| protein complex biogenesis | GO:0070271 | 314 | 0.338 | |
| mrna metabolic process | GO:0016071 | 269 | 0.113 | |
| protein complex assembly | GO:0006461 | 302 | 0.104 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.101 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.068 | |
| mitochondrial translation | GO:0032543 | 52 | 0.068 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.064 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.064 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.061 | |
| multi organism process | GO:0051704 | 233 | 0.059 | |
| protein ubiquitination | GO:0016567 | 118 | 0.055 | |
| regulation of biological quality | GO:0065008 | 391 | 0.055 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.054 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.051 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.047 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.046 | |
| nuclear transport | GO:0051169 | 165 | 0.043 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.042 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.041 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.037 | |
| cellular developmental process | GO:0048869 | 191 | 0.037 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.036 | |
| ncrna processing | GO:0034470 | 330 | 0.035 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.035 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.034 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.034 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.034 | |
| signaling | GO:0023052 | 208 | 0.034 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.032 | |
| regulation of signaling | GO:0023051 | 119 | 0.031 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.030 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.030 | |
| single organism signaling | GO:0044700 | 208 | 0.029 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.029 | |
| dephosphorylation | GO:0016311 | 127 | 0.027 | |
| organelle fusion | GO:0048284 | 85 | 0.027 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.026 | |
| establishment of protein localization | GO:0045184 | 367 | 0.025 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.024 | |
| membrane organization | GO:0061024 | 276 | 0.023 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.023 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.022 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.022 | |
| protein localization to organelle | GO:0033365 | 337 | 0.022 | |
| cell communication | GO:0007154 | 345 | 0.021 | |
| anatomical structure development | GO:0048856 | 160 | 0.021 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.021 | |
| response to chemical | GO:0042221 | 390 | 0.021 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.020 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.020 | |
| single organism membrane organization | GO:0044802 | 275 | 0.020 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.019 | |
| translation | GO:0006412 | 230 | 0.019 | |
| mrna processing | GO:0006397 | 185 | 0.018 | |
| coenzyme biosynthetic process | GO:0009108 | 66 | 0.018 | |
| single organism cellular localization | GO:1902580 | 375 | 0.018 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.018 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.017 | |
| signal transduction | GO:0007165 | 208 | 0.017 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.016 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.016 | |
| single organism catabolic process | GO:0044712 | 619 | 0.016 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.016 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.016 | |
| mitochondrion organization | GO:0007005 | 261 | 0.015 | |
| homeostatic process | GO:0042592 | 227 | 0.015 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.015 | |
| membrane fusion | GO:0061025 | 73 | 0.015 | |
| ascospore formation | GO:0030437 | 107 | 0.015 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.015 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.015 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.014 | |
| protein catabolic process | GO:0030163 | 221 | 0.014 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.014 | |
| cation homeostasis | GO:0055080 | 105 | 0.014 | |
| regulation of mitochondrion organization | GO:0010821 | 20 | 0.014 | |
| negative regulation of intracellular signal transduction | GO:1902532 | 27 | 0.014 | |
| secretion | GO:0046903 | 50 | 0.014 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.013 | |
| negative regulation of response to stimulus | GO:0048585 | 40 | 0.013 | |
| sexual reproduction | GO:0019953 | 216 | 0.013 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.013 | |
| cell differentiation | GO:0030154 | 161 | 0.013 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.013 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.012 | |
| trna processing | GO:0008033 | 101 | 0.012 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.012 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.012 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.012 | |
| reproductive process | GO:0022414 | 248 | 0.012 | |
| regulation of translation | GO:0006417 | 89 | 0.012 | |
| cellular amide metabolic process | GO:0043603 | 59 | 0.011 | |
| fungal type cell wall organization | GO:0031505 | 145 | 0.011 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.011 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.011 | |
| sexual sporulation | GO:0034293 | 113 | 0.011 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.011 | |
| nuclear export | GO:0051168 | 124 | 0.011 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.011 | |
| intracellular protein transport | GO:0006886 | 319 | 0.011 | |
| rna splicing via transesterification reactions | GO:0000375 | 118 | 0.011 | |
| ubiquitin dependent protein catabolic process | GO:0006511 | 181 | 0.011 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.011 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.011 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.011 | |
| rrna modification | GO:0000154 | 19 | 0.011 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.010 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.010 | |
| rrna processing | GO:0006364 | 227 | 0.010 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.010 | |
| regulation of molecular function | GO:0065009 | 320 | 0.010 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.010 | |
