| transcription elongation from rna polymerase ii promoter | GO:0006368 | 81 | 0.974 | |
| positive regulation of transcription from rna polymerase ii promoter | GO:0045944 | 252 | 0.918 | |
| regulation of transcription from rna polymerase ii promoter | GO:0006357 | 394 | 0.903 | |
| chromatin organization | GO:0006325 | 242 | 0.894 | |
| positive regulation of rna biosynthetic process | GO:1902680 | 286 | 0.861 | |
| transcription from rna polymerase i promoter | GO:0006360 | 63 | 0.814 | |
| positive regulation of transcription elongation from rna polymerase ii promoter | GO:0032968 | 38 | 0.809 | |
| positive regulation of transcription from rna polymerase i promoter | GO:0045943 | 19 | 0.701 | |
| regulation of transcription from rna polymerase i promoter | GO:0006356 | 36 | 0.671 | |
| negative regulation of macromolecule metabolic process | GO:0010605 | 375 | 0.630 | |
| regulation of response to stress | GO:0080134 | 57 | 0.614 | |
| regulation of transcription elongation from rna polymerase ii promoter | GO:0034243 | 40 | 0.601 | |
| histone h2b conserved c terminal lysine ubiquitination | GO:0071894 | 6 | 0.598 | |
| positive regulation of macromolecule metabolic process | GO:0010604 | 394 | 0.596 | |
| negative regulation of nitrogen compound metabolic process | GO:0051172 | 300 | 0.563 | |
| positive regulation of dna templated transcription elongation | GO:0032786 | 42 | 0.548 | |
| positive regulation of gene expression | GO:0010628 | 321 | 0.543 | |
| protein modification by small protein conjugation | GO:0032446 | 144 | 0.520 | |
| regulation of cellular protein metabolic process | GO:0032268 | 232 | 0.506 | |
| methylation | GO:0032259 | 101 | 0.490 | |
| protein alkylation | GO:0008213 | 48 | 0.487 | |
| dna templated transcription initiation | GO:0006352 | 71 | 0.485 | |
| single organism cellular localization | GO:1902580 | 375 | 0.483 | |
| regulation of dna templated transcription elongation | GO:0032784 | 44 | 0.447 | |
| negative regulation of macromolecule biosynthetic process | GO:0010558 | 291 | 0.447 | |
| regulation of chromatin modification | GO:1903308 | 23 | 0.444 | |
| macromolecule methylation | GO:0043414 | 85 | 0.430 | |
| regulation of response to dna damage stimulus | GO:2001020 | 17 | 0.429 | |
| phosphorylation of rna polymerase ii c terminal domain | GO:0070816 | 20 | 0.412 | |
| protein ubiquitination | GO:0016567 | 118 | 0.410 | |
| dna templated transcription elongation | GO:0006354 | 91 | 0.359 | |
| regulation of organelle organization | GO:0033043 | 243 | 0.355 | |
| signal transduction | GO:0007165 | 208 | 0.345 | |
| regulation of cellular component biogenesis | GO:0044087 | 112 | 0.338 | |
| histone h3 k4 methylation | GO:0051568 | 18 | 0.321 | |
| positive regulation of nitrogen compound metabolic process | GO:0051173 | 412 | 0.309 | |
| positive regulation of transcription dna templated | GO:0045893 | 286 | 0.305 | |
| regulation of histone ubiquitination | GO:0033182 | 7 | 0.301 | |
| regulation of cellular response to stress | GO:0080135 | 50 | 0.288 | |
| negative regulation of cellular metabolic process | GO:0031324 | 407 | 0.279 | |
| negative regulation of gene expression | GO:0010629 | 312 | 0.272 | |
| protein modification by small protein conjugation or removal | GO:0070647 | 172 | 0.268 | |
| single organism membrane organization | GO:0044802 | 275 | 0.265 | |
