| nucleus organization | GO:0006997 | 62 | 0.800 | |
| microtubule cytoskeleton organization | GO:0000226 | 109 | 0.795 | |
| karyogamy | GO:0000741 | 17 | 0.550 | |
| protein complex assembly | GO:0006461 | 302 | 0.548 | |
| single organism cellular localization | GO:1902580 | 375 | 0.525 | |
| rna export from nucleus | GO:0006405 | 88 | 0.484 | |
| mrna export from nucleus | GO:0006406 | 60 | 0.480 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.469 | |
| protein localization to membrane | GO:0072657 | 102 | 0.460 | |
| nucleobase containing compound transport | GO:0015931 | 124 | 0.453 | |
| intracellular protein transport | GO:0006886 | 319 | 0.438 | |
| nuclear transport | GO:0051169 | 165 | 0.432 | |
| cellular macromolecule catabolic process | GO:0044265 | 363 | 0.430 | |
| establishment of rna localization | GO:0051236 | 92 | 0.383 | |
| nitrogen compound transport | GO:0071705 | 212 | 0.375 | |
| rna transport | GO:0050658 | 92 | 0.370 | |
| single organism membrane organization | GO:0044802 | 275 | 0.358 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.344 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.339 | |
| microtubule polymerization | GO:0046785 | 30 | 0.337 | |
| nucleic acid transport | GO:0050657 | 94 | 0.332 | |
| microtubule based process | GO:0007017 | 117 | 0.328 | |
| nucleobase containing compound catabolic process | GO:0034655 | 479 | 0.322 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.319 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.316 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.308 | |
| cytoskeleton organization | GO:0007010 | 230 | 0.301 | |
| protein import | GO:0017038 | 122 | 0.297 | |
| cellular protein complex assembly | GO:0043623 | 209 | 0.294 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.285 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.284 | |
| mrna transport | GO:0051028 | 60 | 0.278 | |
| spindle pole body duplication | GO:0030474 | 17 | 0.261 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.260 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.249 | |
| chromosome localization | GO:0050000 | 20 | 0.242 | |
| establishment of protein localization to organelle | GO:0072594 | 278 | 0.234 | |
| spindle pole body organization | GO:0051300 | 33 | 0.221 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.219 | |
| nucleocytoplasmic transport | GO:0006913 | 163 | 0.202 | |
| protein localization to organelle | GO:0033365 | 337 | 0.191 | |
| mrna metabolic process | GO:0016071 | 269 | 0.181 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.178 | |
| membrane organization | GO:0061024 | 276 | 0.175 | |
| nuclear export | GO:0051168 | 124 | 0.174 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.155 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.150 | |
| glycosyl compound metabolic process | GO:1901657 | 398 | 0.150 | |
| poly a mrna export from nucleus | GO:0016973 | 24 | 0.150 | |
| single organism nuclear import | GO:1902593 | 56 | 0.144 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.140 | |
| organelle fusion | GO:0048284 | 85 | 0.140 | |
| multi organism reproductive process | GO:0044703 | 216 | 0.140 | |
| protein targeting to nucleus | GO:0044744 | 57 | 0.133 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.132 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.129 | |
| protein import into nucleus | GO:0006606 | 55 | 0.123 | |
| rna localization | GO:0006403 | 112 | 0.121 | |
| response to cell cycle checkpoint signaling | GO:0072396 | 8 | 0.117 | |
| nuclear mrna surveillance | GO:0071028 | 22 | 0.115 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.113 | |
| nuclear rna surveillance | GO:0071027 | 30 | 0.112 | |
| nuclear import | GO:0051170 | 57 | 0.112 | |
| protein targeting | GO:0006605 | 272 | 0.108 | |
| ribose phosphate metabolic process | GO:0019693 | 384 | 0.104 | |
| organelle assembly | GO:0070925 | 118 | 0.099 | |
| establishment of protein localization | GO:0045184 | 367 | 0.095 | |
| regulation of localization | GO:0032879 | 127 | 0.094 | |
| purine ribonucleoside metabolic process | GO:0046128 | 380 | 0.093 | |
| protein polymerization | GO:0051258 | 51 | 0.092 | |
| regulation of biological quality | GO:0065008 | 391 | 0.091 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.091 | |
| conjugation | GO:0000746 | 107 | 0.087 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.086 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.084 | |
| regulation of cellular localization | GO:0060341 | 50 | 0.084 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.084 | |
| multi organism cellular process | GO:0044764 | 120 | 0.081 | |
