| mrna metabolic process | GO:0016071 | 269 | 0.966 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.917 | |
| rna 3 end processing | GO:0031123 | 88 | 0.824 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.774 | |
| mrna transport | GO:0051028 | 60 | 0.754 | |
| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.720 | |
| dna recombination | GO:0006310 | 172 | 0.683 | |
| mrna processing | GO:0006397 | 185 | 0.611 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 16 | 0.538 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.490 | |
| dna repair | GO:0006281 | 236 | 0.455 | |
| rna transport | GO:0050658 | 92 | 0.435 | |
| nucleic acid transport | GO:0050657 | 94 | 0.425 | |
| mrna catabolic process | GO:0006402 | 93 | 0.418 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.405 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.395 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.372 | |
| nuclear mrna surveillance | GO:0071028 | 22 | 0.366 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.361 | |
| rna localization | GO:0006403 | 112 | 0.359 | |
| rna export from nucleus | GO:0006405 | 88 | 0.326 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.306 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.296 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.290 | |
| rna splicing | GO:0008380 | 131 | 0.284 | |
| establishment of rna localization | GO:0051236 | 92 | 0.259 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.259 | |
| protein phosphorylation | GO:0006468 | 197 | 0.251 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.244 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.219 | |
| rna catabolic process | GO:0006401 | 118 | 0.209 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.206 | |
| telomere maintenance | GO:0000723 | 74 | 0.203 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.203 | |
| mrna 3 end processing | GO:0031124 | 54 | 0.194 | |
| anatomical structure homeostasis | GO:0060249 | 74 | 0.177 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.177 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.176 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.174 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.169 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.167 | |
| chromatin organization | GO:0006325 | 242 | 0.152 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.151 | |
| atp metabolic process | GO:0046034 | 251 | 0.144 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.138 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.134 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.134 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.125 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.118 | |
| nuclear export | GO:0051168 | 124 | 0.117 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.112 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.102 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.101 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.101 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.099 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.098 | |
| single organism membrane organization | GO:0044802 | 275 | 0.098 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.098 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.098 | |
| nuclear rna surveillance | GO:0071027 | 30 | 0.094 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.092 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.091 | |
| methylation | GO:0032259 | 101 | 0.091 | |
| membrane organization | GO:0061024 | 276 | 0.090 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.089 | |
| regulation of biological quality | GO:0065008 | 391 | 0.088 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.087 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.087 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.086 | |
| multi organism process | GO:0051704 | 233 | 0.083 | |
| nuclear transcribed mrna catabolic process | GO:0000956 | 89 | 0.082 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.082 | |
| phosphorylation | GO:0016310 | 291 | 0.081 | |
| regulation of transport | GO:0051049 | 85 | 0.081 | |
| mitochondrion organization | GO:0007005 | 261 | 0.079 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.076 | |
| histone h3 k4 methylation | GO:0051568 | 18 | 0.076 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.076 | |
| macromolecule methylation | GO:0043414 | 85 | 0.075 | |
| rna surveillance | GO:0071025 | 30 | 0.074 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.074 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.073 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.072 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.072 | |
| single organism developmental process | GO:0044767 | 258 | 0.072 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.072 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.071 | |
| response to chemical | GO:0042221 | 390 | 0.070 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.069 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.069 | |
| homeostatic process | GO:0042592 | 227 | 0.069 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.069 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.069 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.068 | |
| negative regulation of dna metabolic process | GO:0051053 | 36 | 0.066 | |
| anatomical structure development | GO:0048856 | 160 | 0.066 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.064 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.060 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.059 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.059 | |
| dna damage checkpoint | GO:0000077 | 29 | 0.056 | |
| poly a mrna export from nucleus | GO:0016973 | 24 | 0.056 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.056 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.056 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.054 | |
| protein localization to organelle | GO:0033365 | 337 | 0.053 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.053 | |
| positive regulation of protein phosphorylation | GO:0001934 | 28 | 0.051 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.051 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.049 | |
| developmental process | GO:0032502 | 261 | 0.049 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.048 | |
| protein ubiquitination | GO:0016567 | 118 | 0.047 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.046 | |
| dna replication | GO:0006260 | 147 | 0.046 | |
| response to external stimulus | GO:0009605 | 158 | 0.045 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.043 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.043 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.043 | |
| positive regulation of phosphorylation | GO:0042327 | 33 | 0.043 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.042 | |
| protein catabolic process | GO:0030163 | 221 | 0.042 | |
| termination of rna polymerase ii transcription | GO:0006369 | 26 | 0.041 | |
| rna splicing via transesterification reactions | GO:0000375 | 118 | 0.041 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.041 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.041 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.041 | |
| actin filament based process | GO:0030029 | 104 | 0.041 | |
| organelle fission | GO:0048285 | 272 | 0.040 | |
| histone methylation | GO:0016571 | 28 | 0.039 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.038 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.038 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.037 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 29 | 0.037 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.036 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.035 | |