| regulation of protein phosphorylation | GO:0001932 | 75 | 0.262 | |
| ncrna processing | GO:0034470 | 330 | 0.257 | |
| regulation of protein metabolic process | GO:0051246 | 237 | 0.255 | |
| cellular amino acid metabolic process | GO:0006520 | 225 | 0.248 | |
| response to organic substance | GO:0010033 | 182 | 0.238 | |
| intracellular signal transduction | GO:0035556 | 112 | 0.232 | |
| histone ubiquitination | GO:0016574 | 17 | 0.226 | |
| protein complex biogenesis | GO:0070271 | 314 | 0.226 | |
| regulation of protein complex assembly | GO:0043254 | 77 | 0.221 | |
| regulation of cellular component organization | GO:0051128 | 334 | 0.216 | |
| negative regulation of biosynthetic process | GO:0009890 | 312 | 0.212 | |
| regulation of chromatin organization | GO:1902275 | 23 | 0.209 | |
| positive regulation of protein metabolic process | GO:0051247 | 93 | 0.208 | |
| negative regulation of nucleic acid templated transcription | GO:1903507 | 260 | 0.206 | |
| mitotic cell cycle | GO:0000278 | 306 | 0.198 | |
| protein phosphorylation | GO:0006468 | 197 | 0.197 | |
| transcription elongation from rna polymerase i promoter | GO:0006362 | 10 | 0.197 | |
| regulation of response to stimulus | GO:0048583 | 157 | 0.195 | |
| transcription coupled nucleotide excision repair | GO:0006283 | 16 | 0.194 | |
| nucleotide excision repair | GO:0006289 | 50 | 0.194 | |
| negative regulation of cellular biosynthetic process | GO:0031327 | 312 | 0.192 | |
| single organism signaling | GO:0044700 | 208 | 0.188 | |
| positive regulation of rna metabolic process | GO:0051254 | 294 | 0.183 | |
| positive regulation of nucleic acid templated transcription | GO:1903508 | 286 | 0.174 | |
| regulation of protein ubiquitination | GO:0031396 | 20 | 0.172 | |
| protein complex assembly | GO:0006461 | 302 | 0.171 | |
| regulation of histone modification | GO:0031056 | 18 | 0.171 | |
| regulation of phosphorylation | GO:0042325 | 86 | 0.170 | |
| protein methylation | GO:0006479 | 48 | 0.165 | |
| positive regulation of nucleobase containing compound metabolic process | GO:0045935 | 409 | 0.162 | |
| regulation of phosphorus metabolic process | GO:0051174 | 230 | 0.160 | |
| negative regulation of transcription from rna polymerase ii promoter | GO:0000122 | 137 | 0.160 | |
| vacuole organization | GO:0007033 | 75 | 0.158 | |
| regulation of histone h2b ubiquitination | GO:2001166 | 6 | 0.156 | |
| dna templated transcription termination | GO:0006353 | 42 | 0.154 | |
| multi organism process | GO:0051704 | 233 | 0.149 | |
| negative regulation of transcription dna templated | GO:0045892 | 258 | 0.148 | |
| mrna processing | GO:0006397 | 185 | 0.147 | |
| vesicle mediated transport | GO:0016192 | 335 | 0.142 | |
| regulation of gene expression epigenetic | GO:0040029 | 147 | 0.137 | |
| positive regulation of cellular protein metabolic process | GO:0032270 | 89 | 0.134 | |
| cellular component disassembly | GO:0022411 | 86 | 0.124 | |
| histone lysine methylation | GO:0034968 | 26 | 0.120 | |
| histone modification | GO:0016570 | 119 | 0.120 | |
| membrane organization | GO:0061024 | 276 | 0.118 | |
| single organism catabolic process | GO:0044712 | 619 | 0.117 | |
| positive regulation of protein modification process | GO:0031401 | 49 | 0.109 | |
| positive regulation of transcription elongation from rna polymerase i promoter | GO:2001209 | 7 | 0.105 | |
