| vesicle mediated transport | GO:0016192 | 335 | 0.950 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.937 | |
| endocytosis | GO:0006897 | 90 | 0.936 | |
| single organism signaling | GO:0044700 | 208 | 0.724 | |
| cortical cytoskeleton organization | GO:0030865 | 11 | 0.572 | |
| signal transduction | GO:0007165 | 208 | 0.540 | |
| actin cytoskeleton organization | GO:0030036 | 100 | 0.523 | |
| single organism developmental process | GO:0044767 | 258 | 0.466 | |
| vesicle organization | GO:0016050 | 68 | 0.438 | |
| anatomical structure development | GO:0048856 | 160 | 0.410 | |
| developmental process | GO:0032502 | 261 | 0.396 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.324 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.314 | |
| cortical actin cytoskeleton organization | GO:0030866 | 11 | 0.286 | |
| cellular developmental process | GO:0048869 | 191 | 0.278 | |
| actin filament based process | GO:0030029 | 104 | 0.239 | |
| signaling | GO:0023052 | 208 | 0.239 | |
| secretion | GO:0046903 | 50 | 0.237 | |
| actin filament organization | GO:0007015 | 56 | 0.223 | |
| microtubule based process | GO:0007017 | 117 | 0.204 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.194 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.189 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.184 | |
| cell communication | GO:0007154 | 345 | 0.162 | |
| actin cortical patch assembly | GO:0000147 | 9 | 0.159 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.157 | |
| chromosome segregation | GO:0007059 | 159 | 0.146 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.136 | |
| cell morphogenesis | GO:0000902 | 30 | 0.133 | |
| protein transport | GO:0015031 | 345 | 0.131 | |
| protein targeting | GO:0006605 | 272 | 0.126 | |
| negative regulation of signaling | GO:0023057 | 30 | 0.119 | |
| anatomical structure morphogenesis | GO:0009653 | 160 | 0.114 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.109 | |
| regulation of biological quality | GO:0065008 | 391 | 0.104 | |
| rrna metabolic process | GO:0016072 | 244 | 0.104 | |
| sporulation | GO:0043934 | 132 | 0.102 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.102 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.099 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.096 | |
| membrane organization | GO:0061024 | 276 | 0.096 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.094 | |
| multi organism process | GO:0051704 | 233 | 0.093 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.092 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.089 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.084 | |
| regulation of localization | GO:0032879 | 127 | 0.081 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.080 | |
| protein catabolic process | GO:0030163 | 221 | 0.069 | |
| protein localization to organelle | GO:0033365 | 337 | 0.069 | |
| protein complex disassembly | GO:0043241 | 70 | 0.068 | |
| single organism cellular localization | GO:1902580 | 375 | 0.067 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.066 | |
| cell division | GO:0051301 | 205 | 0.066 | |
| establishment of protein localization | GO:0045184 | 367 | 0.064 | |
| secretion by cell | GO:0032940 | 50 | 0.062 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.062 | |
| regulation of cytoskeleton organization | GO:0051493 | 63 | 0.058 | |
| establishment or maintenance of cell polarity | GO:0007163 | 96 | 0.054 | |
| exocytosis | GO:0006887 | 42 | 0.052 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.051 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.050 | |
| single organism membrane organization | GO:0044802 | 275 | 0.050 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.049 | |
| organelle assembly | GO:0070925 | 118 | 0.049 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.049 | |
| regulation of molecular function | GO:0065009 | 320 | 0.049 | |
| protein complex assembly | GO:0006461 | 302 | 0.046 | |
| intracellular protein transport | GO:0006886 | 319 | 0.046 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.046 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.041 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.041 | |
| regulation of cell morphogenesis | GO:0022604 | 11 | 0.040 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.037 | |
| negative regulation of mitotic cell cycle | GO:0045930 | 63 | 0.037 | |
| regulation of signaling | GO:0023051 | 119 | 0.037 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.036 | |
| negative regulation of cell cycle | GO:0045786 | 91 | 0.035 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.035 | |
| growth | GO:0040007 | 157 | 0.033 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.033 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.032 | |
| sexual reproduction | GO:0019953 | 216 | 0.031 | |
| endosome transport via multivesicular body sorting pathway | GO:0032509 | 27 | 0.031 | |
| endomembrane system organization | GO:0010256 | 74 | 0.031 | |
| negative regulation of signal transduction | GO:0009968 | 30 | 0.030 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.029 | |
| regulation of transport | GO:0051049 | 85 | 0.029 | |
| organelle localization | GO:0051640 | 128 | 0.028 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.028 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.027 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.027 | |
| regulation of protein localization | GO:0032880 | 62 | 0.027 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.027 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.027 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.026 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 73 | 0.026 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.026 | |
| vacuolar transport | GO:0007034 | 145 | 0.025 | |
| negative regulation of cell cycle phase transition | GO:1901988 | 59 | 0.025 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.024 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.024 | |
| endosomal transport | GO:0016197 | 86 | 0.023 | |
| membrane budding | GO:0006900 | 22 | 0.023 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.023 | |
| organophosphate catabolic process | GO:0046434 | 338 | 0.022 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.022 | |
| negative regulation of mitosis | GO:0045839 | 39 | 0.022 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.021 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.021 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.020 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.020 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.020 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.019 | |
| regulation of endocytosis | GO:0030100 | 17 | 0.018 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.018 | |
| cell projection assembly | GO:0030031 | 8 | 0.017 | |
| single organism reproductive process | GO:0044702 | 159 | 0.017 | |
| actin cortical patch organization | GO:0044396 | 10 | 0.016 | |
| negative regulation of mitotic cell cycle phase transition | GO:1901991 | 57 | 0.016 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.016 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.016 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.015 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.015 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.015 | |
| proteolysis | GO:0006508 | 268 | 0.015 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.015 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.015 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.015 | |
| protein modification by small protein removal | GO:0070646 | 29 | 0.015 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.015 | |
| receptor mediated endocytosis | GO:0006898 | 8 | 0.015 | |
| response to chemical | GO:0042221 | 390 | 0.014 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.014 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.014 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.013 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.013 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.012 | |
| regulation of hydrolase activity | GO:0051336 | 133 | 0.012 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.012 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.012 | |
| endosome organization | GO:0007032 | 9 | 0.012 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.011 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.011 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.011 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.011 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.011 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.011 | |
| multi organism cellular process | GO:0044764 | 120 | 0.011 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.011 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.011 | |
| receptor metabolic process | GO:0043112 | 8 | 0.011 | |
| cytokinesis | GO:0000910 | 92 | 0.011 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.010 | |
| actin nucleation | GO:0045010 | 10 | 0.010 | |
| developmental process involved in reproduction | GO:0003006 | 159 | 0.010 | |
