| mitochondrion organization | GO:0007005 | 261 | 0.240 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.193 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.126 | |
| homeostatic process | GO:0042592 | 227 | 0.091 | |
| generation of precursor metabolites and energy | GO:0006091 | 147 | 0.088 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.084 | |
| membrane organization | GO:0061024 | 276 | 0.080 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.077 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.073 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.071 | |
| single organism catabolic process | GO:0044712 | 619 | 0.068 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.067 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.064 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.063 | |
| regulation of biological quality | GO:0065008 | 391 | 0.055 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.055 | |
| sexual reproduction | GO:0019953 | 216 | 0.054 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.052 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.051 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.048 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.047 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.043 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.042 | |
| chemical homeostasis | GO:0048878 | 137 | 0.042 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.039 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.038 | |
| response to chemical | GO:0042221 | 390 | 0.038 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.038 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.038 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.037 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.037 | |
| anion transport | GO:0006820 | 145 | 0.036 | |
| monocarboxylic acid metabolic process | GO:0032787 | 122 | 0.035 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.035 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.034 | |
| cell communication | GO:0007154 | 345 | 0.031 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.031 | |
| oxidation reduction process | GO:0055114 | 353 | 0.030 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.030 | |
| organophosphate ester transport | GO:0015748 | 45 | 0.030 | |
| lipid metabolic process | GO:0006629 | 269 | 0.029 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.028 | |
| single organism developmental process | GO:0044767 | 258 | 0.028 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.028 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.028 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.027 | |
| cellular homeostasis | GO:0019725 | 138 | 0.027 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.026 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.026 | |
| nucleoside biosynthetic process | GO:0009163 | 38 | 0.025 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.025 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.023 | |
| reproductive process | GO:0022414 | 248 | 0.023 | |
| ion transport | GO:0006811 | 274 | 0.022 | |
| cofactor metabolic process | GO:0051186 | 126 | 0.022 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.022 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.022 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.022 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.021 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.020 | |
| ion homeostasis | GO:0050801 | 118 | 0.019 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.019 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.019 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.019 | |
| developmental process | GO:0032502 | 261 | 0.018 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.018 | |
| carbohydrate derivative biosynthetic process | GO:1901137 | 181 | 0.018 | |
| mitochondrial membrane organization | GO:0007006 | 48 | 0.018 | |
| cofactor biosynthetic process | GO:0051188 | 80 | 0.017 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.017 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.016 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.015 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.015 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.015 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.015 | |
| energy derivation by oxidation of organic compounds | GO:0015980 | 125 | 0.015 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.015 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.015 | |
| nuclear transport | GO:0051169 | 165 | 0.015 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.015 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.014 | |
| coenzyme metabolic process | GO:0006732 | 104 | 0.014 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.014 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.014 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.013 | |
| small molecule catabolic process | GO:0044282 | 88 | 0.013 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.013 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.013 | |
| response to inorganic substance | GO:0010035 | 47 | 0.013 | |
| single organism membrane organization | GO:0044802 | 275 | 0.013 | |
| protein maturation | GO:0051604 | 76 | 0.013 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.013 | |
| lipid catabolic process | GO:0016042 | 33 | 0.012 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.012 | |
| transmembrane transport | GO:0055085 | 349 | 0.012 | |
| aging | GO:0007568 | 71 | 0.012 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.012 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.012 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.012 | |
| mitochondrial genome maintenance | GO:0000002 | 40 | 0.012 | |
| nuclear transcribed mrna catabolic process deadenylation dependent decay | GO:0000288 | 44 | 0.012 | |
| glycerolipid metabolic process | GO:0046486 | 108 | 0.011 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.011 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.011 | |
| chromatin silencing | GO:0006342 | 147 | 0.011 | |
| sporulation | GO:0043934 | 132 | 0.011 | |
| anatomical structure development | GO:0048856 | 160 | 0.011 | |
| single organism signaling | GO:0044700 | 208 | 0.011 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.011 | |
| cell development | GO:0048468 | 107 | 0.011 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.011 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.011 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.011 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.011 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.010 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.010 | |
| hexose metabolic process | GO:0019318 | 78 | 0.010 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.010 | |
| nuclear export | GO:0051168 | 124 | 0.010 | |