| cell surface receptor signaling pathway | GO:0007166 | 38 | 0.104 | |
| regulation of dna repair | GO:0006282 | 14 | 0.097 | |
| regulation of chromosome organization | GO:0033044 | 66 | 0.094 | |
| organic acid metabolic process | GO:0006082 | 352 | 0.093 | |
| peptidyl lysine methylation | GO:0018022 | 24 | 0.091 | |
| rna polymerase ii transcriptional preinitiation complex assembly | GO:0051123 | 40 | 0.088 | |
| positive regulation of cellular biosynthetic process | GO:0031328 | 336 | 0.086 | |
| oxoacid metabolic process | GO:0043436 | 351 | 0.085 | |
| negative regulation of rna biosynthetic process | GO:1902679 | 260 | 0.084 | |
| positive regulation of biosynthetic process | GO:0009891 | 336 | 0.082 | |
| protein dna complex subunit organization | GO:0071824 | 153 | 0.081 | |
| regulation of transcription coupled nucleotide excision repair | GO:0090262 | 7 | 0.078 | |
| signaling | GO:0023052 | 208 | 0.078 | |
| cell communication | GO:0007154 | 345 | 0.077 | |
| regulation of transcription elongation from rna polymerase i promoter | GO:2001207 | 7 | 0.075 | |
| cellular response to dna damage stimulus | GO:0006974 | 287 | 0.072 | |
| peptidyl amino acid modification | GO:0018193 | 116 | 0.068 | |
| ribonucleoprotein complex subunit organization | GO:0071826 | 152 | 0.068 | |
| phosphorylation | GO:0016310 | 291 | 0.067 | |
| anatomical structure formation involved in morphogenesis | GO:0048646 | 136 | 0.065 | |
| regulation of phosphate metabolic process | GO:0019220 | 230 | 0.064 | |
| mitotic cell cycle process | GO:1903047 | 294 | 0.064 | |
| aromatic compound catabolic process | GO:0019439 | 491 | 0.063 | |
| regulation of cell communication | GO:0010646 | 124 | 0.063 | |
| single organism developmental process | GO:0044767 | 258 | 0.062 | |
| dna replication | GO:0006260 | 147 | 0.062 | |
| dna repair | GO:0006281 | 236 | 0.061 | |
| transcription initiation from rna polymerase ii promoter | GO:0006367 | 55 | 0.061 | |
| regulation of histone methylation | GO:0031060 | 8 | 0.059 | |
| phosphorylation of rna polymerase ii c terminal domain serine 2 residues | GO:0071619 | 4 | 0.059 | |
| positive regulation of phosphorus metabolic process | GO:0010562 | 147 | 0.059 | |
| protein monoubiquitination | GO:0006513 | 13 | 0.058 | |
| ncrna 3 end processing | GO:0043628 | 44 | 0.057 | |
| regulation of protein modification process | GO:0031399 | 110 | 0.057 | |
| positive regulation of phosphate metabolic process | GO:0045937 | 147 | 0.055 | |
| macromolecule catabolic process | GO:0009057 | 383 | 0.054 | |
| posttranscriptional regulation of gene expression | GO:0010608 | 115 | 0.051 | |
| regulation of mitotic cell cycle | GO:0007346 | 107 | 0.051 | |
| regulation of cell cycle | GO:0051726 | 195 | 0.050 | |
| regulation of histone h3 k4 methylation | GO:0051569 | 5 | 0.050 | |
| regulation of cellular ketone metabolic process | GO:0010565 | 42 | 0.049 | |
| regulation of histone h2b conserved c terminal lysine ubiquitination | GO:2001173 | 5 | 0.048 | |
| peptidyl lysine modification | GO:0018205 | 77 | 0.048 | |
| ribonucleoprotein complex assembly | GO:0022618 | 143 | 0.047 | |
| cellular ketone metabolic process | GO:0042180 | 63 | 0.047 | |
| regulation of nucleotide excision repair | GO:2000819 | 7 | 0.046 | |
| regulation of biological quality | GO:0065008 | 391 | 0.046 | |
| response to external stimulus | GO:0009605 | 158 | 0.046 | |
