| vacuolar transport | GO:0007034 | 145 | 0.989 | |
| cvt pathway | GO:0032258 | 37 | 0.986 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.972 | |
| protein localization to vacuole | GO:0072665 | 92 | 0.971 | |
| protein targeting | GO:0006605 | 272 | 0.932 | |
| protein transport | GO:0015031 | 345 | 0.932 | |
| protein localization to organelle | GO:0033365 | 337 | 0.924 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.918 | |
| establishment of protein localization to vacuole | GO:0072666 | 91 | 0.917 | |
| golgi vesicle transport | GO:0048193 | 188 | 0.911 | |
| intra golgi vesicle mediated transport | GO:0006891 | 22 | 0.910 | |
| intracellular protein transport | GO:0006886 | 319 | 0.897 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.792 | |
| retrograde transport vesicle recycling within golgi | GO:0000301 | 5 | 0.707 | |
| single organism cellular localization | GO:1902580 | 375 | 0.685 | |
| establishment of protein localization | GO:0045184 | 367 | 0.680 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.338 | |
| endomembrane system organization | GO:0010256 | 74 | 0.216 | |
| post golgi vesicle mediated transport | GO:0006892 | 72 | 0.208 | |
| protein complex assembly | GO:0006461 | 302 | 0.166 | |
| endosomal transport | GO:0016197 | 86 | 0.148 | |
| cellular response to starvation | GO:0009267 | 90 | 0.112 | |
| response to starvation | GO:0042594 | 96 | 0.104 | |
| single organism catabolic process | GO:0044712 | 619 | 0.083 | |
| cellular lipid metabolic process | GO:0044255 | 229 | 0.080 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.079 | |
| cellular response to external stimulus | GO:0071496 | 150 | 0.078 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.074 | |
| peroxisome degradation | GO:0030242 | 22 | 0.072 | |
| cellular response to extracellular stimulus | GO:0031668 | 150 | 0.064 | |
| single organism carbohydrate metabolic process | GO:0044723 | 237 | 0.056 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 27 | 0.054 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.052 | |
| late endosome to vacuole transport via multivesicular body sorting pathway | GO:0032511 | 26 | 0.052 | |
| lipid metabolic process | GO:0006629 | 269 | 0.051 | |
| phospholipid biosynthetic process | GO:0008654 | 89 | 0.050 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.046 | |
| phospholipid metabolic process | GO:0006644 | 125 | 0.039 | |
| cell communication | GO:0007154 | 345 | 0.036 | |
| cellular response to nutrient levels | GO:0031669 | 144 | 0.035 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.035 | |
| response to external stimulus | GO:0009605 | 158 | 0.035 | |
| carbohydrate metabolic process | GO:0005975 | 252 | 0.035 | |
| organophosphate biosynthetic process | GO:0090407 | 182 | 0.032 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.031 | |
| glycerophospholipid biosynthetic process | GO:0046474 | 68 | 0.029 | |
| macroautophagy | GO:0016236 | 55 | 0.028 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.026 | |
| chromatin modification | GO:0016568 | 200 | 0.026 | |
| peroxisome organization | GO:0007031 | 68 | 0.026 | |
| golgi to endosome transport | GO:0006895 | 17 | 0.025 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.025 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.025 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.025 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.025 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.023 | |
| lipid biosynthetic process | GO:0008610 | 170 | 0.023 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.023 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.022 | |
| golgi to plasma membrane transport | GO:0006893 | 33 | 0.021 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.021 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.021 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.021 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.020 | |
| cellular amino acid biosynthetic process | GO:0008652 | 118 | 0.018 | |
| er to golgi vesicle mediated transport | GO:0006888 | 86 | 0.017 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.017 | |
| regulation of biological quality | GO:0065008 | 391 | 0.017 | |
| organonitrogen compound biosynthetic process | GO:1901566 | 314 | 0.017 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.017 | |
| response to nutrient levels | GO:0031667 | 150 | 0.017 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.016 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.016 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.016 | |
| positive regulation of programmed cell death | GO:0043068 | 3 | 0.016 | |
| retrograde vesicle mediated transport golgi to er | GO:0006890 | 28 | 0.016 | |
| retrograde transport endosome to golgi | GO:0042147 | 33 | 0.016 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.015 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.015 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.015 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.015 | |
| glycerophospholipid metabolic process | GO:0006650 | 98 | 0.015 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.015 | |
| protein folding | GO:0006457 | 94 | 0.015 | |
| single organism signaling | GO:0044700 | 208 | 0.015 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.015 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.015 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.014 | |
| membrane organization | GO:0061024 | 276 | 0.014 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.014 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.014 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.014 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.014 | |
| glycerolipid biosynthetic process | GO:0045017 | 71 | 0.014 | |
| nuclear export | GO:0051168 | 124 | 0.014 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.013 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.013 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.013 | |
| proteolysis | GO:0006508 | 268 | 0.013 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.013 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.013 | |
| response to uv | GO:0009411 | 4 | 0.013 | |
| small molecule biosynthetic process | GO:0044283 | 258 | 0.013 | |
| sterol transport | GO:0015918 | 24 | 0.012 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.012 | |
| invasive growth in response to glucose limitation | GO:0001403 | 61 | 0.012 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.012 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.012 | |
| amine metabolic process | GO:0009308 | 51 | 0.011 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 224 | 0.011 | |
| regulation of translation | GO:0006417 | 89 | 0.011 | |
| cellular response to topologically incorrect protein | GO:0035967 | 32 | 0.011 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.011 | |
| maintenance of protein location | GO:0045185 | 53 | 0.011 | |
| autophagy | GO:0006914 | 106 | 0.011 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.011 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.011 | |
| alcohol biosynthetic process | GO:0046165 | 75 | 0.011 | |
| response to temperature stimulus | GO:0009266 | 74 | 0.010 | |
| single organism membrane organization | GO:0044802 | 275 | 0.010 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.010 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.010 | |
| ribosome localization | GO:0033750 | 46 | 0.010 | |
| purine ribonucleoside monophosphate catabolic process | GO:0009169 | 224 | 0.010 | |
| positive regulation of cellular catabolic process | GO:0031331 | 128 | 0.010 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.010 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.010 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.010 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.010 | |
