| protein targeting | GO:0006605 | 272 | 0.461 | |
| establishment of protein localization | GO:0045184 | 367 | 0.405 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.353 | |
| transition metal ion transport | GO:0000041 | 45 | 0.353 | |
| metal ion transport | GO:0030001 | 75 | 0.318 | |
| single organism cellular localization | GO:1902580 | 375 | 0.307 | |
| retrograde transport endosome to golgi | GO:0042147 | 33 | 0.254 | |
| protein transport | GO:0015031 | 345 | 0.251 | |
| endosomal transport | GO:0016197 | 86 | 0.201 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.179 | |
| ion transport | GO:0006811 | 274 | 0.168 | |
| cation transport | GO:0006812 | 166 | 0.161 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.160 | |
| signaling | GO:0023052 | 208 | 0.155 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.149 | |
| cellular ion homeostasis | GO:0006873 | 112 | 0.147 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.143 | |
| regulation of biological quality | GO:0065008 | 391 | 0.137 | |
| cellular metal ion homeostasis | GO:0006875 | 78 | 0.126 | |
| protein localization to organelle | GO:0033365 | 337 | 0.125 | |
| cell communication | GO:0007154 | 345 | 0.118 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.111 | |
| cellular homeostasis | GO:0019725 | 138 | 0.106 | |
| transition metal ion homeostasis | GO:0055076 | 59 | 0.106 | |
| response to nutrient levels | GO:0031667 | 150 | 0.106 | |
| cellular chemical homeostasis | GO:0055082 | 123 | 0.101 | |
| regulation of localization | GO:0032879 | 127 | 0.097 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.097 | |
| cation homeostasis | GO:0055080 | 105 | 0.096 | |
| protein targeting to membrane | GO:0006612 | 52 | 0.093 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.092 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.090 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.089 | |
| homeostatic process | GO:0042592 | 227 | 0.087 | |
| cellular transition metal ion homeostasis | GO:0046916 | 59 | 0.076 | |
| signal transduction | GO:0007165 | 208 | 0.073 | |
| regulation of cell communication | GO:0010646 | 124 | 0.070 | |
| cellular response to starvation | GO:0009267 | 90 | 0.070 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.067 | |
| single organism membrane organization | GO:0044802 | 275 | 0.066 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.066 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.065 | |
| chemical homeostasis | GO:0048878 | 137 | 0.065 | |
| single organism signaling | GO:0044700 | 208 | 0.064 | |
| protein phosphorylation | GO:0006468 | 197 | 0.061 | |
| membrane organization | GO:0061024 | 276 | 0.061 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.057 | |
| response to starvation | GO:0042594 | 96 | 0.056 | |
| single organism developmental process | GO:0044767 | 258 | 0.056 | |
| metal ion homeostasis | GO:0055065 | 79 | 0.054 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.054 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.054 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.054 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.054 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.052 | |
| single organism catabolic process | GO:0044712 | 619 | 0.051 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.049 | |
| vacuolar transport | GO:0007034 | 145 | 0.049 | |
| reproductive process | GO:0022414 | 248 | 0.049 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.047 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.047 | |
| regulation of transport | GO:0051049 | 85 | 0.047 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.045 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.045 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.044 | |
| response to external stimulus | GO:0009605 | 158 | 0.044 | |
| maintenance of location | GO:0051235 | 66 | 0.044 | |
| multi organism process | GO:0051704 | 233 | 0.042 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.041 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.041 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.040 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.039 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.039 | |
| regulation of signaling | GO:0023051 | 119 | 0.038 | |
| alpha amino acid biosynthetic process | GO:1901607 | 91 | 0.038 | |
| macroautophagy | GO:0016236 | 55 | 0.038 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.038 | |
| protein localization to membrane | GO:0072657 | 102 | 0.037 | |
| protein processing | GO:0016485 | 64 | 0.036 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.036 | |
| cation transmembrane transport | GO:0098655 | 135 | 0.036 | |
| vesicle organization | GO:0016050 | 68 | 0.035 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.035 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.034 | |
| divalent inorganic cation transport | GO:0072511 | 26 | 0.032 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.031 | |
| phosphorylation | GO:0016310 | 291 | 0.030 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.030 | |
| response to pheromone involved in conjugation with cellular fusion | GO:0000749 | 74 | 0.029 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.029 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.028 | |
| organic acid biosynthetic process | GO:0016053 | 152 | 0.028 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.028 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.028 | |
| carboxylic acid biosynthetic process | GO:0046394 | 152 | 0.028 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.027 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.027 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.026 | |
| negative regulation of protein processing | GO:0010955 | 33 | 0.026 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.026 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.026 | |
| regulation of protein catabolic process | GO:0042176 | 40 | 0.025 | |
| regulation of response to nutrient levels | GO:0032107 | 20 | 0.025 | |
| transmembrane transport | GO:0055085 | 349 | 0.025 | |
| negative regulation of protein catabolic process | GO:0042177 | 27 | 0.024 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.024 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.024 | |
| sexual reproduction | GO:0019953 | 216 | 0.024 | |
| protein localization to golgi apparatus | GO:0034067 | 13 | 0.024 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.023 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.023 | |
| ion homeostasis | GO:0050801 | 118 | 0.023 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.023 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.023 | |