| carboxylic acid metabolic process | GO:0019752 | 338 | 0.045 | |
| histone methylation | GO:0016571 | 28 | 0.045 | |
| response to chemical | GO:0042221 | 390 | 0.045 | |
| negative regulation of nucleobase containing compound metabolic process | GO:0045934 | 295 | 0.045 | |
| macromolecular complex disassembly | GO:0032984 | 80 | 0.044 | |
| organelle localization | GO:0051640 | 128 | 0.043 | |
| cellular response to chemical stimulus | GO:0070887 | 315 | 0.042 | |
| positive regulation of macromolecule biosynthetic process | GO:0010557 | 325 | 0.041 | |
| negative regulation of rna metabolic process | GO:0051253 | 262 | 0.041 | |
| regulation of protein modification by small protein conjugation or removal | GO:1903320 | 29 | 0.040 | |
| regulation of catalytic activity | GO:0050790 | 307 | 0.039 | |
| regulation of dna metabolic process | GO:0051052 | 100 | 0.038 | |
| establishment of protein localization | GO:0045184 | 367 | 0.037 | |
| positive regulation of organelle organization | GO:0010638 | 85 | 0.037 | |
| regulation of signal transduction | GO:0009966 | 114 | 0.037 | |
| chromatin modification | GO:0016568 | 200 | 0.036 | |
| positive regulation of cellular component organization | GO:0051130 | 116 | 0.033 | |
| localization within membrane | GO:0051668 | 29 | 0.033 | |
| g1 s transition of mitotic cell cycle | GO:0000082 | 64 | 0.033 | |
| negative regulation of cellular macromolecule biosynthetic process | GO:2000113 | 289 | 0.031 | |
| autophagy | GO:0006914 | 106 | 0.030 | |
| response to osmotic stress | GO:0006970 | 83 | 0.030 | |
| regulation of localization | GO:0032879 | 127 | 0.029 | |
| positive regulation of protein phosphorylation | GO:0001934 | 28 | 0.028 | |
| dna templated transcriptional preinitiation complex assembly | GO:0070897 | 51 | 0.028 | |
| gene silencing | GO:0016458 | 151 | 0.028 | |
| protein localization to organelle | GO:0033365 | 337 | 0.026 | |
| protein targeting | GO:0006605 | 272 | 0.026 | |
| regulation of cellular amino acid metabolic process | GO:0006521 | 16 | 0.026 | |
| positive regulation of cell communication | GO:0010647 | 28 | 0.025 | |
| protein transport | GO:0015031 | 345 | 0.025 | |
| cellular nitrogen compound catabolic process | GO:0044270 | 494 | 0.024 | |
| regulation of signaling | GO:0023051 | 119 | 0.023 | |
| positive regulation of phosphorylation | GO:0042327 | 33 | 0.021 | |
| cell cycle phase transition | GO:0044770 | 144 | 0.020 | |
| homeostatic process | GO:0042592 | 227 | 0.020 | |
| response to organic cyclic compound | GO:0014070 | 1 | 0.020 | |
| regulation of transcription from rna polymerase ii promoter in response to stress | GO:0043618 | 51 | 0.019 | |
| conjugation with cellular fusion | GO:0000747 | 106 | 0.019 | |
| response to extracellular stimulus | GO:0009991 | 156 | 0.018 | |
| cellular modified amino acid metabolic process | GO:0006575 | 51 | 0.018 | |
| mrna metabolic process | GO:0016071 | 269 | 0.018 | |
| heterocycle catabolic process | GO:0046700 | 494 | 0.018 | |
| ion transport | GO:0006811 | 274 | 0.018 | |
| reproductive process | GO:0022414 | 248 | 0.018 | |
| endomembrane system organization | GO:0010256 | 74 | 0.017 | |
| amine metabolic process | GO:0009308 | 51 | 0.017 | |
| cellular response to oxygen containing compound | GO:1901701 | 43 | 0.017 | |
| positive regulation of phosphorylation of rna polymerase ii c terminal domain | GO:1901409 | 4 | 0.017 | |