| protein alkylation | GO:0008213 | 48 | 0.035 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.035 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.034 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.034 | |
| lipid metabolic process | GO:0006629 | 269 | 0.033 | |
| positive regulation of transport | GO:0051050 | 32 | 0.033 | |
| chromosome segregation | GO:0007059 | 159 | 0.033 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.032 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.032 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.032 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.032 | |
| positive regulation of protein modification by small protein conjugation or removal | GO:1903322 | 12 | 0.031 | |
| sulfur compound metabolic process | GO:0006790 | 95 | 0.031 | |
| intracellular protein transport | GO:0006886 | 319 | 0.030 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.030 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.030 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.029 | |
| histone lysine methylation | GO:0034968 | 26 | 0.029 | |
| gene silencing | GO:0016458 | 151 | 0.028 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.028 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.028 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.028 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.028 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.028 | |
| regulation of response to dna damage stimulus | GO:2001020 | 17 | 0.026 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.026 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.026 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.026 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.025 | |
| establishment of protein localization | GO:0045184 | 367 | 0.025 | |
| nuclear transport | GO:0051169 | 165 | 0.025 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.025 | |
| regulation of localization | GO:0032879 | 127 | 0.025 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.025 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.024 | |
| response to heat | GO:0009408 | 69 | 0.024 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.023 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.023 | |
| single organism catabolic process | GO:0044712 | 619 | 0.023 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.023 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.023 | |
| positive regulation of chromatin modification | GO:1903310 | 13 | 0.023 | |
| chromatin silencing | GO:0006342 | 147 | 0.022 | |
| histone ubiquitination | GO:0016574 | 17 | 0.022 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.022 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.022 | |
| protein transport | GO:0015031 | 345 | 0.022 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.022 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.022 | |
| purine nucleoside monophosphate metabolic process | GO:0009126 | 262 | 0.021 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.021 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.021 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.021 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.020 | |
| purine nucleoside monophosphate catabolic process | GO:0009128 | 224 | 0.020 | |
| translation | GO:0006412 | 230 | 0.020 | |
| single organism cellular localization | GO:1902580 | 375 | 0.020 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.019 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.019 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.019 | |
| positive regulation of intracellular transport | GO:0032388 | 4 | 0.019 | |
| regulation of transcription from rna polymerase i promoter | GO:0006356 | 36 | 0.019 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.019 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.019 | |
| atp catabolic process | GO:0006200 | 224 | 0.019 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.019 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.018 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 224 | 0.018 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.018 | |
| cell development | GO:0048468 | 107 | 0.018 | |
| protein targeting | GO:0006605 | 272 | 0.018 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.018 | |
| regulation of translation | GO:0006417 | 89 | 0.017 | |
| regulation of dna recombination | GO:0000018 | 24 | 0.017 | |
| cellular developmental process | GO:0048869 | 191 | 0.017 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.017 | |
| mitotic nuclear division | GO:0007067 | 131 | 0.016 | |
| mitotic recombination | GO:0006312 | 55 | 0.016 | |
| regulation of intracellular transport | GO:0032386 | 26 | 0.016 | |
| positive regulation of cytoplasmic transport | GO:1903651 | 4 | 0.016 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.016 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.016 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 20 | 0.016 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.016 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.016 | |
| protein import into nucleus | GO:0006606 | 55 | 0.015 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.015 | |
| cell cycle checkpoint | GO:0000075 | 82 | 0.015 | |
| mitotic dna integrity checkpoint | GO:0044774 | 18 | 0.015 | |
| organelle inheritance | GO:0048308 | 51 | 0.015 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.015 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.015 | |
| snorna processing | GO:0043144 | 34 | 0.015 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.014 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.014 | |
| positive regulation of transferase activity | GO:0051347 | 28 | 0.014 | |
| regulation of rna splicing | GO:0043484 | 3 | 0.014 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.014 | |
| mrna splice site selection | GO:0006376 | 8 | 0.014 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.014 | |
| mrna splicing via spliceosome | GO:0000398 | 108 | 0.014 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.014 | |
| snorna metabolic process | GO:0016074 | 40 | 0.014 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.013 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 224 | 0.013 | |
| telomere organization | GO:0032200 | 75 | 0.013 | |
| protein methylation | GO:0006479 | 48 | 0.013 | |
| proteolysis | GO:0006508 | 268 | 0.013 | |
| cellular response to heat | GO:0034605 | 53 | 0.013 | |
| cell aging | GO:0007569 | 70 | 0.013 | |
| protein localization to membrane | GO:0072657 | 102 | 0.012 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.012 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.012 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.012 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.012 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.012 | |
| aging | GO:0007568 | 71 | 0.011 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.011 | |
| negative regulation of gene expression epigenetic | GO:0045814 | 147 | 0.011 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.011 | |
| meiosis i | GO:0007127 | 92 | 0.011 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.011 | |
| amine metabolic process | GO:0009308 | 51 | 0.011 | |
| regulation of chromatin modification | GO:1903308 | 23 | 0.011 | |
| histone modification | GO:0016570 | 119 | 0.011 | |
| cation homeostasis | GO:0055080 | 105 | 0.011 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 7 | 0.010 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.010 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.010 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.010 | |
| response to nutrient levels | GO:0031667 | 150 | 0.010 | |