| negative regulation of protein maturation | GO:1903318 | 33 | 0.023 | |
| inorganic ion transmembrane transport | GO:0098660 | 109 | 0.023 | |
| phosphatidylinositol metabolic process | GO:0046488 | 62 | 0.022 | |
| lipid transport | GO:0006869 | 58 | 0.022 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.022 | |
| amine metabolic process | GO:0009308 | 51 | 0.022 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.022 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.022 | |
| regulation of protein serine threonine kinase activity | GO:0071900 | 41 | 0.022 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.021 | |
| anatomical structure development | GO:0048856 | 160 | 0.021 | |
| developmental process | GO:0032502 | 261 | 0.021 | |
| multi organism cellular process | GO:0044764 | 120 | 0.021 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.021 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.021 | |
| regulation of macroautophagy | GO:0016241 | 15 | 0.021 | |
| protein acylation | GO:0043543 | 66 | 0.021 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.021 | |
| mitochondrion organization | GO:0007005 | 261 | 0.021 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.021 | |
| regulation of protein processing | GO:0070613 | 34 | 0.020 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.020 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.020 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.020 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.020 | |
| divalent metal ion transport | GO:0070838 | 17 | 0.020 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.020 | |
| regulation of molecular function | GO:0065009 | 320 | 0.020 | |
| lipid localization | GO:0010876 | 60 | 0.019 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.019 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.019 | |
| cellular cation homeostasis | GO:0030003 | 100 | 0.019 | |
| protein maturation | GO:0051604 | 76 | 0.019 | |
| lipoprotein biosynthetic process | GO:0042158 | 40 | 0.019 | |
| ion transmembrane transport | GO:0034220 | 200 | 0.019 | |
| protein methylation | GO:0006479 | 48 | 0.019 | |
| regulation of endocytosis | GO:0030100 | 17 | 0.019 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.018 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.018 | |
| regulation of intracellular signal transduction | GO:1902531 | 78 | 0.018 | |
| organelle inheritance | GO:0048308 | 51 | 0.018 | |
| negative regulation of cell communication | GO:0010648 | 33 | 0.017 | |
| piecemeal microautophagy of nucleus | GO:0034727 | 33 | 0.017 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.017 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.017 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.017 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.017 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.017 | |
| guanosine containing compound metabolic process | GO:1901068 | 111 | 0.017 | |
| endocytosis | GO:0006897 | 90 | 0.017 | |
| regulation of anatomical structure size | GO:0090066 | 50 | 0.016 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.016 | |
| regulation of protein maturation | GO:1903317 | 34 | 0.016 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.016 | |
| nucleophagy | GO:0044804 | 34 | 0.016 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.016 | |
| filamentous growth | GO:0030447 | 124 | 0.015 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.015 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.015 | |
| negative regulation of catabolic process | GO:0009895 | 43 | 0.015 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.015 | |
| response to chemical | GO:0042221 | 390 | 0.015 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.015 | |
| cellular iron ion homeostasis | GO:0006879 | 34 | 0.015 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.014 | |
| protein complex assembly | GO:0006461 | 302 | 0.014 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.014 | |
| guanosine containing compound catabolic process | GO:1901069 | 109 | 0.014 | |
| cellular developmental process | GO:0048869 | 191 | 0.014 | |
| conjugation | GO:0000746 | 107 | 0.014 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.014 | |
| sexual sporulation | GO:0034293 | 113 | 0.014 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.014 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.013 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.013 | |
| nuclear division | GO:0000280 | 263 | 0.013 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.013 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.013 | |
| organic hydroxy compound metabolic process | GO:1901615 | 125 | 0.012 | |
| protein catabolic process | GO:0030163 | 221 | 0.012 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.012 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.012 | |
| regulation of multi organism process | GO:0043900 | 20 | 0.012 | |
| intracellular protein transport | GO:0006886 | 319 | 0.012 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.012 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.012 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.012 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.012 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.012 | |
| maintenance of protein location | GO:0045185 | 53 | 0.011 | |
| ascospore formation | GO:0030437 | 107 | 0.011 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.011 | |
| single organism reproductive process | GO:0044702 | 159 | 0.011 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.011 | |
| protein alkylation | GO:0008213 | 48 | 0.011 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.011 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.011 | |
| organelle localization | GO:0051640 | 128 | 0.011 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.011 | |
| histone modification | GO:0016570 | 119 | 0.010 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.010 | |
| growth of unicellular organism as a thread of attached cells | GO:0070783 | 105 | 0.010 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.010 | |
| telomere organization | GO:0032200 | 75 | 0.010 | |
| meiotic cell cycle | GO:0051321 | 272 | 0.010 | |
| gtp metabolic process | GO:0046039 | 107 | 0.010 | |
| regulation of protein kinase activity | GO:0045859 | 67 | 0.010 | |
| nucleic acid transport | GO:0050657 | 94 | 0.010 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.010 | |
| rna localization | GO:0006403 | 112 | 0.010 | |
| regulation of vacuole fusion non autophagic | GO:0032889 | 14 | 0.010 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.010 | |