| ribonucleotide catabolic process | GO:0009261 | 327 | 0.017 | |
| protein targeting to vacuole | GO:0006623 | 91 | 0.017 | |
| developmental process | GO:0032502 | 261 | 0.017 | |
| regulation of transcription initiation from rna polymerase ii promoter | GO:0060260 | 19 | 0.016 | |
| single organism membrane budding | GO:1902591 | 21 | 0.015 | |
| regulation of dna templated transcription in response to stress | GO:0043620 | 51 | 0.015 | |
| lipid metabolic process | GO:0006629 | 269 | 0.015 | |
| positive regulation of cellular amino acid metabolic process | GO:0045764 | 7 | 0.015 | |
| single organism membrane fusion | GO:0044801 | 71 | 0.015 | |
| regulation of cellular catabolic process | GO:0031329 | 195 | 0.014 | |
| gene silencing by rna | GO:0031047 | 3 | 0.014 | |
| histone h3 k4 trimethylation | GO:0080182 | 3 | 0.014 | |
| organic cyclic compound catabolic process | GO:1901361 | 499 | 0.014 | |
| cellular response to organic substance | GO:0071310 | 159 | 0.014 | |
| establishment of organelle localization | GO:0051656 | 96 | 0.014 | |
| positive regulation of secretion by cell | GO:1903532 | 2 | 0.014 | |
| regulation of cellular amine metabolic process | GO:0033238 | 21 | 0.013 | |
| cell cycle g1 s phase transition | GO:0044843 | 64 | 0.013 | |
| chromatin silencing | GO:0006342 | 147 | 0.013 | |
| regulation of vesicle mediated transport | GO:0060627 | 39 | 0.013 | |
| purine nucleoside triphosphate catabolic process | GO:0009146 | 329 | 0.013 | |
| double strand break repair via nonhomologous end joining | GO:0006303 | 27 | 0.013 | |
| ribonucleoside triphosphate metabolic process | GO:0009199 | 356 | 0.013 | |
| response to abiotic stimulus | GO:0009628 | 159 | 0.013 | |
| late endosome to vacuole transport | GO:0045324 | 42 | 0.013 | |
| response to topologically incorrect protein | GO:0035966 | 38 | 0.013 | |
| negative regulation of cellular protein metabolic process | GO:0032269 | 85 | 0.012 | |
| cellular developmental process | GO:0048869 | 191 | 0.012 | |
| positive regulation of chromatin modification | GO:1903310 | 13 | 0.012 | |
| purine containing compound metabolic process | GO:0072521 | 400 | 0.012 | |
| regulation of catabolic process | GO:0009894 | 199 | 0.012 | |
| nucleoside triphosphate catabolic process | GO:0009143 | 329 | 0.012 | |
| cellular response to heat | GO:0034605 | 53 | 0.012 | |
| modification dependent macromolecule catabolic process | GO:0043632 | 203 | 0.012 | |
| purine nucleoside catabolic process | GO:0006152 | 330 | 0.011 | |
| purine ribonucleotide catabolic process | GO:0009154 | 327 | 0.011 | |
| ribonucleoside metabolic process | GO:0009119 | 389 | 0.011 | |
| positive regulation of histone modification | GO:0031058 | 12 | 0.011 | |
| regulation of translation | GO:0006417 | 89 | 0.011 | |
| negative regulation of protein metabolic process | GO:0051248 | 85 | 0.011 | |
| mitotic cell cycle phase transition | GO:0044772 | 141 | 0.011 | |
| regulation of multi organism process | GO:0043900 | 20 | 0.011 | |
| purine nucleotide catabolic process | GO:0006195 | 328 | 0.011 | |
| sporulation | GO:0043934 | 132 | 0.011 | |
| protein complex disassembly | GO:0043241 | 70 | 0.010 | |
| sexual sporulation | GO:0034293 | 113 | 0.010 | |
| regulation of molecular function | GO:0065009 | 320 | 0.010 | |
| covalent chromatin modification | GO:0016569 | 119 | 0.010 | |