| ribonucleotide metabolic process | GO:0009259 | 377 | 0.078 | |
| nucleobase containing small molecule metabolic process | GO:0055086 | 491 | 0.077 | |
| rna catabolic process | GO:0006401 | 118 | 0.074 | |
| purine ribonucleoside triphosphate metabolic process | GO:0009205 | 354 | 0.072 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.071 | |
| endomembrane system organization | GO:0010256 | 74 | 0.068 | |
| ribonucleoside triphosphate catabolic process | GO:0009203 | 327 | 0.067 | |
| ribosome biogenesis | GO:0042254 | 335 | 0.066 | |
| purine nucleoside triphosphate metabolic process | GO:0009144 | 356 | 0.065 | |
| regulation of molecular function | GO:0065009 | 320 | 0.063 | |
| response to chemical | GO:0042221 | 390 | 0.062 | |
| telomere localization | GO:0034397 | 11 | 0.062 | |
| organelle localization | GO:0051640 | 128 | 0.062 | |
| glycosyl compound catabolic process | GO:1901658 | 335 | 0.062 | |
| response to endogenous stimulus | GO:0009719 | 26 | 0.060 | |
| multi organism process | GO:0051704 | 233 | 0.060 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.060 | |
| nucleoside phosphate catabolic process | GO:1901292 | 331 | 0.059 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.057 | |
| rna surveillance | GO:0071025 | 30 | 0.053 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.053 | |
| carbohydrate derivative metabolic process | GO:1901135 | 549 | 0.052 | |
| response to organic substance | GO:0010033 | 182 | 0.052 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.051 | |
| protein transport | GO:0015031 | 345 | 0.050 | |
| mrna catabolic process | GO:0006402 | 93 | 0.049 | |
| nucleoside phosphate metabolic process | GO:0006753 | 458 | 0.048 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.047 | |
| single organism catabolic process | GO:0044712 | 619 | 0.047 | |
| regulation of cell division | GO:0051302 | 113 | 0.047 | |
| dna repair | GO:0006281 | 236 | 0.047 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.046 | |
| nucleoside metabolic process | GO:0009116 | 394 | 0.045 | |
| microtubule nucleation | GO:0007020 | 17 | 0.045 | |
| sexual reproduction | GO:0019953 | 216 | 0.043 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.043 | |
| reproductive process | GO:0022414 | 248 | 0.043 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.042 | |
| growth | GO:0040007 | 157 | 0.042 | |
| nucleotide metabolic process | GO:0009117 | 453 | 0.042 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.042 | |
| regulation of establishment of protein localization | GO:0070201 | 17 | 0.040 | |
| purine nucleotide metabolic process | GO:0006163 | 376 | 0.039 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.039 | |
| negative regulation of protein modification process | GO:0031400 | 37 | 0.038 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.037 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.037 | |
| microtubule organizing center organization | GO:0031023 | 33 | 0.037 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.037 | |
| nuclear retention of pre mrna at the site of transcription | GO:0071033 | 9 | 0.037 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.036 | |
| developmental process | GO:0032502 | 261 | 0.034 | |
| transcription dependent tethering of rna polymerase ii gene dna at nuclear periphery | GO:0000972 | 19 | 0.033 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.033 | |
| organonitrogen compound catabolic process | GO:1901565 | 404 | 0.033 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.031 | |
| cellular response to endogenous stimulus | GO:0071495 | 22 | 0.031 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.030 | |
| chromatin modification | GO:0016568 | 200 | 0.030 | |
| rrna containing ribonucleoprotein complex export from nucleus | GO:0071428 | 46 | 0.030 | |
| organophosphate metabolic process | GO:0019637 | 597 | 0.030 | |
| chromatin silencing at telomere | GO:0006348 | 84 | 0.030 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.030 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.029 | |
| protein catabolic process | GO:0030163 | 221 | 0.029 | |
| purine ribonucleoside catabolic process | GO:0046130 | 330 | 0.029 | |
| establishment of ribosome localization | GO:0033753 | 46 | 0.028 | |
| nucleotide catabolic process | GO:0009166 | 330 | 0.027 | |
| homeostatic process | GO:0042592 | 227 | 0.027 | |
| ribosomal subunit export from nucleus | GO:0000054 | 46 | 0.027 | |
| cellular component morphogenesis | GO:0032989 | 97 | 0.026 | |
| nuclear pore localization | GO:0051664 | 9 | 0.025 | |
| double strand break repair | GO:0006302 | 105 | 0.025 | |
