secretion | GO:0046903 | 50 | 0.029 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.028 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.028 | |
| regulation of nucleoside metabolic process | GO:0009118 | 106 | 0.028 | |
| mrna catabolic process | GO:0006402 | 93 | 0.028 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.028 | |
| negative regulation of protein processing | GO:0010955 | 33 | 0.027 | |
| regulation of protein maturation | GO:1903317 | 34 | 0.027 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.027 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.027 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.026 | |
| protein ubiquitination | GO:0016567 | 118 | 0.026 | |
| cell wall organization | GO:0071555 | 146 | 0.025 | |
| ncrna processing | GO:0034470 | 330 | 0.025 | |
| guanosine containing compound catabolic process | GO:1901069 | 109 | 0.025 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.025 | |
| positive regulation of nucleotide metabolic process | GO:0045981 | 101 | 0.025 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.025 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.024 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.024 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.024 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.024 | |
| cellular bud site selection | GO:0000282 | 35 | 0.023 | |
| negative regulation of molecular function | GO:0044092 | 68 | 0.023 | |
| positive regulation of receptor mediated endocytosis | GO:0048260 | 4 | 0.023 | |
| cytokinesis site selection | GO:0007105 | 40 | 0.023 | |
| developmental process | GO:0032502 | 261 | 0.023 | Human |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.022 | |
| positive regulation of transport | GO:0051050 | 32 | 0.022 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.022 | |
| mitochondrion distribution | GO:0048311 | 21 | 0.021 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.021 | |
| negative regulation of phosphorus metabolic process | GO:0010563 | 49 | 0.021 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.021 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.021 | Human |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.021 | |
| cytokinesis | GO:0000910 | 92 | 0.021 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.021 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.020 | |
| proton transport | GO:0015992 | 61 | 0.020 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.020 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.020 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.020 | |
| polyol metabolic process | GO:0019751 | 22 | 0.020 | |
| mrna metabolic process | GO:0016071 | 269 | 0.020 | |
| proteolysis | GO:0006508 | 268 | 0.020 | |
| response to oxygen containing compound | GO:1901700 | 61 | 0.019 | |
| lipid modification | GO:0030258 | 37 | 0.019 | |
| secretion by cell | GO:0032940 | 50 | 0.019 | |
| single organism reproductive process | GO:0044702 | 159 | 0.019 | |
| single organism membrane organization | GO:0044802 | 275 | 0.019 | Human |
| negative regulation of mitotic cell cycle | GO:0045930 | 63 | 0.018 | |
| response to nutrient levels | GO:0031667 | 150 | 0.018 | |
| negative regulation of catalytic activity | GO:0043086 | 60 | 0.017 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.017 | |
| cellular developmental process | GO:0048869 | 191 | 0.017 | Human |
| monovalent inorganic cation transport | GO:0015672 | 78 | 0.017 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.016 | Human |
| regulation of purine nucleotide metabolic process | GO:1900542 | 109 | 0.016 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.016 | |
| maintenance of location | GO:0051235 | 66 | 0.016 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.016 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.016 | |
| positive regulation of gtp catabolic process | GO:0033126 | 80 | 0.016 | |
| response to starvation | GO:0042594 | 96 | 0.015 | |
| hydrogen transport | GO:0006818 | 61 | 0.015 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.015 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.015 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.015 | |
| mitotic cell cycle checkpoint | GO:0007093 | 56 | 0.015 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.015 | |
| regulation of gtp catabolic process | GO:0033124 | 84 | 0.015 | |
| asexual reproduction | GO:0019954 | 48 | 0.015 | |
| rna catabolic process | GO:0006401 | 118 | 0.015 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.015 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 73 | 0.014 | |
| protein localization to golgi apparatus | GO:0034067 | 13 | 0.014 | |
| regulation of translation | GO:0006417 | 89 | 0.014 | |
| regulation of purine nucleotide catabolic process | GO:0033121 | 106 | 0.014 | |
| negative regulation of protein maturation | GO:1903318 | 33 | 0.014 | |
| mrna splicing via spliceosome | GO:0000398 | 108 | 0.014 | |
| dephosphorylation | GO:0016311 | 127 | 0.014 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.013 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.013 | |
| negative regulation of protein modification process | GO:0031400 | 37 | 0.012 | |
| signal transduction | GO:0007165 | 208 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.012 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.012 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.012 | Human |
| ascospore formation | GO:0030437 | 107 | 0.012 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.012 | |
| receptor mediated endocytosis | GO:0006898 | 8 | 0.012 | Human |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.011 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.011 | |
| phospholipid dephosphorylation | GO:0046839 | 15 | 0.011 | |
| negative regulation of response to stimulus | GO:0048585 | 40 | 0.011 | |
| regulation of gtpase activity | GO:0043087 | 84 | 0.010 | |
| chromosome segregation | GO:0007059 | 159 | 0.010 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.010 | |