| purine nucleoside metabolic process | GO:0042278 | 380 | 0.025 | |
| regulation of intracellular protein transport | GO:0033157 | 13 | 0.024 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.024 | |
| cell wall organization or biogenesis | GO:0071554 | 190 | 0.024 | |
| purine containing compound catabolic process | GO:0072523 | 332 | 0.023 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.023 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.023 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.023 | |
| chromatin organization | GO:0006325 | 242 | 0.023 | |
| nucleoside monophosphate metabolic process | GO:0009123 | 267 | 0.023 | |
| regulation of protein targeting | GO:1903533 | 10 | 0.023 | |
| ribonucleoprotein complex export from nucleus | GO:0071426 | 46 | 0.023 | |
| regulation of nuclear division | GO:0051783 | 103 | 0.023 | |
| nucleoside triphosphate metabolic process | GO:0009141 | 364 | 0.023 | |
| cell cycle g1 s phase transition | GO:0044843 | 64 | 0.022 | |
| ribonucleoside catabolic process | GO:0042454 | 332 | 0.022 | |
| cellular protein catabolic process | GO:0044257 | 213 | 0.022 | |
| ribosome localization | GO:0033750 | 46 | 0.022 | |
| ribonucleoprotein complex localization | GO:0071166 | 46 | 0.022 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.022 | |
| meiotic nuclear division | GO:0007126 | 163 | 0.021 | |
| regulation of cell cycle phase transition | GO:1901987 | 70 | 0.021 | |
| maturation of ssu rrna | GO:0030490 | 105 | 0.021 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.020 | |
| nuclear envelope organization | GO:0006998 | 11 | 0.020 | |
| dna replication | GO:0006260 | 147 | 0.020 | |
| proteasome mediated ubiquitin dependent protein catabolic process | GO:0043161 | 137 | 0.020 | |
| protein localization to nucleus | GO:0034504 | 74 | 0.019 | |
| establishment of protein localization to membrane | GO:0090150 | 99 | 0.019 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.019 | |
| er associated ubiquitin dependent protein catabolic process | GO:0030433 | 46 | 0.019 | |
| amine metabolic process | GO:0009308 | 51 | 0.019 | |
| negative regulation of meiotic cell cycle | GO:0051447 | 24 | 0.019 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.019 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.019 | |
| cell division | GO:0051301 | 205 | 0.019 | |
| protein ubiquitination | GO:0016567 | 118 | 0.019 | |
| negative regulation of nuclear division | GO:0051784 | 62 | 0.018 | |
| regulation of protein ubiquitination | GO:0031396 | 20 | 0.018 | |
| purine ribonucleoside triphosphate catabolic process | GO:0009207 | 327 | 0.018 | |
| telomere tethering at nuclear periphery | GO:0034398 | 8 | 0.018 | |
| regulation of protein transport | GO:0051223 | 17 | 0.018 | |
| nucleic acid phosphodiester bond hydrolysis | GO:0090305 | 194 | 0.018 | |
| protein localization to endoplasmic reticulum | GO:0070972 | 47 | 0.018 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.018 | |
| regulation of response to stress | GO:0080134 | 57 | 0.018 | |
| carbohydrate derivative catabolic process | GO:1901136 | 339 | 0.017 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.017 | |
| single organism reproductive process | GO:0044702 | 159 | 0.017 | |
| atp catabolic process | GO:0006200 | 224 | 0.017 | |
| rna 5 end processing | GO:0000966 | 33 | 0.017 | |
| cellular component disassembly | GO:0022411 | 86 | 0.017 | |
| regulation of cell cycle process | GO:0010564 | 150 | 0.017 | |
| proteasomal protein catabolic process | GO:0010498 | 141 | 0.016 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.016 | |
| ribosomal large subunit export from nucleus | GO:0000055 | 27 | 0.016 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.016 | |
| nls bearing protein import into nucleus | GO:0006607 | 12 | 0.016 | |
| maintenance of protein location in cell | GO:0032507 | 50 | 0.016 | |
| organic hydroxy compound transport | GO:0015850 | 41 | 0.016 | |
| translation | GO:0006412 | 230 | 0.016 | |
| filamentous growth | GO:0030447 | 124 | 0.016 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.016 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.016 | |
| regulation of intracellular transport | GO:0032386 | 26 | 0.016 | |
| negative regulation of transferase activity | GO:0051348 | 31 | 0.015 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.015 | |
| nucleoside catabolic process | GO:0009164 | 335 | 0.015 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.015 | |
| ribosomal small subunit biogenesis | GO:0042274 | 124 | 0.015 | |
| phosphorylation | GO:0016310 | 291 | 0.015 | |
| methylation | GO:0032259 | 101 | 0.015 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.015 | |
| proteolysis involved in cellular protein catabolic process | GO:0051603 | 198 | 0.015 | |
| nucleoside monophosphate catabolic process | GO:0009125 | 224 | 0.015 | |
| negative regulation of cell division | GO:0051782 | 66 | 0.015 | |
| cellular amine metabolic process | GO:0044106 | 51 | 0.015 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.014 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 19 | 0.014 | |
| negative regulation of cellular component organization | GO:0051129 | 109 | 0.014 | |
| purine ribonucleoside monophosphate metabolic process | GO:0009167 | 262 | 0.014 | |
| protein export from nucleus | GO:0006611 | 17 | 0.014 | |
| positive regulation of catabolic process | GO:0009896 | 135 | 0.014 | |
| regulation of dna replication | GO:0006275 | 51 | 0.014 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.014 | |
| dna packaging | GO:0006323 | 55 | 0.014 | |
| intracellular mrna localization | GO:0008298 | 23 | 0.014 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.013 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.013 | |
| positive regulation of cell death | GO:0010942 | 3 | 0.013 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.013 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.013 | |
| sporulation resulting in formation of a cellular spore | GO:0030435 | 129 | 0.013 | |
| macromolecule methylation | GO:0043414 | 85 | 0.013 | |
| regulation of chromatin organization | GO:1902275 | 23 | 0.013 | |
| cellular developmental process | GO:0048869 | 191 | 0.013 | |
| response to mitotic cell cycle spindle assembly checkpoint signaling | GO:0072479 | 4 | 0.013 | |
| reproduction of a single celled organism | GO:0032505 | 191 | 0.013 | |
| regulation of nucleotide metabolic process | GO:0006140 | 110 | 0.013 | |
| cellular component assembly involved in morphogenesis | GO:0010927 | 73 | 0.013 | |
| response to hypoxia | GO:0001666 | 4 | 0.013 | |
| regulation of nucleotide catabolic process | GO:0030811 | 106 | 0.013 | |
| modification dependent protein catabolic process | GO:0019941 | 181 | 0.013 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 29 | 0.013 | |
| negative regulation of organelle organization | GO:0010639 | 103 | 0.013 | |
| ribonucleoside monophosphate metabolic process | GO:0009161 | 265 | 0.013 | |
| positive regulation of apoptotic process | GO:0043065 | 3 | 0.013 | |
| regulation of transport | GO:0051049 | 85 | 0.013 | |
| positive regulation of catalytic activity | GO:0043085 | 178 | 0.013 | |
| regulation of dna templated transcription initiation | GO:2000142 | 19 | 0.012 | |
| meiotic cell cycle process | GO:1903046 | 229 | 0.012 | |
| purine ribonucleotide metabolic process | GO:0009150 | 372 | 0.012 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.012 | |
| localization within membrane | GO:0051668 | 29 | 0.012 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.012 | |
| negative regulation of protein kinase activity | GO:0006469 | 23 | 0.012 | |
| posttranscriptional tethering of rna polymerase ii gene dna at nuclear periphery | GO:0000973 | 16 | 0.012 | |
| fungal type cell wall organization or biogenesis | GO:0071852 | 169 | 0.012 | |
| reproductive process in single celled organism | GO:0022413 | 145 | 0.012 | |
| positive regulation of secretion | GO:0051047 | 2 | 0.012 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.012 | |
| maintenance of location in cell | GO:0051651 | 58 | 0.012 | |
| ribonucleoside monophosphate catabolic process | GO:0009158 | 224 | 0.012 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.011 | |
| maintenance of protein location | GO:0045185 | 53 | 0.011 | |
| regulation of metal ion transport | GO:0010959 | 2 | 0.011 | |
| positive regulation of molecular function | GO:0044093 | 185 | 0.011 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.011 | |
| regulation of meiosis | GO:0040020 | 42 | 0.011 | |
| ribosomal small subunit export from nucleus | GO:0000056 | 13 | 0.011 | |
| regulation of rna splicing | GO:0043484 | 3 | 0.011 | |
| negative regulation of proteolysis involved in cellular protein catabolic process | GO:1903051 | 27 | 0.011 | |
| regulation of meiotic cell cycle | GO:0051445 | 43 | 0.011 | |
| cellular response to hypoxia | GO:0071456 | 4 | 0.010 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.010 | |
| cell wall organization | GO:0071555 | 146 | 0.010 | |
| chromatin silencing | GO:0006342 | 147 | 0.010 | |
| exocytosis | GO:0006887 | 42 | 0.010 | |
| response to biotic stimulus | GO:0009607 | 8 | 0.010 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.010 | |
